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Stapp, Laura; Parker, Laura M; O'Connor, Wayne A; Bock, Christian; Ross, Pauline M; Pörtner, Hans-Otto; Lannig, Gisela (2018): Tisssue respiration and fractional contribution of ion transporters to total tissue respiration of wild and selected oysters Saccostrea glomerata [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.884107, In supplement to: Stapp, L et al. (2018): Sensitivity to ocean acidification differs between populations of the Sydney rock oyster: Role of filtration and ion-regulatory capacities. Marine Environmental Research, 135, 103-113, https://doi.org/10.1016/j.marenvres.2017.12.017

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Keyword(s):
Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Mollusca; Other metabolic rates; Respiration; Saccostrea glomerata; Single species; South Pacific; Temperate
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Coverage:
Latitude: -32.700000 * Longitude: 152.050000
Date/Time Start: 2015-03-01T00:00:00 * Date/Time End: 2015-03-31T00:00:00
Event(s):
Cromarty_Bay * Latitude: -32.700000 * Longitude: 152.050000 * Date/Time Start: 2015-03-01T00:00:00 * Date/Time End: 2015-03-31T00:00:00 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-12-14.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeStapp, Laurastudy
SpeciesSpeciesStapp, Laura
Registration number of speciesReg spec noStapp, Laura
Uniform resource locator/link to referenceURL refStapp, LauraWoRMS Aphia ID
Experiment durationExp durationdaysStapp, Laura
FigureFigStapp, Laura
TableTabStapp, Laura
TreatmentTreatStapp, Laura
IdentificationIDStapp, Lauratank
10 CategoryCatStapp, Lauraoyster line
11 IdentificationIDStapp, Lauraanimal
12 Oxygen consumption, per proteinO2 con/proteinµmol/g/minStapp, LauraMantle tissue, total
13 PercentagePerc%Stapp, LauraMantle tissue,Na+/K+-ATPase, % to total oxygen consumption
14 Oxygen demand, net, per dry massO2 demnmol/mg/minStapp, LauraMantle tissue,Na+/K+-ATPase
15 PercentagePerc%Stapp, LauraMantle tissue,Na+/H+-exchanger, % to total oxygen consumption
16 Oxygen demand, net, per dry massO2 demnmol/mg/minStapp, LauraMantle tissue,Na+/H+-exchanger
17 PercentagePerc%Stapp, LauraMantle tissue,H+-ATPase, % to total oxygen consumption
18 Oxygen demand, net, per dry massO2 demnmol/mg/minStapp, LauraMantle tissue,H+-ATPase
19 Oxygen consumption, per proteinO2 con/proteinµmol/g/minStapp, LauraGill tissue, total
20 PercentagePerc%Stapp, LauraGill tissue,Na+/K+-ATPase, % to total oxygen consumption
21 Oxygen demand, net, per dry massO2 demnmol/mg/minStapp, LauraGill tissue,Na+/K+-ATPase
22 PercentagePerc%Stapp, LauraGill tissue,Na+/H+-exchanger, % to total oxygen consumption
23 Oxygen demand, net, per dry massO2 demnmol/mg/minStapp, LauraGill tissue,Na+/H+-exchanger
24 PercentagePerc%Stapp, LauraGill tissue,H+-ATPase, % to total oxygen consumption
25 Oxygen demand, net, per dry massO2 demnmol/mg/minStapp, LauraGill tissue,H+-ATPase
26 SalinitySalStapp, Laura
27 Temperature, waterTemp°CStapp, Laura
28 pHpHStapp, LauraNBS scale
29 Alkalinity, totalATµmol/kgStapp, Laura
30 Carbon, inorganic, dissolvedDICµmol/kgStapp, Laura
31 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmStapp, LauraCalculated using CO2SYS
32 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetPaStapp, LauraCalculated using CO2SYS
33 Calcite saturation stateOmega CalStapp, LauraCalculated using CO2SYS
34 Aragonite saturation stateOmega ArgStapp, LauraCalculated using CO2SYS
35 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
37 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Size:
1890 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Exp duration [days]

Fig

Tab

Treat

ID
(tank)
10 
Cat
(oyster line)
11 
ID
(animal)
12 
O2 con/protein [µmol/g/min]
(Mantle tissue, total)
13 
Perc [%]
(Mantle tissue,Na+/K+-ATPase, ...)
14 
O2 dem [nmol/mg/min]
(Mantle tissue,Na+/K+-ATPase)
15 
Perc [%]
(Mantle tissue,Na+/H+-exchange...)
16 
O2 dem [nmol/mg/min]
(Mantle tissue,Na+/H+-exchanger)
17 
Perc [%]
(Mantle tissue,H+-ATPase, % to...)
18 
O2 dem [nmol/mg/min]
(Mantle tissue,H+-ATPase)
19 
O2 con/protein [µmol/g/min]
(Gill tissue, total)
20 
Perc [%]
(Gill tissue,Na+/K+-ATPase, % ...)
21 
O2 dem [nmol/mg/min]
(Gill tissue,Na+/K+-ATPase)
22 
Perc [%]
(Gill tissue,Na+/H+-exchanger,...)
23 
O2 dem [nmol/mg/min]
(Gill tissue,Na+/H+-exchanger)
24 
Perc [%]
(Gill tissue,H+-ATPase, % to t...)
25 
O2 dem [nmol/mg/min]
(Gill tissue,H+-ATPase)
26 
Sal
27 
Temp [°C]
28 
pH
(NBS scale)
29 
AT [µmol/kg]
30 
DIC [µmol/kg]
31 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
32 
pCO2water_SST_wet [Pa]
(Calculated using CO2SYS)
33 
Omega Cal
(Calculated using CO2SYS)
34 
Omega Arg
(Calculated using CO2SYS)
35 
CSC flag
(Calculated using seacarb afte...)
36 
pH
(total scale, Calculated using...)
37 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
38 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
39 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
40 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
41 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
42 
Omega Arg
(Calculated using seacarb afte...)
43 
Omega Cal
(Calculated using seacarb afte...)
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control1Wild60.43213.2970.0685.9890.0241.13010.1590.10645.0070.6584.6620.04234.5223.848.092399.492156.21540.3054.734.352.86157.9515.78538.40540.151959.87180.562.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control1Wild733.5040.33537.4300.45027.3570.3381.48019.2590.32814.3030.18118.2720.36534.5223.848.092399.492156.21540.3054.734.352.86157.9515.78538.40540.151959.87180.562.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control1Wild80.22921.5920.04415.0960.0341.49024.5840.63637.8890.26424.2510.41234.5223.848.092399.492156.21540.3054.734.352.86157.9515.78538.40540.151959.87180.562.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control1Wild100.4416.5290.03510.9090.0360.7524.9660.04219.5020.12534.5223.848.092399.492156.21540.3054.734.352.86157.9515.78538.40540.151959.87180.562.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control2Wild60.36321.9270.0727.6460.0281.20214.7450.19249.4040.45510.2510.12634.5523.708.092399.492155.87536.6154.364.352.86157.9615.73534.76536.501959.45180.702.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control2Wild70.32221.1830.0698.3280.0312.9270.0090.80116.5320.14516.8960.22916.6570.13634.5523.708.092399.492155.87536.6154.364.352.86157.9615.73534.76536.501959.45180.702.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control2Wild90.28623.9770.07013.9730.0350.5216.9720.0350.6790.00534.5523.708.092399.492155.87536.6154.364.352.86157.9615.73534.76536.501959.45180.702.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control2Wild100.23729.2560.0691.6040.0050.80522.0070.1779.7210.08510.7960.08734.5523.708.092399.492155.87536.6154.364.352.86157.9615.73534.76536.501959.45180.702.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control3Wild60.3801.4590.0137.1940.0352.5540.0070.95810.4320.0948.5270.09134.5523.868.092399.492155.66539.5554.664.362.86157.9515.75537.76539.501959.04180.882.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control3Wild70.40514.6320.0762.5790.0103.1610.0131.0582.1540.02321.5410.23234.5523.868.092399.492155.66539.5554.664.362.86157.9515.75537.76539.501959.04180.882.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control3Wild80.3676.4120.0380.97520.1230.2094.4410.04034.5523.868.092399.492155.66539.5554.664.362.86157.9515.75537.76539.501959.04180.882.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control3Wild100.35820.7580.09313.4240.0460.62022.7500.16811.9750.06534.5523.868.092399.492155.66539.5554.664.362.86157.9515.75537.76539.501959.04180.882.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO21Wild70.6588.3920.05413.4330.0951.12519.2820.23134.5223.877.812399.492283.641128.76114.342.511.64157.6732.941125.181128.842146.73103.971.652.51
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO21Wild80.51222.6900.1661.17317.0460.18718.5230.2424.9480.05934.5223.877.812399.492283.641128.76114.342.511.64157.6732.941125.181128.842146.73103.971.652.51
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO21Wild90.32123.6240.07211.6070.0371.1464.5890.06239.9750.55134.5223.877.812399.492283.641128.76114.342.511.64157.6732.941125.181128.842146.73103.971.652.51
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO21Wild100.46318.3130.08425.5120.12928.5350.1500.90612.1230.11237.6570.3529.2110.07234.5223.877.812399.492283.641128.76114.342.511.64157.6732.941125.181128.842146.73103.971.652.51
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO22Wild60.42522.3820.10414.5930.0551.1840.0050.87513.9830.12457.3590.5427.1770.07234.5523.867.802399.492287.881161.66117.682.451.61157.6633.921157.901161.662152.32101.641.612.45
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO22Wild70.32219.0890.0513.4150.01117.1830.0481.02320.9040.2362.3340.01934.5523.867.802399.492287.881161.66117.682.451.61157.6633.921157.901161.662152.32101.641.612.45
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO22Wild80.4749.0740.0411.09112.7220.16434.5523.867.802399.492287.881161.66117.682.451.61157.6633.921157.901161.662152.32101.641.612.45
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO22Wild90.44124.3100.09620.9830.12617.5930.0630.94533.0700.25250.1610.53115.6180.18934.5523.867.802399.492287.881161.66117.682.451.61157.6633.921157.901161.662152.32101.641.612.45
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO23Wild70.4603.5800.0125.4670.0162.5350.0190.8005.6350.04543.8900.41117.0080.10134.7023.987.802399.492287.021161.66117.682.461.61157.6633.791158.091161.842151.12102.111.622.46
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO23Wild87.9350.0157.8760.0220.6790.08434.7023.987.802399.492287.021161.66117.682.461.61157.6633.791158.091161.842151.12102.111.622.46
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO23Wild90.57329.6330.3289.3590.04817.4800.0790.6880.3320.0031.1710.00734.7023.987.802399.492287.021161.66117.682.461.61157.6633.791158.091161.842151.12102.111.622.46
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO23Wild100.33624.2030.10018.0790.05419.9030.0590.97322.6700.28118.3520.2271.2020.01134.7023.987.802399.492287.021161.66117.682.461.61157.6633.791158.091161.842151.12102.111.622.46
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control1Selected60.3985.9860.0435.9860.0230.8129.0320.07716.0210.10040.9450.49434.5223.848.092399.492156.21540.3054.734.352.86157.9515.78538.40540.151959.87180.562.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control1Selected70.47815.0230.07420.4190.02120.4190.0790.84721.6730.17615.7250.14734.5223.848.092399.492156.21540.3054.734.352.86157.9515.78538.40540.151959.87180.562.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control1Selected80.3380.0911.11022.9220.3097.7180.04234.5223.848.092399.492156.21540.3054.734.352.86157.9515.78538.40540.151959.87180.562.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control1Selected90.37515.8690.0479.1530.0479.1530.0401.09916.0260.2339.1310.0809.0570.09034.5223.848.092399.492156.21540.3054.734.352.86157.9515.78538.40540.151959.87180.562.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control2Selected70.2910.8860.00221.5930.01521.5930.0690.82912.0800.09422.0440.17234.5523.708.092399.492155.87536.6154.364.352.86157.9615.73534.76536.501959.45180.702.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control2Selected80.31629.7890.28234.5523.708.092399.492155.87536.6154.364.352.86157.9615.73534.76536.501959.45180.702.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control2Selected90.35210.2840.03715.1110.04215.1110.0550.58119.9980.10819.6680.20934.5523.708.092399.492155.87536.6154.364.352.86157.9615.73534.76536.501959.45180.702.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control2Selected120.4703.1300.02517.5150.01617.5150.0750.92515.1610.11524.3150.25734.5523.708.092399.492155.87536.6154.364.352.86157.9615.73534.76536.501959.45180.702.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control3Selected62.5180.1432.5180.0170.75613.7970.14611.5310.08934.5523.868.092399.492155.66539.5554.664.362.86157.9515.75537.76539.501959.04180.882.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control3Selected70.25618.9840.0513.4770.0403.4770.0100.61218.0190.08412.6890.08134.5523.868.092399.492155.66539.5554.664.362.86157.9515.75537.76539.501959.04180.882.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control3Selected80.3329.9860.0280.0390.6986.2920.0517.7260.04934.5523.868.092399.492155.66539.5554.664.362.86157.9515.75537.76539.501959.04180.882.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3Control3Selected100.27429.6860.09621.8990.11421.8990.0550.81019.9820.1967.7260.0505.1270.04634.5523.868.092399.492155.66539.5554.664.362.86157.9515.75537.76539.501959.04180.882.864.36
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO21Selected70.3540.3840.00118.2060.0735.0540.0170.80218.8940.16449.3370.4503.3450.02934.5223.877.812399.492283.641128.76114.342.511.64157.6732.941125.181128.842146.73103.971.652.51
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO21Selected80.30518.8250.0714.6230.01415.2140.0340.5746.9960.04042.9730.26334.5223.877.812399.492283.641128.76114.342.511.64157.6732.941125.181128.842146.73103.971.652.51
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO21Selected100.35515.3590.0653.8440.01411.1820.0350.6581.5990.01112.8530.07834.5223.877.812399.492283.641128.76114.342.511.64157.6732.941125.181128.842146.73103.971.652.51
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO22Selected60.47119.3320.12216.8710.0710.5654.3120.02521.0360.2076.9070.03834.5523.867.802399.492287.881161.66117.682.451.61157.6633.921157.901161.662152.32101.641.612.45
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO22Selected70.31717.0110.1185.5200.0190.8608.1500.0897.3890.13934.5523.867.802399.492287.881161.66117.682.451.61157.6633.921157.901161.662152.32101.641.612.45
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO22Selected80.62210.8290.0187.1580.0490.94817.9530.17938.0890.2839.9760.11034.5523.867.802399.492287.881161.66117.682.451.61157.6633.921157.901161.662152.32101.641.612.45
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO22Selected100.40125.2020.09021.8810.10210.0970.0370.99822.4650.2719.6140.08537.4700.41934.5523.867.802399.492287.881161.66117.682.451.61157.6633.921157.901161.662152.32101.641.612.45
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO23Selected60.42218.1160.0770.81114.3870.1511.6200.01334.7023.987.802399.492287.021161.66117.682.461.61157.6633.791158.091161.842151.12102.111.622.46
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO23Selected70.46719.2300.06327.9260.13413.9760.0790.7607.5130.06021.5320.14012.0150.15334.7023.987.802399.492287.021161.66117.682.461.61157.6633.791158.091161.842151.12102.111.622.46
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO23Selected80.22913.1700.06120.6420.0560.54310.6380.07216.3380.13234.7023.987.802399.492287.021161.66117.682.461.61157.6633.791158.091161.842151.12102.111.622.46
laboratorySaccostrea glomerata (mollusk)397183marinespecies.org49Figure 4Table 3CO23Selected90.3635.8480.0141.06618.2910.21620.3190.14314.7200.15734.7023.987.802399.492287.021161.66117.682.461.61157.6633.791158.091161.842151.12102.111.622.46