Citation:

PANGAEA.875582

Name: Environmental context of all samples from the Tara Oceans Expedition (2009-2013), about mesoscale features at the sampling location
Published: 2017-05-20
License: https://creativecommons.org/licenses/by/3.0/

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Published: 2017-05-20 • DOI registered: 2017-11-28

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Related to:

Pesant, Stephane; Not, Fabrice; Picheral, Marc; Kandels-Lewis, Stefanie; Le Bescot, Noan; Gorsky, G; Iudicone, Daniele; Karsenti, Eric; Speich, Sabrina; Troublé, Romain; Dimier, Céline; Searson, Sarah; Acinas, Silvia G; Bork, Peer; Boss, Emmanuel; Bowler, Chris; De Vargas, Colomban; Follows, Michael J; Grimsley, Nigel; Hingamp, Pascal; Jaillon, Olivier; Karp-Boss, Lee; Krzic, Uros; Ogata, Hiroyuki; Raes, Jeroen; Reynaud G., Emmanuel; Sardet, Christian; Sieracki, Michael E; Stemmann, Lars; Sullivan, Matthew B; Sunagawa, Shinichi; Velayoudon, Didier; Weissenbach, Jean; Wincker, Patrick (2015): Open science resources for the discovery and analysis of Tara Oceans data. Scientific Data, 2, 150023, https://doi.org/10.1038/sdata.2015.23

Pesant, Stephane; Tara Oceans Consortium, Coordinators; et al. (in prep.): Methodological and environmental context of Tara Oceans samples. Scientific Data

Speich, Sabrina; et al. (in prep.): Tara Oceans Data: Atmospheric and oceanographic context at the mesoscale, from remote sensing, arrays of Argo drifters and an onboard meteorological station.

Further details:

Behrenfeld, Michael J; Westberry, Toby K; Franz, B A; Feldman, Gene Carl; Doney, Scott C; Moore, Jefferson Keith; Dall'Olmo, Giorgio; Milligan, Allen J; Lima, Ivan D (2009): Satellite-detected fluorescence reveals global physiology of ocean phytoplankton. Biogeosciences, 6(5), 779-794, https://doi.org/10.5194/bg-6-779-2009

d'Ovidio, Francesco; De Monte, Silvia; Alvain, S; Dandonneau, Yves; Levy, M (2010): Fluid dynamical niches of phytoplankton types. Proceedings of the National Academy of Sciences, 107(43), 18366-18370, https://doi.org/10.1073/pnas.1004620107

International Hydrographic Organization, IHO (1953): Limits of Oceans and Seas. International Hydrographic Organization, Special Publication No 23, 3rd Edition, IMP, Monégasque - Monte-Carlo, 45 pp, hdl:10013/epic.37175.d001

Longhurst, Alan R (2007): Ecological Geography of the Sea (Second Edition). Academic Press, Burlington, MA, 560 pp., https://shop.elsevier.com/books/ecological-geography-of-the-sea/longhurst/978-0-12-455521-1

Project(s):

Fondation Tara Expeditions (FondTara)

Tara Oceans Expedition (Tara_Oceans_2009-2013)

wOrld oCEAN biOressources, biotechnologies and Earth-systeM servICeS (OCEANOMICS)

Coverage:

Median Latitude: 13.998831 * Median Longitude: -38.196532 * South-bound Latitude: -64.382200 * West-bound Longitude: -168.903100 * North-bound Latitude: 79.677700 * East-bound Longitude: 174.991700

Date/Time Start: 2009-09-05T00:00:00 * Date/Time End: 2013-12-06T09:30:00

Event(s):

TARA_2009-2013_EVENT_unknown * Date/Time Start: 2009-09-05T00:00:00 * Date/Time End: 2013-12-06T00:00:00 * Comment: This event is used to describe a few samples for which the sampling event is unknown

TARA_20090907T1530Z_001_EVENT_NET ([day] [water layer with no specific feature]) * Latitude: 44.401300 * Longitude: -9.827300 * Date/Time: 2009-09-07T15:30:00 * Campaign: (Lorient to Lisbon, Stations: TARA_001-002) * Basis: SV Tara * Method/Device: Plankton net, type=Bongo, mesh(µm)=300, mouth(m^2)=0.258319, length(m)=3 ([NET-BONGO-300])

TARA_20090907T1610Z_001_EVENT_NET ([day] [surface water layer (ENVO:00002042)]) * Latitude: 44.401300 * Longitude: -9.827300 * Date/Time: 2009-09-07T16:10:00 * Campaign: (Lorient to Lisbon, Stations: TARA_001-002) * Basis: SV Tara * Method/Device: Plankton net+sieve, type=Double, mesh(µm)=20, mouth(m^2)=0.192442, length(m)=2.5 ([NET-DOUBLE-20]+[SIEVE-180])

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Sample ID	Sample ID		Pesant, Stephane	registered at PANGAEA, Data Publisher for Earth and Environmental Science	TARA_barcode#
2	Sample ID	Sample ID		Pesant, Stephane	registered at the BioSamples database	BioSamples accession number (SAMEA#)
3	Sample ID	Sample ID		Pesant, Stephane	registered at the European Nucleotides Archive (ENA)	ENA sample accession number (ERS#)
4	Basis of event	Basis		Pesant, Stephane
5	Campaign of event	Campaign		Pesant, Stephane
6	Station label	Station		Pesant, Stephane	registered at PANGAEA, Data Publisher for Earth and Environmental Science	TARA_station#
7	Method/Device of event	Method/Device		Pesant, Stephane
8	Event label	Event		Pesant, Stephane
9	Date/Time of event	Date/Time		Pesant, Stephane
10	Latitude of event	Latitude		Pesant, Stephane
11	Longitude of event	Longitude		Pesant, Stephane
12	Environmental feature	Env feature		Pesant, Stephane	Terms registered at EnvO, the Environmental Ontology	[abbreviation], full name (ENVO:ID) from which this sample was collected
13	Depth, nominal	Depth nominal		Pesant, Stephane		from which this sample was collected
14	Depth, top/min	Depth top	m	Pesant, Stephane		from which this sample was collected
15	Depth, bottom/max	Depth bot	m	Pesant, Stephane		from which this sample was collected
16	Size fraction, lower threshold	Fraction lower	µm	Pesant, Stephane	described in Pesant et al. (2017)	used on board to prepare samples
17	Size fraction, upper threshold	Fraction upper	µm	Pesant, Stephane	described in Pesant et al. (2017)	used on board to prepare samples
18	Sample material	Samp mat		Pesant, Stephane		TARA_station#_environmental-feature_size-fraction
19	Sample method	Sample method		Pesant, Stephane	described in Pesant et al. (2017)	short label describing the target analysis (BGC=biogeochemistry, IMG=imaging, SEQ=sequencing) and specifics of the methodology and sampling device (N=net, W=pump/bottles/bucket, CW=concentrated by tangential filtration)
20	Sample code/label	Sample label		Pesant, Stephane		TARA_event-datetime_station#_event-type_environmental-feature_(depth)_protocol-label_size-fraction_sample-barcode
21	Marine biome	MP biome		Pesant, Stephane	Longhurst (2007)
22	Ocean and sea region	OS region		Pesant, Stephane	IHO General Sea Areas (1953) registered at www.marineregions.org	[abbreviation] full name (MRGID:ID)
23	Biogeographical province	BG province		Pesant, Stephane	Longhurst (2007) registered at marineregions.org	[abbreviation] full name (MRGID:ID)
24	Sea ice concentration	Sea ice conc	%	Ardyna, Mathieu	Calculated from NISDC satellite products	at the sampling location and date
25	Sea ice free period, start, day of the year	Sea ice free period start DOY	day	Ardyna, Mathieu	Calculated from Takuvik satellite products	at the sampling location, sea ice free period is when sea ice cover <10%
26	Sea Ice free period, duration	Sea Ice free period	days	Ardyna, Mathieu	Calculated from Takuvik satellite products	at the sampling location, sea ice free period is when sea ice cover <10%
27	Sea ice free period, end, day of the year	Sea ice free period end DOY	day	Ardyna, Mathieu	Calculated from Takuvik satellite products	at the sampling location, sea ice free period is when sea ice cover <10%
28	Season	Season		Speich, Sabrina		at the sampling location and date
29	Season	Season		Speich, Sabrina		at the sampling location and date [early, middle or late]
30	Moon phase, nominal	Moon phase nominal		Audic, Stephane	Calculated from Astronomical Applicationsof the U.S. Naval Observatory	at the sampling location and date
31	Moon phase, proportion	Moon phase proportion		Audic, Stephane	Calculated from Astronomical Applicationsof the U.S. Naval Observatory	at the sampling location and date
32	Time of day	Time of day		Pesant, Stephane	reported on logsheets or by data curators	at the sampling location, date and time
33	Sunshine duration	SSD	min	Audic, Stephane	Calculated from Astronomical Applicationsof the U.S. Naval Observatory	at the sampling location and date
34	Radiation, photosynthetically active	PAR	mol quanta/m²/day	Chaffron, Samuel	calculated from AMODIS products	at the sampling location and date
35	Radiation, photosynthetically active	PAR	mol quanta/m²/day	Chaffron, Samuel	calculated from AMODIS products	at the sampling location for a period of 8 days around the sampling date
36	Radiation, photosynthetically active	PAR	mol quanta/m²/day	Ardyna, Mathieu	Calculated from GlobColour products (GSM algorithm)	at the sampling location for a period of 8 days around the sampling date
37	Radiation, photosynthetically active	PAR	mol quanta/m²/day	Chaffron, Samuel	calculated from AMODIS products	at the sampling location for a period of 30 days around the sampling date
38	Sea surface temperature gradient, horizontal	SST grad h	°C/100 km	Ardyna, Mathieu	calculated from AMODIS products	at the sampling location for a period of 8 days around the sampling date
39	Iron, total	Fe tot	µmol/l	Leconte, Jade	Calculated using the Darwin model	mean value at a depth of 5 m at the sampling location and date
40	Iron, standard deviation	Fe std dev	±	Leconte, Jade	Calculated using the Darwin model	standard deviation value at a depth of 5 m at the sampling location and date
41	Ammonium	[NH4]+	µmol/l	Leconte, Jade	Calculated using the Darwin model	mean value at a depth of 5 m at the sampling location and date
42	Ammonium, standard deviation	[NH4]+ std dev	±	Leconte, Jade	Calculated using the Darwin model	standard deviation value at a depth of 5 m at the sampling location and date
43	Nitrite	[NO2]-	µmol/l	Leconte, Jade	Calculated using the Darwin model	mean value at a depth of 5 m at the sampling location and date
44	Nitrite, standard deviation	[NO2]- std dev	±	Leconte, Jade	Calculated using the Darwin model	standard deviation value at a depth of 5 m at the sampling location and date
45	Nitrate	[NO3]-	µmol/l	Leconte, Jade	Calculated using the Darwin model	mean value at a depth of 5 m at the sampling location and date
46	Nitrate, standard deviation	NO3 std dev	±	Leconte, Jade	Calculated using the Darwin model	standard deviation value at a depth of 5 m at the sampling location and date
47	Sea surface fluorescence, colored dissolved organic matter	SSfCDOM	ppb (QSE)	Chaffron, Samuel	calculated from AMODIS products	at the sampling location and date, expressed in ppb QSE (i.e. fluorescence emitted by 1 ppb of quinine sulfate diluted in 0.05 M sulfuric acid)
48	Sea surface chlorophyll a	SSChla	mg/m³	Ardyna, Mathieu	Calculated from GlobColour products (GSM algorithm)	at the sampling location for a period of 8 days around the sampling date
49	Chlorophyll a, areal concentration	Chl a conc	mg/m²	Speich, Sabrina	Calculated by vertical integration of fluorescence profiles 0-200 m or bottom	at the sampling location and date
50	Sea surface quantum yield of fluorescence	Ssphi sat	%	Garczarek, Laurence	calculated from AMODIS products	at the sampling location for a period of 30 days around the sampling date, using satellite-based estimates of surface fluorescence and photosynthetically active radiation (Behrenfeld et al. 2009), and corr. for Non-Photochemical Quenching (NPQ)
51	Net primary production of carbon	NPP C	mg/m²/day	Ardyna, Mathieu	Calculated using the Arctic-adapted UQAR-TAKUVIK model	at the sampling location and date
52	Net primary production of carbon	NPP C	mg/m²/day	Chaffron, Samuel	calculated from VGPM products	at the sampling location for a period of 30 days around the sampling date
53	Suspended matter, total	TSS	mg/l	Ardyna, Mathieu	Calculated from GlobColour products (MERIS C2R Neural Network algorithm)	at the sampling location for a period of 8 days around the sampling date
54	Carbon, organic, particulate	POC	µg/kg	Ardyna, Mathieu	Calculated from GlobColour products (GSM algorithm)	at the sampling location for a period of 8 days around the sampling date
55	Carbon, inorganic, particulate	PIC	mol/m³	Ardyna, Mathieu	Calculated from GlobColour products (GSM algorithm)	at the sampling location for a period of 8 days around the sampling date
56	Depth, bathymetric	Bathy depth	m	Speich, Sabrina		at the sampling location and date
57	LATITUDE	Latitude		Speich, Sabrina		Geocode – of the closest geographic coordinate on a coast
58	LONGITUDE	Longitude		Speich, Sabrina		Geocode – of the closest geographic coordinate on a coast
59	Distance	Distance	km	Speich, Sabrina		from the closest geographic coordinate on a coast
60	Sea surface temperature gradient, horizontal	SST grad h	°C/100 km	Speich, Sabrina		at the sampling location and date
61	Strain sub-mesoscale index	SSM index	1/s²	Speich, Sabrina		at the sampling location and date
62	Geostrophic velocity, longitudinal	u	cm/s	d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	at the sampling location and date
63	Geostrophic velocity, latitudinal	v	cm/s	d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	at the sampling location and date
64	Okubo-Weiss parameter	OW		d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	at the sampling location and date [Values<0 indicate inside an eddy; Values>0 indicate outside an eddy]
65	Maximum Lyapunov exponent	MLE	1/day	d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	at the sampling location and date [Values>0.1 indicate the presence of a transport front]
66	Residence time	RT	days	d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	of the water mass at the sampling location and date [Values>30 indicate old water mass; Values<30 indicate young water mass]
67	LATITUDE	Latitude		d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	Geocode – of the continental shelf with a bathymetry <500 m where the sampled water mass originated, based on a back-calculated geostrophic current trajectory
68	LONGITUDE	Longitude		d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	Geocode – of the continental shelf with a bathymetry <500 m where the sampled water mass originated, based on a back-calculated geostrophic current trajectory
69	Age	Age	days	d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	number of days since the sampled water mass has left a continental shelf with a bathymetry >500 m, based on a back-calculated geostrophic current trajectory
70	LATITUDE	Latitude		d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	Geocode – of the geographic coordinate where the sampled water mass originated 45 days before the sampling date, based on a back-calculated geostrophic current trajectory
71	LONGITUDE	Longitude		d'Ovidio, Francesco	Calculated (d'Ovidio et al. 2010)	Geocode – of the geographic coordinate where the sampled water mass originated 45 days before the sampling date, based on a back-calculated geostrophic current trajectory

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Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

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1847508 data points

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