Citation:

fwb.13100

Name: Site-based landscape and environmental factors and ranavirus epidemiology in an amphibian assemblage within the East Bay region, California
Published: 2017-08-07
License: https://creativecommons.org/licenses/by/3.0/

Always quote citation above when using data! You can download the citation in several formats below.

Published: 2017-08-07 • DOI registered: 2017-09-04

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New version:

Tornabene, Brian J; Hoverman, Jason T (2018): The influence of landscape and environmental factors on ranavirus epidemiology in a California amphibian assemblage. Purdue University Research Repository, https://doi.org/10.4231/R7MW2FBT

Source:

Original files in xls/csv format [dataset]. Tornabene_original.zip

Coverage:

Median Latitude: 37.623615 * Median Longitude: -121.951154 * South-bound Latitude: 37.085614 * West-bound Longitude: -122.244778 * North-bound Latitude: 37.961364 * East-bound Longitude: -121.639640

Minimum ORDINAL NUMBER: 1 * Maximum ORDINAL NUMBER: 76

Event(s):

East_Bay_CA * Latitude Start: 37.970000 * Longitude Start: -122.240000 * Latitude End: 37.080000 * Longitude End: -121.600000 * Location: California, USA * Method/Device: Biology (BIO)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Comment
1	ORDINAL NUMBER	Ord No		Tornabene, Brian J	Geocode
2	Sampling date	Sampling date		Tornabene, Brian J	year
3	Site	Site		Tornabene, Brian J
4	Number of individuals	Ind No	#	Tornabene, Brian J	dissected
5	Number of individuals	Ind No	#	Tornabene, Brian J	swabbed for Batrachochytrium dendrobatidis
6	Number of individuals	Ind No	#	Tornabene, Brian J	infected with Batrachochytrium dendrobatidis
7	Presence/absence	Presence/absence		Tornabene, Brian J	infection with Batrachochytrium dendrobatidis
8	Number	No		Tornabene, Brian J	Average amphibian Batrachochytrium dendrobatidis load
9	Number of individuals	Ind No	#	Tornabene, Brian J	infected with Echinostome spp.
10	Presence/absence	Presence/absence		Tornabene, Brian J	infection with Echinostome spp.
11	Number	No		Tornabene, Brian J	Average amphibian parasite load for Echinostome spp.
12	Number of individuals	Ind No	#	Tornabene, Brian J	infected with Ribeiroia ondatrae
13	Presence/absence	Presence/absence		Tornabene, Brian J	infection with Ribeiroia ondatrae
14	Number	No		Tornabene, Brian J	Average amphibian Ribeiroia ondatrae load
15	Presence/absence	Presence/absence		Tornabene, Brian J	infection with Ranavirus
16	Amphibia	Amphibia	#	Tornabene, Brian J	total, tested for Ranavirus
17	Amphibia	Amphibia	#	Tornabene, Brian J	total, infected with Ranavirus
18	Ranavirus prevalence	Ranavirus prev		Tornabene, Brian J	all species
19	Number	No		Tornabene, Brian J	of infections (BD, EC, or RO)
20	Number	No		Tornabene, Brian J	of infections (BD, EC, RO, or RVP)
21	Comment	Comment		Tornabene, Brian J	temperature measured? (0/1)
22	Comment	Comment		Tornabene, Brian J	full sample collected? (0/1)
23	LATITUDE	Latitude		Tornabene, Brian J	Geocode
24	LONGITUDE	Longitude		Tornabene, Brian J	Geocode
25	Distance to landmark	Distance	arbitrary units	Tornabene, Brian J	Euclidean, nearest neighbor Great Circle
26	Distance to landmark	Distance	arbitrary units	Tornabene, Brian J	Euclidean, nearest neighbor Great Circle *1000
27	Distance	Distance	km	Tornabene, Brian J	Euclidean, to nearest wetland
28	Distance	Distance	km	Tornabene, Brian J	Euclidean, to nearest Ranavirus infected wetland
29	Presence/absence	Presence/absence		Tornabene, Brian J	Pond
30	Vegetation, cover	Veg cov	%	Tornabene, Brian J	shoreline
31	Percentage	Perc	%	Tornabene, Brian J	wetland
32	Land use	Land use		Tornabene, Brian J
33	Percentage	Perc	%	Tornabene, Brian J	forest surrounding
34	Perimeter	Perimeter	m	Tornabene, Brian J	of pond
35	Area	Area	m²	Tornabene, Brian J	of pond
36	Presence/absence	Presence/absence		Tornabene, Brian J	of cattle
37	Presence/absence	Presence/absence		Tornabene, Brian J	of fish
38	Presence/absence	Presence/absence		Tornabene, Brian J	of bullfrogs
39	Presence/absence	Presence/absence		Tornabene, Brian J	of Batrachochytrium dendrobatidis
40	Conductivity, electrolytic	EC	µS/cm	Tornabene, Brian J
41	Total dissolved solids	TDS	mg/l	Tornabene, Brian J
42	Salinity	Sal		Tornabene, Brian J
43	pH	pH		Tornabene, Brian J
44	Nitrogen, total	TN	mg/l	Tornabene, Brian J
45	Carbon, organic, dissolved	DOC	mg/l	Tornabene, Brian J
46	Ammonium	[NH4]+	mg/l	Tornabene, Brian J
47	Number	No		Tornabene, Brian J	of sweeps
48	Area	Area	m²	Tornabene, Brian J	calculated via GIS
49	Amphibia	Amphibia	#	Tornabene, Brian J	per seine
50	Amphibia	Amphibia	#	Tornabene, Brian J	per sweep
51	Amphibia	Amphibia	#	Tornabene, Brian J	per sweep/seine
52	Amphibia	Amphibia	#	Tornabene, Brian J	total dissected
53	Larvae	Larvae	#	Tornabene, Brian J	amphibian larvae
54	Larvae	Larvae	#	Tornabene, Brian J	amphibian larvae without TAGR
55	Invertebrata	Invert	#	Tornabene, Brian J
56	Fish	Fish	#	Tornabene, Brian J
57	Vertebrata	Vertebrata	#	Tornabene, Brian J	fishes and amphibians
58	Total counts	Total counts	#	Tornabene, Brian J	all
59	Total counts	Total counts	#	Tornabene, Brian J	native
60	Ambystoma californiense	A. californiense	#	Tornabene, Brian J	adult
61	Ambystoma californiense	A. californiense	#	Tornabene, Brian J	larvae
62	Presence/absence	Presence/absence		Tornabene, Brian J	Ambystoma californiense
63	Bufo boreas	B. boreas	#	Tornabene, Brian J	adults
64	Bufo boreas	B. boreas	#	Tornabene, Brian J	larvae
65	Presence/absence	Presence/absence		Tornabene, Brian J	Bufo boreas
66	Pseudacris regilla	P. regilla	#	Tornabene, Brian J	adults
67	Pseudacris regilla	P. regilla	#	Tornabene, Brian J	larvae
68	Presence/absence	Presence/absence		Tornabene, Brian J	Pseudacris regilla
69	Rana catesbeiana	R. catesbeiana	#	Tornabene, Brian J	adults
70	Rana catesbeiana	R. catesbeiana	#	Tornabene, Brian J	larvae
71	Presence/absence	Presence/absence		Tornabene, Brian J	Rana catesbeiana
72	Rana draytonii	R. draytonii	#	Tornabene, Brian J	adults
73	Rana draytonii	R. draytonii	#	Tornabene, Brian J	larvae
74	Presence/absence	Presence/absence		Tornabene, Brian J	Rana draytonii
75	Taricha granulosa	T. granulosa	#	Tornabene, Brian J	adults
76	Taricha granulosa	T. granulosa	#	Tornabene, Brian J	larvae
77	Presence/absence	Presence/absence		Tornabene, Brian J	Taricha granulosa
78	Taricha torosa	T. torosa	#	Tornabene, Brian J	adults
79	Taricha torosa	T. torosa	#	Tornabene, Brian J	larvae
80	Presence/absence	Presence/absence		Tornabene, Brian J	Taricha torosa
81	Number of species	Spec No	#	Tornabene, Brian J	of amphibia
82	Rana draytonii	R. draytonii	#	Tornabene, Brian J	tested for Ranavirus
83	Rana draytonii	R. draytonii	#	Tornabene, Brian J	infected with Ranavirus
84	Number	No		Tornabene, Brian J	average viral load of Rana draytonii
85	Ambystoma californiense	A. californiense	#	Tornabene, Brian J	tested for Ranavirus
86	Number	No		Tornabene, Brian J	average viral load of Ambystoma californiense
87	Bufo boreas	B. boreas	#	Tornabene, Brian J	tested for Ranavirus
88	Bufo boreas	B. boreas	#	Tornabene, Brian J	infected with Ranavirus
89	Number	No		Tornabene, Brian J	average viral load of Bufo boreas
90	Pseudacris regilla	P. regilla	#	Tornabene, Brian J	tested for Ranavirus
91	Pseudacris regilla	P. regilla	#	Tornabene, Brian J	infected with Ranavirus
92	Number	No		Tornabene, Brian J	average viral load of Pseudacris regilla
93	Rana catesbeiana	R. catesbeiana	#	Tornabene, Brian J	tested for Ranavirus
94	Rana catesbeiana	R. catesbeiana	#	Tornabene, Brian J	infected with Ranavirus
95	Number	No		Tornabene, Brian J	average viral load of Rana catesbeiana
96	Taricha granulosa	T. granulosa	#	Tornabene, Brian J	tested for Ranavirus
97	Taricha granulosa	T. granulosa	#	Tornabene, Brian J	infected with Ranavirus
98	Number	No		Tornabene, Brian J	average viral load of Taricha granulosa
99	Taricha torosa	T. torosa	#	Tornabene, Brian J	tested for Ranavirus
100	Taricha torosa	T. torosa	#	Tornabene, Brian J	infected with Ranavirus
101	Number	No		Tornabene, Brian J	average viral load of Taricha torosa

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Size:

6682 data points

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