Citation:

j.marenvres.2017.12.017

Name: Extracellular acid-base parameters of wild and selected Saccostrea glomerata
Published: 2018
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Acid-base regulation; Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Mollusca; Saccostrea glomerata; Single species; South Pacific; Temperate

Always quote citation above when using data! You can download the citation in several formats below.

RIS Citation BibTeX Citation Text Citation Facebook TwitterShow Map Google Earth

Keyword(s):

Acid-base regulation; Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Mollusca; Saccostrea glomerata; Single species; South Pacific; Temperate

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb

Coverage:

Latitude: -32.700000 * Longitude: 152.050000

Date/Time Start: 2015-03-01T00:00:00 * Date/Time End: 2015-03-31T00:00:00

Event(s):

Cromarty_Bay * Latitude: -32.700000 * Longitude: 152.050000 * Date/Time Start: 2015-03-01T00:00:00 * Date/Time End: 2015-03-31T00:00:00 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-12-14.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		Stapp, Laura		study
2	Species	Species		Stapp, Laura
3	Registration number of species	Reg spec no		Stapp, Laura
4	Uniform resource locator/link to reference	URL ref		Stapp, Laura		WoRMS Aphia ID
5	Experiment duration	Exp duration	days	Stapp, Laura
6	Figure	Fig		Stapp, Laura
7	Treatment	Treat		Stapp, Laura
8	Identification	ID		Stapp, Laura		tank
9	Category	Cat		Stapp, Laura		oyster line
10	Identification	ID		Stapp, Laura		animal
11	pH, extracellular	pHe		Stapp, Laura		NBS scale
12	Haemolymph, partial pressure of carbon dioxide	pCO2 (ha)	kPa	Stapp, Laura
13	Haemolymph, bicarbonate ion	[HCO3]- (ha)	mmol/l	Stapp, Laura
14	Salinity	Sal		Stapp, Laura
15	Temperature, water	Temp	°C	Stapp, Laura
16	pH	pH		Stapp, Laura		NBS scale
17	Alkalinity, total	AT	µmol/kg	Stapp, Laura
18	Carbon, inorganic, dissolved	DIC	µmol/kg	Stapp, Laura
19	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Stapp, Laura	Calculated using CO2SYS
20	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	Pa	Stapp, Laura	Calculated using CO2SYS
21	Calcite saturation state	Omega Cal		Stapp, Laura	Calculated using CO2SYS
22	Aragonite saturation state	Omega Arg		Stapp, Laura	Calculated using CO2SYS
23	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
24	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
25	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
26	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
27	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
28	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
29	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
30	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
31	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Size:

1333 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Type (study)	2 Species	3 Reg spec no	4 URL ref (WoRMS Aphia ID)	5 Exp duration [days]	6 Fig	7 Treat	8 ID (tank)	9 Cat (oyster line)	10 ID (animal)	11 pHe (NBS scale)	12 pCO2 (ha) [kPa]	13 [HCO3]- (ha) [mmol/l]	14 Sal	15 Temp [°C]	16 pH (NBS scale)	17 AT [µmol/kg]	18 DIC [µmol/kg]	19 pCO2water_SST_wet [µatm] (Calculated using CO2SYS)	20 pCO2water_SST_wet [Pa] (Calculated using CO2SYS)	21 Omega Cal (Calculated using CO2SYS)	22 Omega Arg (Calculated using CO2SYS)	23 CSC flag (Calculated using seacarb afte...)	24 pH (total scale, Calculated using...)	25 CO2 [µmol/kg] (Calculated using seacarb afte...)	26 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	27 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	28 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	29 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	30 Omega Arg (Calculated using seacarb afte...)	31 Omega Cal (Calculated using seacarb afte...)
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	1	Wild	2	7.552	0.201	1.693	34.52	23.84	8.09	2399.49	2156.21	540.30	54.73	4.35	2.86	15	7.95	15.78	538.40	540.15	1959.87	180.56	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	1	Wild	3	7.522	0.273	2.434	34.52	23.84	8.09	2399.49	2156.21	540.30	54.73	4.35	2.86	15	7.95	15.78	538.40	540.15	1959.87	180.56	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	1	Wild	4	7.585	0.128	1.170	34.52	23.84	8.09	2399.49	2156.21	540.30	54.73	4.35	2.86	15	7.95	15.78	538.40	540.15	1959.87	180.56	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	1	Wild	5	7.532	0.172	1.375	34.52	23.84	8.09	2399.49	2156.21	540.30	54.73	4.35	2.86	15	7.95	15.78	538.40	540.15	1959.87	180.56	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	2	Wild	2	7.529	0.160	1.270	34.55	23.70	8.09	2399.49	2155.87	536.61	54.36	4.35	2.86	15	7.96	15.73	534.76	536.50	1959.45	180.70	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	2	Wild	3	7.563	0.198	1.708	34.55	23.70	8.09	2399.49	2155.87	536.61	54.36	4.35	2.86	15	7.96	15.73	534.76	536.50	1959.45	180.70	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	2	Wild	4	7.565	0.179	1.550	34.55	23.70	8.09	2399.49	2155.87	536.61	54.36	4.35	2.86	15	7.96	15.73	534.76	536.50	1959.45	180.70	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	2	Wild	5	7.506	0.168	1.263	34.55	23.70	8.09	2399.49	2155.87	536.61	54.36	4.35	2.86	15	7.96	15.73	534.76	536.50	1959.45	180.70	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	3	Wild	2	7.576	0.155	1.380	34.55	23.86	8.09	2399.49	2155.66	539.55	54.66	4.36	2.86	15	7.95	15.75	537.76	539.50	1959.04	180.88	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	3	Wild	3	7.393	0.248	1.419	34.55	23.86	8.09	2399.49	2155.66	539.55	54.66	4.36	2.86	15	7.95	15.75	537.76	539.50	1959.04	180.88	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	3	Wild	4	7.552	0.126	1.062	34.55	23.86	8.09	2399.49	2155.66	539.55	54.66	4.36	2.86	15	7.95	15.75	537.76	539.50	1959.04	180.88	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	3	Wild	5	7.570	0.182	1.599	34.55	23.86	8.09	2399.49	2155.66	539.55	54.66	4.36	2.86	15	7.95	15.75	537.76	539.50	1959.04	180.88	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	1	Wild	3	7.386	0.259	1.461	34.52	23.87	7.81	2399.49	2283.64	1128.76	114.34	2.51	1.64	15	7.67	32.94	1125.18	1128.84	2146.73	103.97	1.65	2.51
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	1	Wild	4	7.490	0.175	1.266	34.52	23.87	7.81	2399.49	2283.64	1128.76	114.34	2.51	1.64	15	7.67	32.94	1125.18	1128.84	2146.73	103.97	1.65	2.51
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	1	Wild	5	7.503	0.184	1.373	34.52	23.87	7.81	2399.49	2283.64	1128.76	114.34	2.51	1.64	15	7.67	32.94	1125.18	1128.84	2146.73	103.97	1.65	2.51
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	1	Wild	6	7.226	0.444	1.708	34.52	23.87	7.81	2399.49	2283.64	1128.76	114.34	2.51	1.64	15	7.67	32.94	1125.18	1128.84	2146.73	103.97	1.65	2.51
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	2	Wild	2	7.406	0.222	1.313	34.55	23.86	7.80	2399.49	2287.88	1161.66	117.68	2.45	1.61	15	7.66	33.92	1157.90	1161.66	2152.32	101.64	1.61	2.45
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	2	Wild	3	7.413	0.263	1.579	34.55	23.86	7.80	2399.49	2287.88	1161.66	117.68	2.45	1.61	15	7.66	33.92	1157.90	1161.66	2152.32	101.64	1.61	2.45
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	2	Wild	4	7.438	0.214	1.365	34.55	23.86	7.80	2399.49	2287.88	1161.66	117.68	2.45	1.61	15	7.66	33.92	1157.90	1161.66	2152.32	101.64	1.61	2.45
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	2	Wild	5	7.401	0.233	1.360	34.55	23.86	7.80	2399.49	2287.88	1161.66	117.68	2.45	1.61	15	7.66	33.92	1157.90	1161.66	2152.32	101.64	1.61	2.45
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	3	Wild	2	7.471	0.183	1.264	34.70	23.98	7.80	2399.49	2287.02	1161.66	117.68	2.46	1.61	15	7.66	33.79	1158.09	1161.84	2151.12	102.11	1.62	2.46
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	3	Wild	3	7.403	0.304	1.785	34.70	23.98	7.80	2399.49	2287.02	1161.66	117.68	2.46	1.61	15	7.66	33.79	1158.09	1161.84	2151.12	102.11	1.62	2.46
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	3	Wild	4	7.144	0.396	1.426	34.70	23.98	7.80	2399.49	2287.02	1161.66	117.68	2.46	1.61	15	7.66	33.79	1158.09	1161.84	2151.12	102.11	1.62	2.46
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	3	Wild	5	7.502	0.212	1.582	34.70	23.98	7.80	2399.49	2287.02	1161.66	117.68	2.46	1.61	15	7.66	33.79	1158.09	1161.84	2151.12	102.11	1.62	2.46
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	1	Selected	2	7.455	0.286	1.898	34.52	23.84	8.09	2399.49	2156.21	540.30	54.73	4.35	2.86	15	7.95	15.78	538.40	540.15	1959.87	180.56	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	1	Selected	3	7.534	0.179	1.438	34.52	23.84	8.09	2399.49	2156.21	540.30	54.73	4.35	2.86	15	7.95	15.78	538.40	540.15	1959.87	180.56	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	1	Selected	4	7.527	0.201	1.594	34.52	23.84	8.09	2399.49	2156.21	540.30	54.73	4.35	2.86	15	7.95	15.78	538.40	540.15	1959.87	180.56	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	1	Selected	5	7.597	0.166	1.554	34.52	23.84	8.09	2399.49	2156.21	540.30	54.73	4.35	2.86	15	7.95	15.78	538.40	540.15	1959.87	180.56	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	2	Selected	2	7.547	0.129	1.071	34.55	23.70	8.09	2399.49	2155.87	536.61	54.36	4.35	2.86	15	7.96	15.73	534.76	536.50	1959.45	180.70	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	2	Selected	3	7.511	0.167	1.268	34.55	23.70	8.09	2399.49	2155.87	536.61	54.36	4.35	2.86	15	7.96	15.73	534.76	536.50	1959.45	180.70	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	2	Selected	4	7.567	0.134	1.168	34.55	23.70	8.09	2399.49	2155.87	536.61	54.36	4.35	2.86	15	7.96	15.73	534.76	536.50	1959.45	180.70	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	3	Selected	2	7.298	0.318	1.451	34.55	23.86	8.09	2399.49	2155.66	539.55	54.66	4.36	2.86	15	7.95	15.75	537.76	539.50	1959.04	180.88	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	3	Selected	3	7.588	0.169	1.553	34.55	23.86	8.09	2399.49	2155.66	539.55	54.66	4.36	2.86	15	7.95	15.75	537.76	539.50	1959.04	180.88	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	Control	3	Selected	4	7.487	0.291	2.087	34.55	23.86	8.09	2399.49	2155.66	539.55	54.66	4.36	2.86	15	7.95	15.75	537.76	539.50	1959.04	180.88	2.86	4.36
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	1	Selected	2	7.509	0.210	1.592	34.52	23.87	7.81	2399.49	2283.64	1128.76	114.34	2.51	1.64	15	7.67	32.94	1125.18	1128.84	2146.73	103.97	1.65	2.51
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	1	Selected	3	7.465	0.292	1.987	34.52	23.87	7.81	2399.49	2283.64	1128.76	114.34	2.51	1.64	15	7.67	32.94	1125.18	1128.84	2146.73	103.97	1.65	2.51
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	1	Selected	4	7.525	0.127	0.999	34.52	23.87	7.81	2399.49	2283.64	1128.76	114.34	2.51	1.64	15	7.67	32.94	1125.18	1128.84	2146.73	103.97	1.65	2.51
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	2	Selected	2	7.473	0.190	1.321	34.55	23.86	7.80	2399.49	2287.88	1161.66	117.68	2.45	1.61	15	7.66	33.92	1157.90	1161.66	2152.32	101.64	1.61	2.45
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	2	Selected	3	7.459	0.213	1.429	34.55	23.86	7.80	2399.49	2287.88	1161.66	117.68	2.45	1.61	15	7.66	33.92	1157.90	1161.66	2152.32	101.64	1.61	2.45
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	3	Selected	2	7.481	0.134	0.951	34.70	23.98	7.80	2399.49	2287.02	1161.66	117.68	2.46	1.61	15	7.66	33.79	1158.09	1161.84	2151.12	102.11	1.62	2.46
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	3	Selected	3	7.424	0.189	1.164	34.70	23.98	7.80	2399.49	2287.02	1161.66	117.68	2.46	1.61	15	7.66	33.79	1158.09	1161.84	2151.12	102.11	1.62	2.46
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	3	Selected	4	7.496	0.225	1.652	34.70	23.98	7.80	2399.49	2287.02	1161.66	117.68	2.46	1.61	15	7.66	33.79	1158.09	1161.84	2151.12	102.11	1.62	2.46
laboratory	Saccostrea glomerata (mollusk)	397183	marinespecies.org	49	Figure 1, 2	CO2	3	Selected	5	7.402	0.288	1.685	34.70	23.98	7.80	2399.49	2287.02	1161.66	117.68	2.46	1.61	15	7.66	33.79	1158.09	1161.84	2151.12	102.11	1.62	2.46