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Lischka, Silke; Schulz, Kai Georg; Bach, Lennart Thomas (2017): Seawater carbonate chemistry and ciliate community data of KOSMOS Finland 2012 mesocosm study [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.876121

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Keyword(s):
Baltic Sea; Biomass/Abundance/Elemental composition; Coast and continental shelf; Community composition and diversity; Entire community; Field experiment; Mesocosm or benthocosm; Pelagos; Temperate
Related to:
Lischka, Silke; Bach, Lennart Thomas; Schulz, Kai Georg; Riebesell, Ulf (2017): Ciliate and mesozooplankton community response to increasing CO2 levels in the Baltic Sea: insights from a large-scale mesocosm experiment. Biogeosciences, 14(2), 447-466, https://doi.org/10.5194/bg-14-447-2017
Original version:
Lischka, Silke; Schulz, Kai Georg; Bach, Lennart Thomas (2017): KOSMOS Finland 2012 mesocosm study: ciliate community. PANGAEA, https://doi.org/10.1594/PANGAEA.871117
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Coverage:
Latitude: 59.858330 * Longitude: 23.258330
Date/Time Start: 2012-06-12T00:00:00 * Date/Time End: 2012-06-12T00:00:00
Event(s):
KOSMOS_2012_Tvaerminne * Latitude: 59.858330 * Longitude: 23.258330 * Date/Time: 2012-06-12T00:00:00 * Method/Device: Mesocosm experiment (MESO)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-06-12.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Sample code/labelSample labelLischka, Silke
Mesocosm labelMeso labelLischka, Silke
Day of experimentDOEdayLischka, Silke
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmSchulz, Kai Georgexperiment mean
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmSchulz, Kai Georgdaily
Temperature, waterTemp°CSchulz, Kai Georg
SalinitySalSchulz, Kai Georg
Chlorophyll aChl aµg/lBach, Lennart Thomas
CiliatesCiliates#/lLischka, SilkeBalanion comatum
10 CiliatesCiliates#/lLischka, SilkeStrombidium sp. small
11 CiliatesCiliates#/lLischka, SilkeMesodinium sp.
12 CiliatesCiliates#/lLischka, SilkeMyrionecta rubra 0-10 µm
13 CiliatesCiliates#/lLischka, SilkeMyrionecta rubra 0-10 µm * 1000
14 CiliatesCiliates#/lLischka, SilkeMyrionecta rubra 11-20 µm
15 CiliatesCiliates#/lLischka, SilkeMyrionecta rubra 11-20 µm * 1000
16 CiliatesCiliates#/lLischka, SilkeMyrionecta rubra > 20 µm
17 CiliatesCiliates#/lLischka, SilkeMyrionecta rubra >20 µm * 1000
18 CiliatesCiliates#/lLischka, SilkeMyrionecta rubra Total
19 CiliatesCiliates#/lLischka, SilkeRimostrombidium sp.
20 CiliatesCiliates#/lLischka, SilkeSpathidium sp.
21 CiliatesCiliates#/lLischka, SilkeStrobilidium sp. small
22 CiliatesCiliates#/lLischka, SilkeStrobilidium sp. large
23 CiliatesCiliates#/lLischka, SilkeStrombidium sp.
24 CiliatesCiliates#/lLischka, SilkeTintinnids sp.
25 CiliatesCiliates#/lLischka, SilkeStrobilidium sp. Cyste
26 CiliatesCiliates#/lLischka, SilkeCyste sp.
27 CiliatesCiliates#/lLischka, SilkeCiliate sp.
28 CiliatesCiliates#/lLischka, SilkeEuplotes sp.
29 CiliatesCiliates#/lLischka, SilkeLacrymaria sp.
30 CiliatesCiliates#/lLischka, SilkeStrobilidium sp.
31 CiliatesCiliates#/lLischka, SilkeTotal cells
32 CiliatesCiliates#/lLischka, SilkeTotal Cells * 1000
33 CiliatesCiliates#/lLischka, SilkeCysts Total
34 CiliatesCiliates#/lLischka, SilkeCiliate sp. Total
35 Shannon Diversity IndexH'Lischka, Silke
36 Carbon, inorganic, dissolvedDICµmol/kgSchulz, Kai Georg
37 pHpHSchulz, Kai Georgtotal scale
38 Aragonite saturation stateOmega ArgSchulz, Kai Georg
39 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45 Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
6460 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Sample label

Meso label

DOE [day]

fCO2water_SST_wet [µatm]
(experiment mean)

fCO2water_SST_wet [µatm]
(daily)

Temp [°C]

Sal

Chl a [µg/l]

Ciliates [#/l]
(Balanion comatum)
10 
Ciliates [#/l]
(Strombidium sp. small)
11 
Ciliates [#/l]
(Mesodinium sp.)
12 
Ciliates [#/l]
(Myrionecta rubra 0-10 µm)
13 
Ciliates [#/l]
(Myrionecta rubra 0-10 µm * 1000)
14 
Ciliates [#/l]
(Myrionecta rubra 11-20 µm)
15 
Ciliates [#/l]
(Myrionecta rubra 11-20 µm * 1000)
16 
Ciliates [#/l]
(Myrionecta rubra > 20 µm)
17 
Ciliates [#/l]
(Myrionecta rubra >20 µm * 1000)
18 
Ciliates [#/l]
(Myrionecta rubra Total)
19 
Ciliates [#/l]
(Rimostrombidium sp.)
20 
Ciliates [#/l]
(Spathidium sp.)
21 
Ciliates [#/l]
(Strobilidium sp. small)
22 
Ciliates [#/l]
(Strobilidium sp. large)
23 
Ciliates [#/l]
(Strombidium sp.)
24 
Ciliates [#/l]
(Tintinnids sp.)
25 
Ciliates [#/l]
(Strobilidium sp. Cyste)
26 
Ciliates [#/l]
(Cyste sp.)
27 
Ciliates [#/l]
(Ciliate sp.)
28 
Ciliates [#/l]
(Euplotes sp.)
29 
Ciliates [#/l]
(Lacrymaria sp.)
30 
Ciliates [#/l]
(Strobilidium sp.)
31 
Ciliates [#/l]
(Total cells)
32 
Ciliates [#/l]
(Total Cells * 1000)
33 
Ciliates [#/l]
(Cysts Total)
34 
Ciliates [#/l]
(Ciliate sp. Total)
35 
H'
36 
DIC [µmol/kg]
37 
pH
(total scale)
38 
Omega Arg
39 
CSC flag
40 
CO2 [µmol/kg]
41 
fCO2water_SST_wet [µatm]
42 
pCO2water_SST_wet [µatm]
43 
[HCO3]- [µmol/kg]
44 
[CO3]2- [µmol/kg]
45 
AT [µmol/kg]
46 
Omega Arg
47 
Omega Cal
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