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Wang, Xiaojie; Song, Lulu; Chen, Yi; Ran, Haoyu; Song, Jiakun (2017): Seawater carbonate chemistry and early development and escape behavior of marine medaka (Oryzias melastigma) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.890639, Supplement to: Wang, X et al. (2017): Impact of ocean acidification on the early development and escape behavior of marine medaka ( Oryzias melastigma ). Marine Environmental Research, 131, 10-18, https://doi.org/10.1016/j.marenvres.2017.09.001

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Abstract:
Ocean acidification is predicted to affect a wide diversity of marine organisms. However, no studies have reported the effects of ocean acidification on Indian Ocean fish. We have used the Indian Ocean medaka (Oryzias melastigma) as a model species for a marine fish that lives in coastal waters. We investigated the impact of ocean acidification on the embryonic development and the stereotyped escape behavior (mediated by the Mauthner cell) in newly hatched larvae. Newly fertilized eggs of medaka were reared in seawater at three different partial pressures of carbon dioxide (pCO2): control at 450 μatm, moderate at 1160 μatm, and high at 1783 μatm. Hatching rates, embryonic duration, and larval malformation rates were compared and were not significantly different between the treatments and the control. In the high pCO2 group, however, the yolks of larvae were significantly smaller than in the control group, and the newly hatched larvae were significantly longer than the larvae in the control. In the moderate pCO2 group, the eye distance decreased significantly. No significantly negative growth effects were observed in the larvae when exposed to pCO2 levels that are predicted as a result of ocean acidification in the next 100–200 years. Larvae reared under control conditions readily produced C-start escape behavior to mechanosensory stimuli; however, in the moderate and high pCO2 experimental groups, the probabilities of C-start were significantly lower than those of the control group. Therefore, the sensory integration needed for the C-start escape behavior appears to be vulnerable to ocean acidification. Altered behavior in marine larval fish, particularly behaviors involved in escape from predation, could have potentially negative implications to fish populations, and, further, to the marine ecosystems at the levels of CO2 projected for the future.
Keyword(s):
Animalia; Behaviour; Bottles or small containers/Aquaria (<20 L); Chordata; Development; Growth/Morphology; Indian Ocean; Laboratory experiment; Laboratory strains; Nekton; Oryzias melastigma; Pelagos; Reproduction; Single species
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-05-23.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeSong, Jiakunstudy
SpeciesSpeciesSong, Jiakun
Registration number of speciesReg spec noSong, Jiakun
Uniform resource locator/link to referenceURL refSong, JiakunWoRMS Aphia ID
TreatmentTreatSong, Jiakun
Hatching rateHatching%Song, Jiakun
Hatching rate, standard errorHatching±Song, Jiakun
Time in daysTimedaysSong, Jiakun
Body massBMµgSong, Jiakun
10 Body mass, standard deviationBM std dev±Song, Jiakun
11 Fish, standard lengthFish SLmmSong, Jiakun
12 Fish, standard length, standard deviationFish SL std dev±Song, Jiakun
13 DistanceDistanceµmSong, JiakunPectoral fin
14 Distance, standard deviationDistance std dev±Song, JiakunPectoral fin
15 DiameterصmSong, JiakunEye
16 Diameter, standard deviationØ std dev±Song, JiakunEye
17 DistanceDistanceµmSong, JiakunEye
18 Distance, standard deviationDistance std dev±Song, JiakunEye
19 HeighthµmSong, Jiakunyolk sac
20 Height, standard deviationh std dev±Song, Jiakunyolk sac
21 DiameterصmSong, Jiakunyolk sac
22 Diameter, standard deviationØ std dev±Song, Jiakunyolk sac
23 ProbabilityProb%Song, JiakunC-start
24 Time in secondsTimesSong, JiakunLatency of movement onset
25 Time, standard deviationTime std devSong, JiakunLatency of movement onset
26 AngleAngledegSong, JiakunMaximum bending
27 Angle, standard deviationAngle std dev±Song, JiakunMaximum bending
28 Time in secondsTimesSong, JiakunDuration of stage 1
29 Time, standard deviationTime std devSong, JiakunDuration of stage 1
30 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmSong, JiakunCalculated using CO2SYS
31 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Song, JiakunCalculated using CO2SYS
32 pHpHSong, JiakunPotentiometricNBS scale
33 pH, standard deviationpH std dev±Song, JiakunPotentiometricNBS scale
34 SalinitySalSong, Jiakun
35 Salinity, standard deviationSal std dev±Song, Jiakun
36 Carbon, inorganic, dissolvedDICmg/lSong, JiakunCalculated using CO2SYS
37 Carbon, inorganic, dissolved, standard deviationDIC std dev±Song, JiakunCalculated using CO2SYS
38 Alkalinity, totalATµmol/kgSong, JiakunPotentiometric titration
39 Alkalinity, total, standard deviationAT std dev±Song, JiakunPotentiometric titration
40 Temperature, waterTemp°CSong, Jiakun
41 Temperature, water, standard deviationTemp std dev±Song, Jiakun
42 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
44 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1377 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Treat

Hatching [%]

Hatching [±]

Time [days]

BM [µg]
10 
BM std dev [±]
11 
Fish SL [mm]
12 
Fish SL std dev [±]
13 
Distance [µm]
(Pectoral fin)
14 
Distance std dev [±]
(Pectoral fin)
15 
Ø [µm]
(Eye)
16 
Ø std dev [±]
(Eye)
17 
Distance [µm]
(Eye)
18 
Distance std dev [±]
(Eye)
19 
h [µm]
(yolk sac)
20 
h std dev [±]
(yolk sac)
21 
Ø [µm]
(yolk sac)
22 
Ø std dev [±]
(yolk sac)
23 
Prob [%]
(C-start)
24 
Time [s]
(Latency of movement onset)
25 
Time std dev
(Latency of movement onset)
26 
Angle [deg]
(Maximum bending)
27 
Angle std dev [±]
(Maximum bending)
28 
Time [s]
(Duration of stage 1)
29 
Time std dev
(Duration of stage 1)
30 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
31 
pCO2 std dev [±]
(Calculated using CO2SYS)
32 
pH
(NBS scale, Potentiometric)
33 
pH std dev [±]
(NBS scale, Potentiometric)
34 
Sal
35 
Sal std dev [±]
36 
DIC [mg/l]
(Calculated using CO2SYS)
37 
DIC std dev [±]
(Calculated using CO2SYS)
38 
AT [µmol/kg]
(Potentiometric titration)
39 
AT std dev [±]
(Potentiometric titration)
40 
Temp [°C]
41 
Temp std dev [±]
42 
CSC flag
(Calculated using seacarb afte...)
43 
pH
(total scale, Calculated using...)
44 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
45 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
46 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
47 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
48 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
49 
DIC [µmol/kg]
(Calculated using seacarb afte...)
50 
Omega Arg
(Calculated using seacarb afte...)
51 
Omega Cal
(Calculated using seacarb afte...)
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontrol-141.105.0037.23.33.6780.2005054339210204234447655149670.00550.00048160.00680.001246098.130.0131143.20.8220129281267.9812.57466.89468.331751.72184.531948.813.054.62
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontro-239.804.5038.22.13.5880.1994925238933180254448255756650.00580.00038470.00660.0011445108.150.0231144.11.2212120281268.0011.44424.92426.231669.41184.151864.993.044.61
laboratoryOryzias melastigma (fish)315132marinespecies.org1200ppm32.154.4638.95.03.6120.1794974639218208124456755967460.00640.00058640.00720.00101160237.850.0331146.11.3201431281267.7024.22899.77902.551771.9597.971894.141.622.45
laboratoryOryzias melastigma (fish)315132marinespecies.org1800ppm34.254.7639.83.83.7030.1654894939623193324027851778570.00560.00078580.00620.00041783327.670.0331144.82.2199218281267.5237.791403.911408.251826.9266.751931.461.101.67
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontrol-1846098.130.0131143.20.8220129281267.9812.57466.89468.331751.72184.531948.813.054.62
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontrol-1946098.130.0131143.20.8220129281267.9812.57466.89468.331751.72184.531948.813.054.62
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontrol-119.202.001046098.130.0131143.20.8220129281267.9812.57466.89468.331751.72184.531948.813.054.62
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontrol-134.0014.701146098.130.0131143.20.8220129281267.9812.57466.89468.331751.72184.531948.813.054.62
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontrol-118.605.501246098.130.0131143.20.8220129281267.9812.57466.89468.331751.72184.531948.813.054.62
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontrol-132.507.201346098.130.0131143.20.8220129281267.9812.57466.89468.331751.72184.531948.813.054.62
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontrol-124.906.901446098.130.0131143.20.8220129281267.9812.57466.89468.331751.72184.531948.813.054.62
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontrol-124.404.101546098.130.0131143.20.8220129281267.9812.57466.89468.331751.72184.531948.813.054.62
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontrol-19.200.901646098.130.0131143.20.8220129281267.9812.57466.89468.331751.72184.531948.813.054.62
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontrol-17.301.501746098.130.0131143.20.8220129281267.9812.57466.89468.331751.72184.531948.813.054.62
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontro-28445108.150.0231144.11.2212120281268.0011.44424.92426.231669.41184.151864.993.044.61
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontro-215.701.009445108.150.0231144.11.2212120281268.0011.44424.92426.231669.41184.151864.993.044.61
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontro-235.009.0010445108.150.0231144.11.2212120281268.0011.44424.92426.231669.41184.151864.993.044.61
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontro-222.005.0011445108.150.0231144.11.2212120281268.0011.44424.92426.231669.41184.151864.993.044.61
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontro-211.003.0012445108.150.0231144.11.2212120281268.0011.44424.92426.231669.41184.151864.993.044.61
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontro-28.001.0013445108.150.0231144.11.2212120281268.0011.44424.92426.231669.41184.151864.993.044.61
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontro-27.001.0014445108.150.0231144.11.2212120281268.0011.44424.92426.231669.41184.151864.993.044.61
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontro-21.301.0015445108.150.0231144.11.2212120281268.0011.44424.92426.231669.41184.151864.993.044.61
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontro-216445108.150.0231144.11.2212120281268.0011.44424.92426.231669.41184.151864.993.044.61
laboratoryOryzias melastigma (fish)315132marinespecies.orgcontro-217445108.150.0231144.11.2212120281268.0011.44424.92426.231669.41184.151864.993.044.61
laboratoryOryzias melastigma (fish)315132marinespecies.org1200ppm81160237.850.0331146.11.3201431281267.7024.22899.77902.551771.9597.971894.141.622.45
laboratoryOryzias melastigma (fish)315132marinespecies.org1200ppm91160237.850.0331146.11.3201431281267.7024.22899.77902.551771.9597.971894.141.622.45
laboratoryOryzias melastigma (fish)315132marinespecies.org1200ppm1.50101160237.850.0331146.11.3201431281267.7024.22899.77902.551771.9597.971894.141.622.45
laboratoryOryzias melastigma (fish)315132marinespecies.org1200ppm37.4020.60111160237.850.0331146.11.3201431281267.7024.22899.77902.551771.9597.971894.141.622.45
laboratoryOryzias melastigma (fish)315132marinespecies.org1200ppm46.4018.30121160237.850.0331146.11.3201431281267.7024.22899.77902.551771.9597.971894.141.622.45
laboratoryOryzias melastigma (fish)315132marinespecies.org1200ppm14.604.40131160237.850.0331146.11.3201431281267.7024.22899.77902.551771.9597.971894.141.622.45
laboratoryOryzias melastigma (fish)315132marinespecies.org1200ppm10.405.30141160237.850.0331146.11.3201431281267.7024.22899.77902.551771.9597.971894.141.622.45
laboratoryOryzias melastigma (fish)315132marinespecies.org1200ppm33.3016.60151160237.850.0331146.11.3201431281267.7024.22899.77902.551771.9597.971894.141.622.45
laboratoryOryzias melastigma (fish)315132marinespecies.org1200ppm10.70161160237.850.0331146.11.3201431281267.7024.22899.77902.551771.9597.971894.141.622.45
laboratoryOryzias melastigma (fish)315132marinespecies.org1200ppm4.80171160237.850.0331146.11.3201431281267.7024.22899.77902.551771.9597.971894.141.622.45
laboratoryOryzias melastigma (fish)315132marinespecies.org1800ppm12.9081783327.670.0331144.82.2199218281267.5237.791403.911408.251826.9266.751931.461.101.67
laboratoryOryzias melastigma (fish)315132marinespecies.org1800ppm31.305.3291783327.670.0331144.82.2199218281267.5237.791403.911408.251826.9266.751931.461.101.67
laboratoryOryzias melastigma (fish)315132marinespecies.org1800ppm20.605.70101783327.670.0331144.82.2199218281267.5237.791403.911408.251826.9266.751931.461.101.67
laboratoryOryzias melastigma (fish)315132marinespecies.org1800ppm29.5013.70111783327.670.0331144.82.2199218281267.5237.791403.911408.251826.9266.751931.461.101.67
laboratoryOryzias melastigma (fish)315132marinespecies.org1800ppm37.7029.70121783327.670.0331144.82.2199218281267.5237.791403.911408.251826.9266.751931.461.101.67
laboratoryOryzias melastigma (fish)315132marinespecies.org1800ppm4.501.80131783327.670.0331144.82.2199218281267.5237.791403.911408.251826.9266.751931.461.101.67
laboratoryOryzias melastigma (fish)315132marinespecies.org1800ppm4.80141783327.670.0331144.82.2199218281267.5237.791403.911408.251826.9266.751931.461.101.67
laboratoryOryzias melastigma (fish)315132marinespecies.org1800ppm1.70151783327.670.0331144.82.2199218281267.5237.791403.911408.251826.9266.751931.461.101.67
laboratoryOryzias melastigma (fish)315132marinespecies.org1800ppm4.80161783327.670.0331144.82.2199218281267.5237.791403.911408.251826.9266.751931.461.101.67
laboratoryOryzias melastigma (fish)315132marinespecies.org1800ppm171783327.670.0331144.82.2199218281267.5237.791403.911408.251826.9266.751931.461.101.67