Citation:

s41558-018-0224-8

Name: Seawater carbonate chemistry and electrophysiology data of European sea bass (Dicentrarchus labrax) (figure 2 h-j, 3)
Published: 2018-01-09
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Animalia; Bottles or small containers/Aquaria (<20 L); Chordata; Coast and continental shelf; Dicentrarchus labrax; Laboratory experiment; Nekton; North Atlantic; Other studied parameter or process; Pelagos; Single species; Temperate

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Keyword(s):

Animalia; Bottles or small containers/Aquaria (<20 L); Chordata; Coast and continental shelf; Dicentrarchus labrax; Laboratory experiment; Nekton; North Atlantic; Other studied parameter or process; Pelagos; Single species; Temperate

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2018-01-09.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		Porteus, Cosima S		study
2	Species	Species		Porteus, Cosima S
3	Registration number of species	Reg spec no		Porteus, Cosima S
4	Uniform resource locator/link to reference	URL ref		Porteus, Cosima S		WoRMS Aphia ID
5	Date	Date		Porteus, Cosima S
6	Comment	Comment		Porteus, Cosima S		Odorant
7	Identification	ID		Porteus, Cosima S		fish
8	Figure	Fig		Porteus, Cosima S
9	Treatment	Treat		Porteus, Cosima S
10	Percentage	Perc	%	Porteus, Cosima S		1:1,000,000 dilution, normalized integrated nerve responses with units in % (to the concentrations of odorants listed in the column headings)
11	Percentage	Perc	%	Porteus, Cosima S		1:100,000 dilution, normalized integrated nerve responses with units in % (to the concentrations of odorants listed in the column headings)
12	Percentage	Perc	%	Porteus, Cosima S		1:10,000 dilution, normalized integrated nerve responses with units in % (to the concentrations of odorants listed in the column headings)
13	Percentage	Perc	%	Porteus, Cosima S		1:1,000 dilution, normalized integrated nerve responses with units in % (to the concentrations of odorants listed in the column headings)
14	Percentage	Perc	%	Porteus, Cosima S		1:100 dilution, normalized integrated nerve responses with units in % (to the concentrations of odorants listed in the column headings)
15	Threshold	Threshold		Porteus, Cosima S		detection thresholds expressed as exponents (10 to the exponent)
16	Salinity	Sal		Porteus, Cosima S
17	Temperature, water	Temp	°C	Porteus, Cosima S
18	Carbon, inorganic, dissolved	DIC	µmol/kg	Porteus, Cosima S
19	pH	pH		Porteus, Cosima S		NBS scale
20	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Porteus, Cosima S
21	Alkalinity, total	AT	µmol/kg	Porteus, Cosima S
22	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
23	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
24	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
25	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
26	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
27	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
28	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
29	Alkalinity, total	AT	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
30	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
31	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Size:

1184 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Type (study)	2 Species	3 Reg spec no	4 URL ref (WoRMS Aphia ID)	5 Date	6 Comment (Odorant)	7 ID (fish)	8 Fig	9 Treat	10 Perc [%] (1:1,000,000 dilution, normali...)	11 Perc [%] (1:100,000 dilution, normalize...)	12 Perc [%] (1:10,000 dilution, normalized...)	13 Perc [%] (1:1,000 dilution, normalized ...)	14 Perc [%] (1:100 dilution, normalized in...)	15 Threshold (detection thresholds expresse...)	16 Sal	17 Temp [°C]	18 DIC [µmol/kg]	19 pH (NBS scale)	20 pCO2water_SST_wet [µatm]	21 AT [µmol/kg]	22 CSC flag	23 pH (total scale)	24 CO2 [µmol/kg]	25 fCO2water_SST_wet [µatm]	26 pCO2water_SST_wet [µatm]	27 [HCO3]- [µmol/kg]	28 [CO3]2- [µmol/kg]	29 AT [µmol/kg]	30 Omega Arg	31 Omega Cal
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-05	Intestinal fluid	Bass 16	2 h-j, 3	Control	22.06	34.23	94.73	141.66		5.91	35.59	21.20	2294.78	8.17	453.52	2588.31	27	8.04	14.10	451.17	452.68	2063.42	217.26	2294.78	3.38	5.18
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-06	Intestinal fluid	Bass 17	2 h-j, 3	Control	33.15	49.01	93.08	114.39		6.18	36.34	21.80	2284.51	8.19	429.06	2602.61	27	8.06	13.08	426.92	428.34	2038.02	233.42	2284.51	3.62	5.54
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-10	Intestinal fluid	Bass 18	2 h-j, 3	Control	27.44	41.32	113.07	180.90		5.94	36.33	22.20	2265.67	8.15	472.20	2558.25	27	8.02	14.24	469.90	471.46	2036.11	215.32	2265.67	3.35	5.11
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-10	Intestinal fluid	Bass 19a	2 h-j, 3	Control	23.61	42.15	125.23	228.07		5.27	35.74	20.60	2288.75	8.15	472.52	2565.16	27	8.03	14.92	470.04	471.62	2068.96	204.87	2288.75	3.18	4.88
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-11	Intestinal fluid	Bass 19b	2 h-j, 3	Control	11.91	28.36	98.98	164.93		5.67	36.44	20.80	2293.67	8.17	448.85	2591.15	27	8.05	14.05	446.53	448.04	2060.72	218.90	2293.67	3.38	5.18
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-12	Intestinal fluid	Bass 20	2 h-j, 3	Control	19.94	42.58	106.44	158.68		5.91	36.56	20.60	2280.86	8.20	412.83	2596.90	27	8.08	12.98	410.66	412.05	2036.81	231.07	2280.86	3.56	5.46
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-05	Conspecific bile	Bass 16	2 h-j, 3	Control	27.79	47.95	80.42	103.40		6.75	35.59	21.20	2294.78	8.17	453.52	2588.31	27	8.04	14.10	451.17	452.68	2063.42	217.26	2294.78	3.38	5.18
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-06	Conspecific bile	Bass 17	2 h-j, 3	Control	33.15	49.01	93.08	114.39		6.46	36.34	21.80	2284.51	8.19	429.06	2602.61	27	8.06	13.08	426.92	428.34	2038.02	233.42	2284.51	3.62	5.54
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-10	Conspecific bile	Bass 18	2 h-j, 3	Control	40.28	67.84	110.00	124.09		6.53	36.33	22.20	2265.67	8.15	472.20	2558.25	27	8.02	14.24	469.90	471.46	2036.11	215.32	2265.67	3.35	5.11
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-10	Conspecific bile	Bass 19a	2 h-j, 3	Control	60.21	125.77	186.41	202.91		7.41	35.74	20.60	2288.75	8.15	472.52	2565.16	27	8.03	14.92	470.04	471.62	2068.96	204.87	2288.75	3.18	4.88
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-12	Conspecific bile	Bass 20	2 h-j, 3	Control	39.17	83.09	126.16	145.28		6.84	36.56	20.60	2280.86	8.20	412.83	2596.90	27	8.08	12.98	410.66	412.05	2036.81	231.07	2280.86	3.56	5.46
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-14	Conspecific bile	Bass 22	2 h-j, 3	Control	27.46	55.41	116.62	126.85		6.38	36.92	21.30	2257.05	8.19	420.32	2573.36	27	8.07	12.95	418.20	419.60	2013.77	230.34	2257.05	3.55	5.44
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-12	Alarm cue	Bass 20	2 h-j, 3	Control			17.18	48.49	67.95	4.01	36.56	20.60	2280.86	8.20	412.83	2596.90	27	8.08	12.98	410.66	412.05	2036.81	231.07	2280.86	3.56	5.46
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-14	Alarm cue	Bass 22	2 h-j, 3	Control			31.17	28.42	42.70	4.09	36.92	21.30	2257.05	8.19	420.32	2573.36	27	8.07	12.95	418.20	419.60	2013.77	230.34	2257.05	3.55	5.44
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-17	Alarm cue	Bass 23	2 h-j, 3	Control			17.53	27.77	49.24	4.14	36.68	20.50	2225.95	8.17	433.71	2516.94	27	8.05	13.67	431.46	432.92	2000.53	211.76	2225.95	3.26	5.00
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-20	Alarm cue	Bass 26	2 h-j, 3	Control			21.49	20.71	58.51	4.03	36.44	20.90	2213.90	8.18	422.86	2511.65	27	8.06	13.20	420.69	422.10	1984.32	216.38	2213.90	3.34	5.12
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-21	Alarm cue	Bass 27	2 h-j, 3	Control			8.57	18.46	45.02	3.12	36.82	21.70	2223.78	8.16	448.47	2519.23	27	8.03	13.67	446.26	447.75	1994.98	215.12	2223.78	3.33	5.08
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-24	Alarm cue	Bass 28	2 h-j, 3	Control			24.91	31.33	80.53	4.10	36.74	20.90	2199.61	8.16	440.79	2485.60	27	8.04	13.74	438.56	440.03	1978.31	207.57	2199.61	3.20	4.90
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-26	Alarm cue	Bass 29	2 h-j, 3	Control			20.02	40.91	80.70	6.48	36.95	21.10	2181.49	8.17	426.42	2475.76	27	8.05	13.20	424.30	425.72	1955.85	212.44	2181.49	3.27	5.01
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-28	Alarm cue	Bass 31	2 h-j, 3	Control			18.13	40.39	86.25	4.70	37.02	21.80	2196.98	8.18	421.06	2505.91	27	8.05	12.79	419.01	420.40	1960.96	223.23	2196.98	3.45	5.27
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-05	Intestinal fluid	Bass 16	2 h-j, 3	High CO2	13.13	38.11	99.44	138.30		6.21	35.59	21.20	2445.91	7.78	1245.37	2547.68	27	7.65	38.74	1239.25	1243.41	2308.19	98.98	2445.91	1.54	2.36
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-06	Intestinal fluid	Bass 17	2 h-j, 3	High CO2	25.78	58.92	99.17	132.10		6.31	36.34	21.90	2418.37	7.84	1146.40	2551.54	27	7.71	32.56	1065.75	1069.30	2269.37	116.44	2418.37	1.81	2.76
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-10	Intestinal fluid	Bass 18	2 h-j, 3	High CO2	27.43	40.46	96.93	187.39		5.88	36.33	22.20	2432.43	7.84	1080.42	2567.60	27	7.71	32.60	1075.33	1078.90	2281.68	118.16	2432.43	1.84	2.80
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-10	Intestinal fluid	Bass 19a	2 h-j, 3	High CO2	25.11	54.83	125.04	250.48		5.32	35.74	20.70	2431.42	7.83	1093.15	2551.62	27	7.70	34.44	1087.64	1091.31	2288.21	108.77	2431.42	1.69	2.59
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-11	Intestinal fluid	Bass 19b	2 h-j, 3	High CO2	21.78	30.86	94.75	161.43		5.81	36.44	20.80	2439.79	7.81	1070.85	2555.80	27	7.69	35.89	1140.79	1144.63	2297.41	106.49	2439.79	1.65	2.52
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-12	Intestinal fluid	Bass 20	2 h-j, 3	High CO2	16.27	41.46	114.41	170.24		5.84	36.56	20.60	2440.54	7.84	1064.97	2568.89	27	7.72	33.49	1059.62	1063.20	2293.50	113.55	2440.54	1.75	2.69
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-05	Conspecific bile	Bass 16	2 h-j, 3	High CO2	20.91	47.07	93.59	110.60		6.40	35.59	21.20	2445.91	7.78	1245.37	2547.68	27	7.65	38.74	1239.25	1243.41	2308.19	98.98	2445.91	1.54	2.36
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-06	Conspecific bile	Bass 17	2 h-j, 3	High CO2	34.10	45.21	100.32	149.04		6.21	36.34	21.90	2418.37	7.84	1146.40	2551.54	27	7.71	32.56	1065.75	1069.30	2269.37	116.44	2418.37	1.81	2.76
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-10	Conspecific bile	Bass 18	2 h-j, 3	High CO2	15.93	41.69	94.54	135.50		6.20	36.33	22.20	2432.43	7.84	1080.42	2567.60	27	7.71	32.60	1075.33	1078.90	2281.68	118.16	2432.43	1.84	2.80
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-10	Conspecific bile	Bass 19a	2 h-j, 3	High CO2	40.34	93.99	161.52	158.87		6.25	35.74	20.70	2431.42	7.83	1093.15	2551.62	27	7.70	34.44	1087.64	1091.31	2288.21	108.77	2431.42	1.69	2.59
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-12	Conspecific bile	Bass 20	2 h-j, 3	High CO2	38.21	88.08	160.93	181.41		6.55	36.56	20.60	2440.54	7.84	1064.97	2568.89	27	7.72	33.49	1059.62	1063.20	2293.50	113.55	2440.54	1.75	2.69
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-14	Conspecific bile	Bass 22	2 h-j, 3	High CO2	33.11	61.20	126.36	151.31		6.38	36.92	21.40	2419.54	7.83	1087.85	2548.77	27	7.70	33.42	1082.58	1086.20	2272.33	113.79	2419.54	1.76	2.69
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-12	Alarm cue	Bass 20	2 h-j, 3	High CO2			13.20	18.12	37.18	4.25	36.56	20.60	2440.54	7.84	1064.97	2568.89	27	7.72	33.49	1059.62	1063.20	2293.50	113.55	2440.54	1.75	2.69
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-14	Alarm cue	Bass 22	2 h-j, 3	High CO2			21.16	26.83	25.21	3.66	36.92	21.40	2419.54	7.83	1087.85	2578.61	27	7.70	33.42	1082.58	1086.20	2272.33	113.79	2419.54	1.76	2.69
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-17	Alarm cue	Bass 23	2 h-j, 3	High CO2			18.52	18.74	33.74	4.01	36.68	20.50	2375.99	7.83	1059.88	2498.08	27	7.71	33.41	1054.67	1058.24	2234.51	108.08	2375.99	1.67	2.55
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-20	Alarm cue	Bass 26	2 h-j, 3	High CO2			33.32	25.68	46.68	3.55	36.44	20.90	2348.37	7.83	1053.41	2470.40	27	7.71	32.89	1048.23	1051.76	2207.97	107.52	2348.37	1.66	2.55
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-21	Alarm cue	Bass 27	2 h-j, 3	High CO2			15.94	24.90	43.04	3.56	36.82	21.80	2352.60	7.83	1062.72	2481.10	27	7.70	32.32	1057.72	1061.25	2208.56	111.72	2352.60	1.73	2.64
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-24	Alarm cue	Bass 28	2 h-j, 3	High CO2			15.67	42.26	76.68	3.32	36.74	21.00	2334.58	7.82	1071.59	2453.96	27	7.70	33.31	1066.42	1070.01	2195.66	105.61	2334.58	1.63	2.49
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-26	Alarm cue	Bass 29	2 h-j, 3	High CO2			6.69	28.03	65.85	8.14	36.95	21.20	2321.30	7.83	1041.36	2446.42	27	7.71	32.16	1036.30	1039.78	2180.56	108.58	2321.30	1.67	2.56
laboratory	Dicentrarchus labrax (fish)	126975	marinespecies.org	2014-02-28	Alarm cue	Bass 31	2 h-j, 3	High CO2			23.17	43.81	77.78	3.22	37.02	21.80	2335.67	7.82	1079.24	2460.35	27	7.69	32.79	1074.17	1077.75	2193.89	108.99	2335.67	1.68	2.57