Citation:

PANGAEA.880576

Name: Seawater carbonate chemistry and growth, nitrogen availability, photosynthesis of Thalassiosira pseudonana
Published: 2018
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Chromista; Growth/Morphology; Laboratory experiment; Laboratory strains; Light; Macro-nutrients; Not applicable; Ochrophyta; Pelagos; Phytoplankton; Primary production/Photosynthesis; Single species; Thalassiosira pseudonana

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Keyword(s):

Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Chromista; Growth/Morphology; Laboratory experiment; Laboratory strains; Light; Macro-nutrients; Not applicable; Ochrophyta; Pelagos; Phytoplankton; Primary production/Photosynthesis; Single species; Thalassiosira pseudonana

Related to:

Li, Futian; Beardall, John; Gao, Kunshan; Sathyendranath, Shubha (2018): Diatom performance in a future ocean: interactions between nitrogen limitation, temperature, and CO2-induced seawater acidification. ICES Journal of Marine Science, 75(4), 1451-1464, https://doi.org/10.1093/icesjms/fsx239

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-09-13.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		Li, Futian		study
2	Species	Species		Li, Futian
3	Registration number of species	Reg spec no		Li, Futian
4	Uniform resource locator/link to reference	URL ref		Li, Futian		WoRMS Aphia ID
5	Treatment	Treat		Li, Futian
6	Replicate	Repl		Li, Futian
7	Growth rate	µ	1/day	Li, Futian
8	Cell size	Cell size	µm	Li, Futian
9	Chlorophyll a per cell	Chl a/cell	pg/#	Li, Futian
10	Biogenic silica, per cell	bSiO2/cell	fmol/#	Li, Futian
11	Particulate organic carbon, per cell	POC/cell	pmol/#	Li, Futian
12	Particulate organic nitrogen per cell	PON/cell	pmol/#	Li, Futian
13	Carbon/Nitrogen ratio	C/N		Li, Futian
14	Silicon/Carbon, molar ratio	Si/C		Li, Futian
15	Irradiance	E	µmol/m²/s	Li, Futian
16	Electron transport rate of photosystem II	ETR PSII		Li, Futian		relative
17	Photosynthetic carbon fixation rate, per cell	C fix/cell	pg/#/h	Li, Futian
18	Respiration rate, oxygen, per cell	Resp O2/cell	fmol/#/h	Li, Futian		Dark
19	Maximum photochemical quantum yield of photosystem II	Fv/Fm		Li, Futian
20	Effective photochemical quantum yield	phi PS II		Li, Futian
21	Slope to saturation of photocenters	alpha		Li, Futian
22	Maximal electron transport rate, relative	rETR max		Li, Futian
23	Light saturation point	Ik	µmol/m²/s	Li, Futian
24	Salinity	Sal		Li, Futian
25	Temperature, water	Temp	°C	Li, Futian
26	Nitrate	[NO3]-	µmol/l	Li, Futian
27	pH	pH		Li, Futian		NBS scale
28	Alkalinity, total	AT	µmol/kg	Li, Futian
29	Carbon, inorganic, dissolved	DIC	µmol/kg	Li, Futian
30	Bicarbonate ion	[HCO3]-	µmol/kg	Li, Futian
31	Carbon dioxide	CO2	µmol/kg	Li, Futian
32	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
33	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
34	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
35	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
36	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
37	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
38	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
39	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
40	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
41	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

8424 data points

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