Not logged in
PANGAEA.
Data Publisher for Earth & Environmental Science

Ardyna, Mathieu; d'Ovidio, Francesco; Speich, Sabrina; Leconte, Jade; Chaffron, Samuel; Audic, Stephane; Garczarek, Laurence; Pesant, Stephane; Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2017): Environmental context of all samples from the Tara Oceans Expedition (2009-2013), about mesoscale features at the sampling location. PANGAEA, https://doi.org/10.1594/PANGAEA.875577, In: Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2017): Registry of all samples from the Tara Oceans Expedition (2009-2013). PANGAEA, https://doi.org/10.1594/PANGAEA.875582

Always quote citation above when using data! You can download the citation in several formats below.

RIS CitationBibTeX Citation

Related to:
Pesant, Stephane; Tara Oceans Consortium, Coordinators; et al. (in prep.): Methodological and environmental context of Tara Oceans samples. Scientific Data
Speich, Sabrina; et al. (in prep.): Tara Oceans Data: Atmospheric and oceanographic context at the mesoscale, from remote sensing, arrays of Argo drifters and an onboard meteorological station.
Further details:
Behrenfeld, Michael J; Westberry, Toby K; Franz, B A; Feldman, Gene Carl; Doney, Scott C; Moore, Jefferson Keith; Dall'Olmo, Giorgio; Milligan, Allen J; Lima, Ivan D (2009): Satellite-detected fluorescence reveals global physiology of ocean phytoplankton. Biogeosciences, 6(5), 779-794, https://doi.org/10.5194/bg-6-779-2009
d'Ovidio, Francesco; De Monte, Silvia; Alvain, S; Dandonneau, Yves; Levy, M (2010): Fluid dynamical niches of phytoplankton types. Proceedings of the National Academy of Sciences, 107(43), 18366-18370, https://doi.org/10.1073/pnas.1004620107
International Hydrographic Organization, IHO (1953): Limits of Oceans and Seas. International Hydrographic Organization, Special Publication No 23, 3rd Edition, IMP, Monégasque - Monte-Carlo, 45 pp, hdl:10013/epic.37175.d001
Longhurst, Alan R (2007): Ecological Geography of the Sea (Second Edition). Academic Press, Burlington, MA, 560 pp., https://shop.elsevier.com/books/ecological-geography-of-the-sea/longhurst/978-0-12-455521-1
Coverage:
Median Latitude: 13.998831 * Median Longitude: -38.196532 * South-bound Latitude: -64.382200 * West-bound Longitude: -168.903100 * North-bound Latitude: 79.677700 * East-bound Longitude: 174.991700
Date/Time Start: 2009-09-05T00:00:00 * Date/Time End: 2013-12-06T09:30:00
Event(s):
TARA_2009-2013_EVENT_unknown * Date/Time Start: 2009-09-05T00:00:00 * Date/Time End: 2013-12-06T00:00:00 * Comment: This event is used to describe a few samples for which the sampling event is unknown
TARA_20090907T1530Z_001_EVENT_NET ([day] [water layer with no specific feature]) * Latitude: 44.401300 * Longitude: -9.827300 * Date/Time: 2009-09-07T15:30:00 * Campaign: TARA_20090905Z (Lorient to Lisbon, Stations: TARA_001-002) * Basis: SV Tara * Method/Device: Plankton net, type=Bongo, mesh(µm)=300, mouth(m^2)=0.258319, length(m)=3 ([NET-BONGO-300])
TARA_20090907T1610Z_001_EVENT_NET ([day] [surface water layer (ENVO:00002042)]) * Latitude: 44.401300 * Longitude: -9.827300 * Date/Time: 2009-09-07T16:10:00 * Campaign: TARA_20090905Z (Lorient to Lisbon, Stations: TARA_001-002) * Basis: SV Tara * Method/Device: Plankton net+sieve, type=Double, mesh(µm)=20, mouth(m^2)=0.192442, length(m)=2.5 ([NET-DOUBLE-20]+[SIEVE-180])
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Sample IDSample IDPesant, Stephaneregistered at PANGAEA, Data Publisher for Earth and Environmental ScienceTARA_barcode#
2Sample IDSample IDPesant, Stephaneregistered at the BioSamples databaseBioSamples accession number (SAMEA#)
3Sample IDSample IDPesant, Stephaneregistered at the European Nucleotides Archive (ENA)ENA sample accession number (ERS#)
4Basis of eventBasisPesant, Stephane
5Campaign of eventCampaignPesant, Stephane
6Station labelStationPesant, Stephaneregistered at PANGAEA, Data Publisher for Earth and Environmental ScienceTARA_station#
7Method/Device of eventMethod/DevicePesant, Stephane
8Event labelEventPesant, Stephane
9Date/Time of eventDate/TimePesant, Stephane
10Latitude of eventLatitudePesant, Stephane
11Longitude of eventLongitudePesant, Stephane
12Environmental featureEnv featurePesant, Stephaneterms registered at EnvO, the Environmental Ontology[abbreviation], full name (ENVO:ID) from which this sample was collected
13Depth, nominalDepth nominalPesant, Stephanefrom which this sample was collected
14Depth, top/minDepth topmPesant, Stephanefrom which this sample was collected
15Depth, bottom/maxDepth botmPesant, Stephanefrom which this sample was collected
16Size fraction, lower thresholdFraction lowerµmPesant, Stephanedescribed in Pesant et al. (2017)used on board to prepare samples
17Size fraction, upper thresholdFraction upperµmPesant, Stephanedescribed in Pesant et al. (2017)used on board to prepare samples
18Sample materialSamp matPesant, StephaneTARA_station#_environmental-feature_size-fraction
19Sample methodSample methodPesant, Stephanedescribed in Pesant et al. (2017)short label describing the target analysis (BGC=biogeochemistry, IMG=imaging, SEQ=sequencing) and specifics of the methodology and sampling device (N=net, W=pump/bottles/bucket, CW=concentrated by tangential filtration)
20Sample code/labelSample labelPesant, StephaneTARA_event-datetime_station#_event-type_environmental-feature_(depth)_protocol-label_size-fraction_sample-barcode
21Marine biomeMP biomePesant, StephaneLonghurst (2007)
22Ocean and sea regionOS regionPesant, StephaneIHO General Sea Areas (1953) registered at www.marineregions.org[abbreviation] full name (MRGID:ID)
23Biogeographical provinceBG provincePesant, StephaneLonghurst (2007) registered at marineregions.org[abbreviation] full name (MRGID:ID)
24Sea ice concentrationSea ice conc%Ardyna, MathieuCalculated from NISDC satellite productsat the sampling location and date
25Sea ice free period, start, day of the yearSea ice free period start DOYdayArdyna, MathieuCalculated from Takuvik satellite productsat the sampling location, sea ice free period is when sea ice cover <10%
26Sea Ice free period, durationSea Ice free perioddaysArdyna, MathieuCalculated from Takuvik satellite productsat the sampling location, sea ice free period is when sea ice cover <10%
27Sea ice free period, end, day of the yearSea ice free period end DOYdayArdyna, MathieuCalculated from Takuvik satellite productsat the sampling location, sea ice free period is when sea ice cover <10%
28SeasonSeasonSpeich, Sabrinaat the sampling location and date
29SeasonSeasonSpeich, Sabrinaat the sampling location and date [early, middle or late]
30Moon phase, nominalMoon phase nominalAudic, StephaneCalculated from Astronomical Applicationsof the U.S. Naval Observatoryat the sampling location and date
31Moon phase, proportionMoon phase proportionAudic, StephaneCalculated from Astronomical Applicationsof the U.S. Naval Observatoryat the sampling location and date
32Time of dayTime of dayPesant, Stephanereported on logsheets or by data curatorsat the sampling location, date and time
33Sunshine durationSSDminAudic, StephaneCalculated from Astronomical Applicationsof the U.S. Naval Observatoryat the sampling location and date
34Radiation, photosynthetically active per dayPARmol quanta/m2/dayChaffron, Samuelcalculated from AMODIS productsat the sampling location and date
35Radiation, photosynthetically active per dayPARmol quanta/m2/dayChaffron, Samuelcalculated from AMODIS productsat the sampling location for a period of 8 days around the sampling date
36Radiation, photosynthetically active per dayPARmol quanta/m2/dayArdyna, MathieuCalculated from GlobColour products (GSM algorithm)at the sampling location for a period of 8 days around the sampling date
37Radiation, photosynthetically active per dayPARmol quanta/m2/dayChaffron, Samuelcalculated from AMODIS productsat the sampling location for a period of 30 days around the sampling date
38Sea surface temperature gradient, horizontalSST grad h°C/100 kmArdyna, Mathieucalculated from AMODIS productsat the sampling location for a period of 8 days around the sampling date
39Iron, totalFe totµmol/lLeconte, JadeCalculated using the Darwin modelmean value at a depth of 5 m at the sampling location and date
40Iron, standard deviationFe std dev±Leconte, JadeCalculated using the Darwin modelstandard deviation value at a depth of 5 m at the sampling location and date
41Ammonium[NH4]+µmol/lLeconte, JadeCalculated using the Darwin modelmean value at a depth of 5 m at the sampling location and date
42Ammonium, standard deviation[NH4]+ std dev±Leconte, JadeCalculated using the Darwin modelstandard deviation value at a depth of 5 m at the sampling location and date
43Nitrite[NO2]-µmol/lLeconte, JadeCalculated using the Darwin modelmean value at a depth of 5 m at the sampling location and date
44Nitrite, standard deviation[NO2]- std dev±Leconte, JadeCalculated using the Darwin modelstandard deviation value at a depth of 5 m at the sampling location and date
45Nitrate[NO3]-µmol/lLeconte, JadeCalculated using the Darwin modelmean value at a depth of 5 m at the sampling location and date
46Nitrate, standard deviationNO3 std dev±Leconte, JadeCalculated using the Darwin modelstandard deviation value at a depth of 5 m at the sampling location and date
47Sea surface fluorescence, colored dissolved organic matterSSfCDOMppb (QSE)Chaffron, Samuelcalculated from AMODIS productsat the sampling location and date, expressed in ppb QSE (i.e. fluorescence emitted by 1 ppb of quinine sulfate diluted in 0.05 M sulfuric acid)
48Sea surface chlorophyll aSSChlamg/m3Ardyna, MathieuCalculated from GlobColour products (GSM algorithm)at the sampling location for a period of 8 days around the sampling date
49Chlorophyll a, areal concentrationChl a concmg/m2Speich, SabrinaCalculated by vertical integration of fluorescence profiles 0-200 m or bottomat the sampling location and date
50Sea surface quantum yield of fluorescenceSsphi sat%Garczarek, Laurencecalculated from AMODIS productsat the sampling location for a period of 30 days around the sampling date, using satellite-based estimates of surface fluorescence and photosynthetically active radiation (Behrenfeld et al. 2009), and corr. for Non-Photochemical Quenching (NPQ)
51Net primary production of carbonNPP Cmg/m2/dayArdyna, MathieuCalculated using the Arctic-adapted UQAR-TAKUVIK modelat the sampling location and date
52Net primary production of carbonNPP Cmg/m2/dayChaffron, Samuelcalculated from VGPM productsat the sampling location for a period of 30 days around the sampling date
53Suspended matter, totalTSSmg/lArdyna, MathieuCalculated from GlobColour products (MERIS C2R Neural Network algorithm)at the sampling location for a period of 8 days around the sampling date
54Particulate organic carbonPOCµg/kgArdyna, MathieuCalculated from GlobColour products (GSM algorithm)at the sampling location for a period of 8 days around the sampling date
55Carbon, inorganic, particulatePICmol/m3Ardyna, MathieuCalculated from GlobColour products (GSM algorithm)at the sampling location for a period of 8 days around the sampling date
56Depth, bathymetricBathy depthmSpeich, Sabrinaat the sampling location and date
57LATITUDELatitudeSpeich, SabrinaGeocode – of the closest geographic coordinate on a coast
58LONGITUDELongitudeSpeich, SabrinaGeocode – of the closest geographic coordinate on a coast
59DistanceDistancekmSpeich, Sabrinafrom the closest geographic coordinate on a coast
60Sea surface temperature gradient, horizontalSST grad h°C/100 kmSpeich, Sabrinaat the sampling location and date
61Strain sub-mesoscale indexSSM index1/s2Speich, Sabrinaat the sampling location and date
62Geostrophic velocity, longitudinalucm/sd'Ovidio, FrancescoCalculated (d'Ovidio et al. 2010)at the sampling location and date
63Geostrophic velocity, latitudinalvcm/sd'Ovidio, FrancescoCalculated (d'Ovidio et al. 2010)at the sampling location and date
64Okubo-Weiss parameterOWd'Ovidio, FrancescoCalculated (d'Ovidio et al. 2010)at the sampling location and date [Values<0 indicate inside an eddy; Values>0 indicate outside an eddy]
65Maximum Lyapunov exponentMLE1/dayd'Ovidio, FrancescoCalculated (d'Ovidio et al. 2010)at the sampling location and date [Values>0.1 indicate the presence of a transport front]
66Residence timeRTdaysd'Ovidio, FrancescoCalculated (d'Ovidio et al. 2010)of the water mass at the sampling location and date [Values>30 indicate old water mass; Values<30 indicate young water mass]
67LATITUDELatituded'Ovidio, FrancescoCalculated (d'Ovidio et al. 2010)Geocode – of the continental shelf with a bathymetry <500 m where the sampled water mass originated, based on a back-calculated geostrophic current trajectory
68LONGITUDELongituded'Ovidio, FrancescoCalculated (d'Ovidio et al. 2010)Geocode – of the continental shelf with a bathymetry <500 m where the sampled water mass originated, based on a back-calculated geostrophic current trajectory
69AgeAgedaysd'Ovidio, FrancescoCalculated (d'Ovidio et al. 2010)number of days since the sampled water mass has left a continental shelf with a bathymetry >500 m, based on a back-calculated geostrophic current trajectory
70LATITUDELatituded'Ovidio, FrancescoCalculated (d'Ovidio et al. 2010)Geocode – of the geographic coordinate where the sampled water mass originated 45 days before the sampling date, based on a back-calculated geostrophic current trajectory
71LONGITUDELongituded'Ovidio, FrancescoCalculated (d'Ovidio et al. 2010)Geocode – of the geographic coordinate where the sampled water mass originated 45 days before the sampling date, based on a back-calculated geostrophic current trajectory
Size:
1847508 data points

Download Data

Download dataset as tab-delimited text — use the following character encoding:

View dataset as HTML (shows only first 2000 rows)