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Noisette, Fanny; Hurd, Catriona L (2018): Diffusive boundary layer (DBL) oxygen gradient parameters (table 2) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.885868, In: Noisette, F; Hurd, CL (2018): Seawater carbonate chemistry and abiotic and biotic interactions in the diffusive boundary layer of kelp blades [dataset publication series]. PANGAEA, https://doi.org/10.1594/PANGAEA.885874

Always quote citation above when using data! You can download the citation in several formats below.

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Keyword(s):
South Pacific
Related to:
Noisette, Fanny; Hurd, Catriona L (2018): Abiotic and biotic interactions in the diffusive boundary layer of kelp blades create a potential refuge from ocean acidification. Functional Ecology, 32(5), 1329-1342, https://doi.org/10.1111/1365-2435.13067
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Coverage:
Latitude: -43.058177 * Longitude: 147.330749
Date/Time Start: 2015-10-19T00:00:00 * Date/Time End: 2015-10-29T00:00:00
Event(s):
Tasmania_Hobart * Latitude: -43.058177 * Longitude: 147.330749 * Date/Time Start: 2015-10-19T00:00:00 * Date/Time End: 2015-10-29T00:00:00 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-02-02.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeNoisette, Fannystudy
SpeciesSpeciesNoisette, Fanny
Registration number of speciesReg spec noNoisette, Fanny
Uniform resource locator/link to referenceURL refNoisette, FannyWoRMS Aphia ID
Experiment durationExp durationdaysNoisette, Fanny
TreatmentTreatNoisette, FannyLight condition
TreatmentTreatNoisette, FannypH condition
TreatmentTreatNoisette, FannyFlow
TreatmentTreatNoisette, FannyBlade
10 Sample IDSample IDNoisette, Fanny
11 ParameterParameterNoisette, Fannyy0 from the fitted exponential growth shape curve
12 ParameterParameterNoisette, Fannyalpha from the fitted exponential growth shape curve
13 ParameterParameterNoisette, Fannybeta from the fitted exponential growth shape curve
14 Temperature, waterTemp°CNoisette, Fanny
15 Temperature, water, standard errorT std e±Noisette, Fanny
16 SalinitySalNoisette, Fanny
17 Salinity, standard errorSal std e±Noisette, Fanny
18 pHpHNoisette, FannyPotentiometrictotal scale
19 pH, standard errorpH std e±Noisette, FannyPotentiometrictotal scale
20 Alkalinity, totalATµmol/kgNoisette, FannyPotentiometric titration
21 Alkalinity, total, standard errorAT std e±Noisette, FannyPotentiometric titration
22 Ammonium[NH4]+µmol/lNoisette, Fanny
23 Ammonium, standard error[NH4]+ std e±Noisette, Fanny
24 Nitrate and Nitrite[NO3]- + [NO2]-µmol/lNoisette, Fanny
25 Nitrate and Nitrite, standard error[NO3]- + [NO2]- std e±Noisette, Fanny
26 Phosphate[PO4]3-µmol/lNoisette, Fanny
27 Phosphate, standard errorPO4 std e±Noisette, Fanny
28 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Size:
2052 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Exp duration [days]

Treat
(Light condition)

Treat
(pH condition)

Treat
(Flow)

Treat
(Blade)
10 
Sample ID
11 
Parameter
(y0 from the fitted exponentia...)
12 
Parameter
(alpha from the fitted exponen...)
13 
Parameter
(beta from the fitted exponent...)
14 
Temp [°C]
15 
T std e [±]
16 
Sal
17 
Sal std e [±]
18 
pH
(total scale, Potentiometric)
19 
pH std e [±]
(total scale, Potentiometric)
20 
AT [µmol/kg]
(Potentiometric titration)
21 
AT std e [±]
(Potentiometric titration)
22 
[NH4]+ [µmol/l]
23 
[NH4]+ std e [±]
24 
[NO3]- + [NO2]- [µmol/l]
25 
[NO3]- + [NO2]- std e [±]
26 
[PO4]3- [µmol/l]
27 
PO4 std e [±]
28 
CSC flag
(Calculated using seacarb afte...)
29 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
30 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
31 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
32 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
33 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
34 
DIC [µmol/kg]
(Calculated using seacarb afte...)
35 
Omega Arg
(Calculated using seacarb afte...)
36 
Omega Cal
(Calculated using seacarb afte...)
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laboratoryEcklonia radiata (macroalga)214344marinespecies.org8lightcurrentfastbryozoan2-167.400168.4000.00000413.190.1236.850.108.090.022099.8226.483.030.373.640.141.260.01812.47318.07319.251710.35151.981874.802.293.58
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laboratoryEcklonia radiata (macroalga)214344marinespecies.org8lightcurrentfastbare80.9910.0060.00818813.190.1236.850.108.090.022099.8226.483.030.373.640.141.260.01812.47318.07319.251710.35151.981874.802.293.58
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laboratoryEcklonia radiata (macroalga)214344marinespecies.org8darkcurrentslowbare18-543.100544.0000.00000413.190.1236.850.108.090.022099.8226.483.030.373.640.141.260.01812.47318.07319.251710.35151.981874.802.293.58
laboratoryEcklonia radiata (macroalga)214344marinespecies.org8darkcurrentfastbryozoan20-275.600276.6000.00000413.190.1236.850.108.090.022099.8226.483.030.373.640.141.260.01812.47318.07319.251710.35151.981874.802.293.58
laboratoryEcklonia radiata (macroalga)214344marinespecies.org8darkcurrentfastbare21-71.16072.1400.00000713.190.1236.850.108.090.022099.8226.483.030.373.640.141.260.01812.47318.07319.251710.35151.981874.802.293.58
laboratoryEcklonia radiata (macroalga)214344marinespecies.org8darkcurrentslowbryozoan22-1406.0001407.0000.00000513.190.1236.850.108.090.022099.8226.483.030.373.640.141.260.01812.47318.07319.251710.35151.981874.802.293.58
laboratoryEcklonia radiata (macroalga)214344marinespecies.org8darkcurrentfastbryozoan23-579.000579.9000.00000513.190.1236.850.108.090.022099.8226.483.030.373.640.141.260.01812.47318.07319.251710.35151.981874.802.293.58
laboratoryEcklonia radiata (macroalga)214344marinespecies.org8darkcurrentslowbryozoan24-2273.0002274.0000.00000513.190.1236.850.108.090.022099.8226.483.030.373.640.141.260.01812.47318.07319.251710.35151.981874.802.293.58
laboratoryEcklonia radiata (macroalga)214344marinespecies.org8lightlowfastbryozoan25-64.56065.5600.00000313.170.1237.250.257.710.012242.7216.933.510.113.150.221.260.02835.74913.34916.732048.6976.502160.931.151.80
laboratoryEcklonia radiata (macroalga)214344marinespecies.org8lightlowfastbare26-92.96093.9400.00000413.170.1237.250.257.710.012242.7216.933.510.113.150.221.260.02835.74913.34916.732048.6976.502160.931.151.80
laboratoryEcklonia radiata (macroalga)214344marinespecies.org8lightlowslowbryozoan281437.000-1436.0000.00000513.170.1237.250.257.710.012242.7216.933.510.113.150.221.260.02835.74913.34916.732048.6976.502160.931.151.80
laboratoryEcklonia radiata (macroalga)214344marinespecies.org8lightlowfastbare294.978-3.9770.00000613.170.1237.250.257.710.012242.7216.933.510.113.150.221.260.02835.74913.34916.732048.6976.502160.931.151.80
laboratoryEcklonia radiata (macroalga)214344marinespecies.org8lightlowslowbare30764.900-763.7000.00000513.170.1237.250.257.710.012242.7216.933.510.113.150.221.260.02835.74913.34916.732048.6976.502160.931.151.80
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laboratoryEcklonia radiata (macroalga)214344marinespecies.org8darklowfastbryozoan33-107.200108.2000.00000413.170.1237.250.257.710.012242.7216.933.510.113.150.221.260.02835.74913.34916.732048.6976.502160.931.151.80
laboratoryEcklonia radiata (macroalga)214344marinespecies.org8darklowfastbare34-20.23021.2200.00000513.170.1237.250.257.710.012242.7216.933.510.113.150.221.260.02835.74913.34916.732048.6976.502160.931.151.80
laboratoryEcklonia radiata (macroalga)214344marinespecies.org8darklowfastbare35-22.39023.3800.00000613.170.1237.250.257.710.012242.7216.933.510.113.150.221.260.02835.74913.34916.732048.6976.502160.931.151.80
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