Citation:

journal.pone.0190625

Name: Seawater carbonate chemistry and Oikopleura dioica growth dynamics in mesocosm experiment
Published: 2018-06-14
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Animalia; Benthos; Biomass/Abundance/Elemental composition; Chordata; Coast and continental shelf; Growth/Morphology; Laboratory experiment; Mesocosm or benthocosm; North Atlantic; Oikopleura dioica; Single species; Temperate; Temperature; Zooplankton

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Keyword(s):

Animalia; Benthos; Biomass/Abundance/Elemental composition; Chordata; Coast and continental shelf; Growth/Morphology; Laboratory experiment; Mesocosm or benthocosm; North Atlantic; Oikopleura dioica; Single species; Temperate; Temperature; Zooplankton

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-23.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		Thompson, Eric M		study
2	Species	Species		Thompson, Eric M
3	Registration number of species	Reg spec no		Thompson, Eric M
4	Uniform resource locator/link to reference	URL ref		Thompson, Eric M		WoRMS Aphia ID
5	Experiment duration	Exp duration	days	Thompson, Eric M
6	Identification	ID		Thompson, Eric M		Mesocosm
7	Replicate	Repl		Thompson, Eric M
8	Day of experiment	DOE	day	Thompson, Eric M
9	Individuals	Ind	#	Thompson, Eric M		per L
10	Treatment	Treat		Thompson, Eric M		TL=Temperature low, ambient fjord temperature;TH= targeted temperature +3C relative to TL; PA= Ambient pH ; PL= low pH
11	Body length	BL	mm	Thompson, Eric M
12	Width	w	µm	Thompson, Eric M		Body
13	Length	l	µm	Thompson, Eric M		Gonad
14	Width	w	µm	Thompson, Eric M		Gonad
15	Length	l	µm	Thompson, Eric M		trunk
16	Temperature, water	Temp	°C	Thompson, Eric M		top
17	Silt, mass brutto	Silt brutto	g	Thompson, Eric M		top
18	pH	pH		Thompson, Eric M		NBS scale, top
19	pH	pH		Thompson, Eric M		total scale, top
20	Alkalinity, total	AT	µmol/kg	Thompson, Eric M		top
21	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Thompson, Eric M	Calculated using CO2calc	top
22	Bicarbonate ion	[HCO3]-	µmol/kg	Thompson, Eric M	Calculated using CO2calc	top
23	Carbonate ion	[CO3]2-	µmol/kg	Thompson, Eric M	Calculated using CO2calc	top
24	Calcite saturation state	Omega Cal		Thompson, Eric M	Calculated using CO2calc	top
25	Aragonite saturation state	Omega Arg		Thompson, Eric M	Calculated using CO2calc	top
26	Temperature, water	Temp	°C	Thompson, Eric M		bottom
27	Silt, mass brutto	Silt brutto	g	Thompson, Eric M		bottom
28	pH	pH		Thompson, Eric M		NBS scale, bottom
29	pH	pH		Thompson, Eric M		total scale, bottom
30	Alkalinity, total	AT	µmol/kg	Thompson, Eric M		bottom
31	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Thompson, Eric M	Calculated using CO2calc	bottom
32	Bicarbonate ion	[HCO3]-	µmol/kg	Thompson, Eric M	Calculated using CO2calc	bottom
33	Carbonate ion	[CO3]2-	µmol/kg	Thompson, Eric M	Calculated using CO2calc	bottom
34	Calcite saturation state	Omega Cal		Thompson, Eric M	Calculated using CO2calc	bottom
35	Aragonite saturation state	Omega Arg		Thompson, Eric M	Calculated using CO2calc	bottom
36	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	bottom
37	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	top
38	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	top
39	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	top
40	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	top
41	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	top
42	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	top
43	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	top
44	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	top
45	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	bottom
46	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	bottom
47	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	bottom
48	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	bottom
49	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	bottom
50	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	bottom
51	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	bottom
52	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	bottom

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

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50770 data points

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