Moitinho-Silva, Lucas; Díez-Vives, Cristina; Batani, Giampiero; Esteves, Ana IS; Jahn, Martin T; Thomas, Torsten (2018): Genomes from sponge metagenomes from Bare island, Botany bay, Australia: Assembly and Annotation of three Prokaryotic Genomes from Cymbastela concentrica [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.884739, Supplement to: Moitinho-Silva, L et al. (2017): Integrated metabolism in sponge-microbe symbiosis revealed by genome-centered metatranscriptomics. The ISME Journal, 11(7), 1651-1666, https://doi.org/10.1038/ismej.2017.25
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Abstract:
Metadata for genome sequences and annotation submitted to the Integrated Microbial Genomes & Microbiomes (IMG/M) system at the DOE's Joint Genome Institute (JGI).
Coverage:
Latitude: -33.991667 * Longitude: 151.231389
Date/Time Start: 2009-09-15T00:00:00 * Date/Time End: 2009-09-15T00:00:00
Event(s):
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Depth, top/min | Depth top | m | Thomas, Torsten | ||
| 2 | Depth, bottom/max | Depth bot | m | Thomas, Torsten | ||
| 3 | Species | Species | Thomas, Torsten | |||
| 4 | Cell size | Cell size | µm | Thomas, Torsten | Cell fraction | |
| 5 | Sample code/label | Sample label | Thomas, Torsten | |||
| 6 | Domain, biology | Domain | Thomas, Torsten | |||
| 7 | Status | Status | Thomas, Torsten | |||
| 8 | Identification | ID | Thomas, Torsten | IMG Taxon ID | ||
| 9 | Identification | ID | Thomas, Torsten | IMG Genome ID | ||
| 10 | Number | n | # | Thomas, Torsten | Asselmbled Genome Size | |
| 11 | Number | n | # | Thomas, Torsten | Assembled Gene Count | |
| 12 | Uniform resource locator/link to reference | URL ref | Thomas, Torsten |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
36 data points
Data
| 1 Depth top [m] | 2 Depth bot [m] | 3 Species | 4 Cell size [µm] (Cell fraction) | 5 Sample label | 6 Domain | 7 Status | 8 ID (IMG Taxon ID) | 9 ID (IMG Genome ID) | 10 n [#] (Asselmbled Genome Size) | 11 n [#] (Assembled Gene Count) | 12 URL ref |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 7 | 10 | Cymbastela concentrica | <3 | Uncultured Rhizobiales genome | Bacteria | Draft | 2608642157 | 2608642157 | 2116962 | 2434 | img.jgi.doe.gov |
| 7 | 10 | Cymbastela concentrica | <3 | Uncultured Nitrospira genome | Bacteria | Draft | 2608642160 | 2608642160 | 1594656 | 1710 | img.jgi.doe.gov |
| 7 | 10 | Cymbastela concentrica | <3 | Uncultured Thaumarcheaota bin 8 | Archaea | Draft | 2626541593 | 2626541593 | 2161854 | 2798 | img.jgi.doe.gov |