Ardyna, Mathieu; d'Ovidio, Francesco; Speich, Sabrina; Leconte, Jade; Chaffron, Samuel; Audic, Stephane; Garczarek, Laurence; Pesant, Stephane; Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2017): Environmental context of all samples from the Tara Oceans Expedition (2009-2013), about mesoscale features at the sampling location. PANGAEA, https://doi.org/10.1594/PANGAEA.875577, In: Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2017): Registry of all samples from the Tara Oceans Expedition (2009-2013). PANGAEA, https://doi.org/10.1594/PANGAEA.875582
Always quote citation above when using data! You can download the citation in several formats below.
Related to:
Pesant, Stephane; Not, Fabrice; Picheral, Marc; Kandels-Lewis, Stefanie; Le Bescot, Noan; Gorsky, G; Iudicone, Daniele; Karsenti, Eric; Speich, Sabrina; Troublé, Romain; Dimier, Céline; Searson, Sarah; Acinas, Silvia G; Bork, Peer; Boss, Emmanuel; Bowler, Chris; De Vargas, Colomban; Follows, Michael J; Grimsley, Nigel; Hingamp, Pascal; Jaillon, Olivier; Karp-Boss, Lee; Krzic, Uros; Ogata, Hiroyuki; Raes, Jeroen; Reynaud G., Emmanuel; Sardet, Christian; Sieracki, Michael E; Stemmann, Lars; Sullivan, Matthew B; Sunagawa, Shinichi; Velayoudon, Didier; Weissenbach, Jean; Wincker, Patrick (2015): Open science resources for the discovery and analysis of Tara Oceans data. Scientific Data, 2, 150023, https://doi.org/10.1038/sdata.2015.23
Pesant, Stephane; Tara Oceans Consortium, Coordinators; et al. (in prep.): Methodological and environmental context of Tara Oceans samples. Scientific Data
Speich, Sabrina; et al. (in prep.): Tara Oceans Data: Atmospheric and oceanographic context at the mesoscale, from remote sensing, arrays of Argo drifters and an onboard meteorological station.
Further details:
Behrenfeld, Michael J; Westberry, Toby K; Franz, B A; Feldman, Gene Carl; Doney, Scott C; Moore, Jefferson Keith; Dall'Olmo, Giorgio; Milligan, Allen J; Lima, Ivan D (2009): Satellite-detected fluorescence reveals global physiology of ocean phytoplankton. Biogeosciences, 6(5), 779-794, https://doi.org/10.5194/bg-6-779-2009
d'Ovidio, Francesco; De Monte, Silvia; Alvain, S; Dandonneau, Yves; Levy, M (2010): Fluid dynamical niches of phytoplankton types. Proceedings of the National Academy of Sciences, 107(43), 18366-18370, https://doi.org/10.1073/pnas.1004620107
International Hydrographic Organization, IHO (1953): Limits of Oceans and Seas. International Hydrographic Organization, Special Publication No 23, 3rd Edition, IMP, Monégasque - Monte-Carlo, 45 pp, hdl:10013/epic.37175.d001
Longhurst, Alan R (2007): Ecological Geography of the Sea (Second Edition). Academic Press, Burlington, MA, 560 pp., https://shop.elsevier.com/books/ecological-geography-of-the-sea/longhurst/978-0-12-455521-1
Project(s):
Fondation Tara Expeditions (FondTara)
Tara Oceans Expedition (Tara_Oceans_2009-2013)
Coverage:
Median Latitude: 13.998831 * Median Longitude: -38.196532 * South-bound Latitude: -64.382200 * West-bound Longitude: -168.903100 * North-bound Latitude: 79.677700 * East-bound Longitude: 174.991700
Date/Time Start: 2009-09-05T00:00:00 * Date/Time End: 2013-12-06T09:30:00
Event(s):
TARA_2009-2013_EVENT_unknown * Date/Time Start: 2009-09-05T00:00:00 * Date/Time End: 2013-12-06T00:00:00 * Comment: This event is used to describe a few samples for which the sampling event is unknown
TARA_20090907T1530Z_001_EVENT_NET ([day] [water layer with no specific feature]) * Latitude: 44.401300 * Longitude: -9.827300 * Date/Time: 2009-09-07T15:30:00 * Campaign: TARA_20090905Z (Lorient to Lisbon, Stations: TARA_001-002) * Basis: SV Tara * Method/Device: Plankton net, type=Bongo, mesh(µm)=300, mouth(m^2)=0.258319, length(m)=3 ([NET-BONGO-300])
TARA_20090907T1610Z_001_EVENT_NET ([day] [surface water layer (ENVO:00002042)]) * Latitude: 44.401300 * Longitude: -9.827300 * Date/Time: 2009-09-07T16:10:00 * Campaign: TARA_20090905Z (Lorient to Lisbon, Stations: TARA_001-002) * Basis: SV Tara * Method/Device: Plankton net+sieve, type=Double, mesh(µm)=20, mouth(m^2)=0.192442, length(m)=2.5 ([NET-DOUBLE-20]+[SIEVE-180])
Parameter(s):
# | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
---|---|---|---|---|---|---|
1 | Sample ID | Sample ID | Pesant, Stephane | registered at PANGAEA, Data Publisher for Earth and Environmental Science | TARA_barcode# | |
2 | Sample ID | Sample ID | Pesant, Stephane | registered at the BioSamples database | BioSamples accession number (SAMEA#) | |
3 | Sample ID | Sample ID | Pesant, Stephane | registered at the European Nucleotides Archive (ENA) | ENA sample accession number (ERS#) | |
4 | Basis of event | Basis | Pesant, Stephane | |||
5 | Campaign of event | Campaign | Pesant, Stephane | |||
6 | Station label | Station | Pesant, Stephane | registered at PANGAEA, Data Publisher for Earth and Environmental Science | TARA_station# | |
7 | Method/Device of event | Method/Device | Pesant, Stephane | |||
8 | Event label | Event | Pesant, Stephane | |||
9 | Date/Time of event | Date/Time | Pesant, Stephane | |||
10 | Latitude of event | Latitude | Pesant, Stephane | |||
11 | Longitude of event | Longitude | Pesant, Stephane | |||
12 | Environmental feature | Env feature | Pesant, Stephane | terms registered at EnvO, the Environmental Ontology | [abbreviation], full name (ENVO:ID) from which this sample was collected | |
13 | Depth, nominal | Depth nominal | Pesant, Stephane | from which this sample was collected | ||
14 | Depth, top/min | Depth top | m | Pesant, Stephane | from which this sample was collected | |
15 | Depth, bottom/max | Depth bot | m | Pesant, Stephane | from which this sample was collected | |
16 | Size fraction, lower threshold | Fraction lower | µm | Pesant, Stephane | described in Pesant et al. (2017) | used on board to prepare samples |
17 | Size fraction, upper threshold | Fraction upper | µm | Pesant, Stephane | described in Pesant et al. (2017) | used on board to prepare samples |
18 | Sample material | Samp mat | Pesant, Stephane | TARA_station#_environmental-feature_size-fraction | ||
19 | Sample method | Sample method | Pesant, Stephane | described in Pesant et al. (2017) | short label describing the target analysis (BGC=biogeochemistry, IMG=imaging, SEQ=sequencing) and specifics of the methodology and sampling device (N=net, W=pump/bottles/bucket, CW=concentrated by tangential filtration) | |
20 | Sample code/label | Sample label | Pesant, Stephane | TARA_event-datetime_station#_event-type_environmental-feature_(depth)_protocol-label_size-fraction_sample-barcode | ||
21 | Marine biome | MP biome | Pesant, Stephane | Longhurst (2007) | ||
22 | Ocean and sea region | OS region | Pesant, Stephane | IHO General Sea Areas (1953) registered at www.marineregions.org | [abbreviation] full name (MRGID:ID) | |
23 | Biogeographical province | BG province | Pesant, Stephane | Longhurst (2007) registered at marineregions.org | [abbreviation] full name (MRGID:ID) | |
24 | Sea ice concentration | Sea ice conc | % | Ardyna, Mathieu | Calculated from NISDC satellite products | at the sampling location and date |
25 | Sea ice free period, start, day of the year | Sea ice free period start DOY | day | Ardyna, Mathieu | Calculated from Takuvik satellite products | at the sampling location, sea ice free period is when sea ice cover <10% |
26 | Sea Ice free period, duration | Sea Ice free period | days | Ardyna, Mathieu | Calculated from Takuvik satellite products | at the sampling location, sea ice free period is when sea ice cover <10% |
27 | Sea ice free period, end, day of the year | Sea ice free period end DOY | day | Ardyna, Mathieu | Calculated from Takuvik satellite products | at the sampling location, sea ice free period is when sea ice cover <10% |
28 | Season | Season | Speich, Sabrina | at the sampling location and date | ||
29 | Season | Season | Speich, Sabrina | at the sampling location and date [early, middle or late] | ||
30 | Moon phase, nominal | Moon phase nominal | Audic, Stephane | Calculated from Astronomical Applicationsof the U.S. Naval Observatory | at the sampling location and date | |
31 | Moon phase, proportion | Moon phase proportion | Audic, Stephane | Calculated from Astronomical Applicationsof the U.S. Naval Observatory | at the sampling location and date | |
32 | Time of day | Time of day | Pesant, Stephane | reported on logsheets or by data curators | at the sampling location, date and time | |
33 | Sunshine duration | SSD | min | Audic, Stephane | Calculated from Astronomical Applicationsof the U.S. Naval Observatory | at the sampling location and date |
34 | Radiation, photosynthetically active per day | PAR | mol quanta/m2/day | Chaffron, Samuel | calculated from AMODIS products | at the sampling location and date |
35 | Radiation, photosynthetically active per day | PAR | mol quanta/m2/day | Chaffron, Samuel | calculated from AMODIS products | at the sampling location for a period of 8 days around the sampling date |
36 | Radiation, photosynthetically active per day | PAR | mol quanta/m2/day | Ardyna, Mathieu | Calculated from GlobColour products (GSM algorithm) | at the sampling location for a period of 8 days around the sampling date |
37 | Radiation, photosynthetically active per day | PAR | mol quanta/m2/day | Chaffron, Samuel | calculated from AMODIS products | at the sampling location for a period of 30 days around the sampling date |
38 | Sea surface temperature gradient, horizontal | SST grad h | °C/100 km | Ardyna, Mathieu | calculated from AMODIS products | at the sampling location for a period of 8 days around the sampling date |
39 | Iron, total | Fe tot | µmol/l | Leconte, Jade | Calculated using the Darwin model | mean value at a depth of 5 m at the sampling location and date |
40 | Iron, standard deviation | Fe std dev | ± | Leconte, Jade | Calculated using the Darwin model | standard deviation value at a depth of 5 m at the sampling location and date |
41 | Ammonium | [NH4]+ | µmol/l | Leconte, Jade | Calculated using the Darwin model | mean value at a depth of 5 m at the sampling location and date |
42 | Ammonium, standard deviation | [NH4]+ std dev | ± | Leconte, Jade | Calculated using the Darwin model | standard deviation value at a depth of 5 m at the sampling location and date |
43 | Nitrite | [NO2]- | µmol/l | Leconte, Jade | Calculated using the Darwin model | mean value at a depth of 5 m at the sampling location and date |
44 | Nitrite, standard deviation | [NO2]- std dev | ± | Leconte, Jade | Calculated using the Darwin model | standard deviation value at a depth of 5 m at the sampling location and date |
45 | Nitrate | [NO3]- | µmol/l | Leconte, Jade | Calculated using the Darwin model | mean value at a depth of 5 m at the sampling location and date |
46 | Nitrate, standard deviation | NO3 std dev | ± | Leconte, Jade | Calculated using the Darwin model | standard deviation value at a depth of 5 m at the sampling location and date |
47 | Sea surface fluorescence, colored dissolved organic matter | SSfCDOM | ppb (QSE) | Chaffron, Samuel | calculated from AMODIS products | at the sampling location and date, expressed in ppb QSE (i.e. fluorescence emitted by 1 ppb of quinine sulfate diluted in 0.05 M sulfuric acid) |
48 | Sea surface chlorophyll a | SSChla | mg/m3 | Ardyna, Mathieu | Calculated from GlobColour products (GSM algorithm) | at the sampling location for a period of 8 days around the sampling date |
49 | Chlorophyll a, areal concentration | Chl a conc | mg/m2 | Speich, Sabrina | Calculated by vertical integration of fluorescence profiles 0-200 m or bottom | at the sampling location and date |
50 | Sea surface quantum yield of fluorescence | Ssphi sat | % | Garczarek, Laurence | calculated from AMODIS products | at the sampling location for a period of 30 days around the sampling date, using satellite-based estimates of surface fluorescence and photosynthetically active radiation (Behrenfeld et al. 2009), and corr. for Non-Photochemical Quenching (NPQ) |
51 | Net primary production of carbon | NPP C | mg/m2/day | Ardyna, Mathieu | Calculated using the Arctic-adapted UQAR-TAKUVIK model | at the sampling location and date |
52 | Net primary production of carbon | NPP C | mg/m2/day | Chaffron, Samuel | calculated from VGPM products | at the sampling location for a period of 30 days around the sampling date |
53 | Suspended matter, total | TSS | mg/l | Ardyna, Mathieu | Calculated from GlobColour products (MERIS C2R Neural Network algorithm) | at the sampling location for a period of 8 days around the sampling date |
54 | Particulate organic carbon | POC | µg/kg | Ardyna, Mathieu | Calculated from GlobColour products (GSM algorithm) | at the sampling location for a period of 8 days around the sampling date |
55 | Carbon, inorganic, particulate | PIC | mol/m3 | Ardyna, Mathieu | Calculated from GlobColour products (GSM algorithm) | at the sampling location for a period of 8 days around the sampling date |
56 | Depth, bathymetric | Bathy depth | m | Speich, Sabrina | at the sampling location and date | |
57 | LATITUDE | Latitude | Speich, Sabrina | Geocode – of the closest geographic coordinate on a coast | ||
58 | LONGITUDE | Longitude | Speich, Sabrina | Geocode – of the closest geographic coordinate on a coast | ||
59 | Distance | Distance | km | Speich, Sabrina | from the closest geographic coordinate on a coast | |
60 | Sea surface temperature gradient, horizontal | SST grad h | °C/100 km | Speich, Sabrina | at the sampling location and date | |
61 | Strain sub-mesoscale index | SSM index | 1/s2 | Speich, Sabrina | at the sampling location and date | |
62 | Geostrophic velocity, longitudinal | u | cm/s | d'Ovidio, Francesco | Calculated (d'Ovidio et al. 2010) | at the sampling location and date |
63 | Geostrophic velocity, latitudinal | v | cm/s | d'Ovidio, Francesco | Calculated (d'Ovidio et al. 2010) | at the sampling location and date |
64 | Okubo-Weiss parameter | OW | d'Ovidio, Francesco | Calculated (d'Ovidio et al. 2010) | at the sampling location and date [Values<0 indicate inside an eddy; Values>0 indicate outside an eddy] | |
65 | Maximum Lyapunov exponent | MLE | 1/day | d'Ovidio, Francesco | Calculated (d'Ovidio et al. 2010) | at the sampling location and date [Values>0.1 indicate the presence of a transport front] |
66 | Residence time | RT | days | d'Ovidio, Francesco | Calculated (d'Ovidio et al. 2010) | of the water mass at the sampling location and date [Values>30 indicate old water mass; Values<30 indicate young water mass] |
67 | LATITUDE | Latitude | d'Ovidio, Francesco | Calculated (d'Ovidio et al. 2010) | Geocode – of the continental shelf with a bathymetry <500 m where the sampled water mass originated, based on a back-calculated geostrophic current trajectory | |
68 | LONGITUDE | Longitude | d'Ovidio, Francesco | Calculated (d'Ovidio et al. 2010) | Geocode – of the continental shelf with a bathymetry <500 m where the sampled water mass originated, based on a back-calculated geostrophic current trajectory | |
69 | Age | Age | days | d'Ovidio, Francesco | Calculated (d'Ovidio et al. 2010) | number of days since the sampled water mass has left a continental shelf with a bathymetry >500 m, based on a back-calculated geostrophic current trajectory |
70 | LATITUDE | Latitude | d'Ovidio, Francesco | Calculated (d'Ovidio et al. 2010) | Geocode – of the geographic coordinate where the sampled water mass originated 45 days before the sampling date, based on a back-calculated geostrophic current trajectory | |
71 | LONGITUDE | Longitude | d'Ovidio, Francesco | Calculated (d'Ovidio et al. 2010) | Geocode – of the geographic coordinate where the sampled water mass originated 45 days before the sampling date, based on a back-calculated geostrophic current trajectory |
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