Citation:

bg-14-497-2017

Name: Seawater carbonate chemistry and data of element incorporation in hyaline and porcelaneous foraminifera in laboratory experiment
Published: 2017-05-15
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Amphistegina gibbosa; Archaias angulatus; Asterigerina carinata; Benthos; Bottles or small containers/Aquaria (<20 L); Chromista; Coast and continental shelf; Foraminifera; Heterostegina antillarum; Heterotrophic prokaryotes; Laboratory experiment; Laevipeneroplis bradyi; North Atlantic; Other metabolic rates; Peneroplis pertusus; Planorbulina acervalis; Single species; Sorites marginalis; Temperate

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Abstract:

In this study we analyzed the impact of seawater carbonate chemistry on the incorporation of elements in both hyaline and porcelaneous larger benthic foraminifera. We observed a higher incorporation of Zn and Ba when pCO2 increases from 350 to 1200?ppm. Modeling the activity of free ions as a function of pCO2 shows that speciation of some elements (like Zn and Ba) is mainly influenced by the formation of carbonate complexes in seawater. Hence, differences in foraminiferal uptake of these might be related primarily by the speciation of these elements in seawater. We investigated differences in trends in element incorporation between hyaline (perforate) and porcelaneous (imperforate) foraminifera in order to unravel processes involved in element uptake and subsequent foraminiferal calcification. In hyaline foraminifera we observed a correlation of element incorporation of different elements between species, reflected by a general higher incorporation of elements in species with higher Mg content. Between porcelaneous species, inter-element differences are much smaller. Besides these contrasting trends in element incorporation, however, similar trends are observed in element incorporation as a function of seawater carbonate chemistry in both hyaline and porcelaneous species. This suggests similar mechanisms responsible for the transportation of ions to the site of calcification for these groups of foraminifera, although the contribution of these processes might differ across species.

Keyword(s):

Amphistegina gibbosa; Archaias angulatus; Asterigerina carinata; Benthos; Bottles or small containers/Aquaria (<20 L); Chromista; Coast and continental shelf; Foraminifera; Heterostegina antillarum; Heterotrophic prokaryotes; Laboratory experiment; Laevipeneroplis bradyi; North Atlantic; Other metabolic rates; Peneroplis pertusus; Planorbulina acervalis; Single species; Sorites marginalis; Temperate

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 17.475440 * Longitude: -62.985940

Date/Time Start: 2015-11-01T00:00:00 * Date/Time End: 2015-11-30T00:00:00

Event(s):

Gallows_Bay * Latitude: 17.475440 * Longitude: -62.985940 * Date/Time Start: 2015-11-01T00:00:00 * Date/Time End: 2015-11-30T00:00:00 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-05-12.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		van Dijk, Inge		study
2	Species	Species		van Dijk, Inge
3	Registration number of species	Reg spec no		van Dijk, Inge
4	Uniform resource locator/link to reference	URL ref		van Dijk, Inge		WoRMS Aphia ID
5	Experiment duration	Exp duration	days	van Dijk, Inge
6	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	van Dijk, Inge
7	Magnesium/Calcium ratio	Mg/Ca	mmol/mol	van Dijk, Inge
8	Magnesium/Calcium ratio, standard error	Mg/Ca std e	±	van Dijk, Inge
9	Magnesium, partition coefficient	Mg D		van Dijk, Inge
10	Sodium/Calcium ratio	Na/Ca	mmol/mol	van Dijk, Inge
11	Sodium/Calcium ratio, standard error	Na/Ca std e	±	van Dijk, Inge
12	Sodium, partition coefficient	Na D		van Dijk, Inge
13	Strontium/Calcium ratio	Sr/Ca	mmol/mol	van Dijk, Inge
14	Strontium/Calcium ratio, standard error	Sr/Ca std e	±	van Dijk, Inge
15	Strontium, partition coefficient	Sr D		van Dijk, Inge
16	Zinc/Calcium ratio	Zn/Ca	µmol/mol	van Dijk, Inge
17	Zinc/Calcium ratio, standard error	Zn/Ca Std e	±	van Dijk, Inge
18	Zinc, partition coefficient	Zn D		van Dijk, Inge
19	Barium/Calcium ratio	Ba/Ca	µmol/mol	van Dijk, Inge
20	Barium/Calcium ratio, standard error	Ba/Ca std e	±	van Dijk, Inge
21	Barium, partition coefficient	Ba D		van Dijk, Inge
22	Alkalinity, total	AT	µmol/kg	van Dijk, Inge
23	Alkalinity, total, standard deviation	AT std dev	±	van Dijk, Inge
24	Carbon, inorganic, dissolved	DIC	µmol/kg	van Dijk, Inge
25	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	van Dijk, Inge
26	Carbonate ion	[CO3]2-	µmol/kg	van Dijk, Inge	Calculated using CO2SYS
27	pH	pH		van Dijk, Inge	Calculated using CO2SYS	total scale
28	Calcite saturation state	Omega Cal		van Dijk, Inge	Calculated using CO2SYS
29	Temperature, water	Temp	°C	van Dijk, Inge
30	Temperature, water, standard deviation	Temp std dev	±	van Dijk, Inge
31	Salinity	Sal		van Dijk, Inge
32	Salinity, standard deviation	Sal std dev	±	van Dijk, Inge
33	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
34	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
35	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
36	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
37	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
38	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
39	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
40	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
41	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

1207 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Type (study)	2 Species	3 Reg spec no	4 URL ref (WoRMS Aphia ID)	5 Exp duration [days]	6 pCO2water_SST_wet [µatm]	7 Mg/Ca [mmol/mol]	8 Mg/Ca std e [±]	9 Mg D	10 Na/Ca [mmol/mol]	11 Na/Ca std e [±]	12 Na D	13 Sr/Ca [mmol/mol]	14 Sr/Ca std e [±]	15 Sr D	16 Zn/Ca [µmol/mol]	17 Zn/Ca Std e [±]	18 Zn D	19 Ba/Ca [µmol/mol]	20 Ba/Ca std e [±]	21 Ba D	22 AT [µmol/kg]	23 AT std dev [±]	24 DIC [µmol/kg]	25 DIC std dev [±]	26 [CO3]2- [µmol/kg] (Calculated using CO2SYS)	27 pH (total scale, Calculated using...)	28 Omega Cal (Calculated using CO2SYS)	29 Temp [°C]	30 Temp std dev [±]	31 Sal	32 Sal std dev [±]	33 CSC flag (Calculated using seacarb afte...)	34 pH (total scale, Calculated using...)	35 CO2 [µmol/kg] (Calculated using seacarb afte...)	36 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	37 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	38 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	39 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	40 Omega Arg (Calculated using seacarb afte...)	41 Omega Cal (Calculated using seacarb afte...)
laboratory	Archaias angulatus (protist)	112792	marinespecies.org	21	350	139.4	0.6	0.0266	5.2	0.1	0.00012	2.2	0.02	0.25	80.0	5.1	5.3	13.2	0.5	1.5	2302.8	8.2	2007.5	10.7	220.7	8.06	5.4	25	0.2	34	0.2	15	8.05	11.28	395.11	396.37	1784.57	211.66	3.38	5.14
laboratory	Archaias angulatus (protist)	112792	marinespecies.org	21	450	137.7	0.5	0.0263	4.3	0.1	0.00010	2.2	0.01	0.26	88.1	5.2	5.8	14.6	0.5	1.6	2305.2	5.8	2021.3	12.5	200.0	8.01	4.9	25	0.2	34	0.2	15	8.03	11.95	418.58	419.92	1804.97	204.38	3.26	4.96
laboratory	Archaias angulatus (protist)	112792	marinespecies.org	21	760	137.4	0.7	0.0262	4.9	0.1	0.00011	2.2	0.01	0.26	122.6	7.0	8.1	17.0	0.6	1.9	2304.4	0.9	2100.8	13.4	153.7	7.87	3.7	25	0.2	34	0.2	15	7.88	18.17	636.62	638.66	1929.12	153.51	2.45	3.73
laboratory	Archaias angulatus (protist)	112792	marinespecies.org	21	1200	138.6	1.1	0.0264	5.4	0.2	0.00012	2.2	0.02	0.26	140.8	9.9	9.3	20.9	0.2	2.3	2300.3	0.7	2201.4	4.1	92.2	7.61	2.2	25	0.2	34	0.2	15	7.63	34.78	1218.51	1222.42	2073.93	92.69	1.48	2.25
laboratory	Sorites marginalis (protist)	466086	marinespecies.org	21	350	147.7	0.6	0.0282	4.8	0.1	0.00011	2.0	0.01	0.24	70.0	10.1	4.6	17.0	0.5	1.9	2302.8	8.2	2007.5	10.7	220.7	8.06	5.4	25	0.2	34	0.2	15	8.05	11.28	395.11	396.37	1784.57	211.66	3.38	5.14
laboratory	Sorites marginalis (protist)	466086	marinespecies.org	21	450	144.2	0.8	0.0275	4.1	0.1	0.00009	2.0	0.01	0.23	74.0	10.6	4.9	23.1	0.5	2.6	2305.2	5.8	2021.3	12.5	200.0	8.01	4.9	25	0.2	34	0.2	15	8.03	11.95	418.58	419.92	1804.97	204.38	3.26	4.96
laboratory	Sorites marginalis (protist)	466086	marinespecies.org	21	760	143.0	0.6	0.0273	3.8	0.1	0.00009	2.0	0.01	0.23	87.7	15.5	5.8	27.9	0.6	3.1	2304.4	0.9	2100.8	13.4	153.7	7.87	3.7	25	0.2	34	0.2	15	7.88	18.17	636.62	638.66	1929.12	153.51	2.45	3.73
laboratory	Sorites marginalis (protist)	466086	marinespecies.org	21	1200	148.3	0.5	0.0283	4.5	0.2	0.00010	2.0	0.01	0.23	115.6	15.3	7.6	30.1	0.2	3.3	2300.3	0.7	2201.4	4.1	92.2	7.61	2.2	25	0.2	34	0.2	15	7.63	34.78	1218.51	1222.42	2073.93	92.69	1.48	2.25
laboratory	Laevipeneroplis bradyi (protist)	417774	marinespecies.org	21	350	137.8	1.3	0.0263	5.2	0.2	0.00012	2.1	0.03	0.24	60.0	6.5	4.0	14.0	0.5	1.5	2302.8	8.2	2007.5	10.7	220.7	8.06	5.4	25	0.2	34	0.2	15	8.05	11.28	395.11	396.37	1784.57	211.66	3.38	5.14
laboratory	Laevipeneroplis bradyi (protist)	417774	marinespecies.org	21	450	136.2	0.7	0.0260	4.3	0.1	0.00010	2.2	0.01	0.25	73.8	6.0	4.9	14.2	0.5	1.6	2305.2	5.8	2021.3	12.5	200.0	8.01	4.9	25	0.2	34	0.2	15	8.03	11.95	418.58	419.92	1804.97	204.38	3.26	4.96
laboratory	Laevipeneroplis bradyi (protist)	417774	marinespecies.org	21	760	134.4	1.2	0.0256	3.4	0.1	0.00008	2.0	0.02	0.24	97.5	9.4	6.4	18.5	0.6	2.1	2304.4	0.9	2100.8	13.4	153.7	7.87	3.7	25	0.2	34	0.2	15	7.88	18.17	636.62	638.66	1929.12	153.51	2.45	3.73
laboratory	Laevipeneroplis bradyi (protist)	417774	marinespecies.org	21	1200	136.9	1.1	0.0261	6.2	0.2	0.00014	2.1	0.02	0.24	124.2	7.8	8.2	28.8	0.2	3.2	2300.3	0.7	2201.4	4.1	92.2	7.61	2.2	25	0.2	34	0.2	15	7.63	34.78	1218.51	1222.42	2073.93	92.69	1.48	2.25
laboratory	Peneroplis pertusus (protist)	112815	marinespecies.org	21	350																2302.8	8.2	2007.5	10.7	220.7	8.06	5.4	25	0.2	34	0.2	15	8.05	11.28	395.11	396.37	1784.57	211.66	3.38	5.14
laboratory	Peneroplis pertusus (protist)	112815	marinespecies.org	21	450	126.1	1.8	0.0240	5.2	0.3	0.00012	2.1	0.07	0.25	53.0	10.8	3.5	18.0	0.5	2.0	2305.2	5.8	2021.3	12.5	200.0	8.01	4.9	25	0.2	34	0.2	15	8.03	11.95	418.58	419.92	1804.97	204.38	3.26	4.96
laboratory	Peneroplis pertusus (protist)	112815	marinespecies.org	21	760																2304.4	0.9	2100.8	13.4	153.7	7.87	3.7	25	0.2	34	0.2	15	7.88	18.17	636.62	638.66	1929.12	153.51	2.45	3.73
laboratory	Peneroplis pertusus (protist)	112815	marinespecies.org	21	1200	121.3	1.0	0.0231	5.8	0.2	0.00013	2.2	0.02	0.26	75.5	11.9	5.0	29.8	0.2	3.3	2300.3	0.7	2201.4	4.1	92.2	7.61	2.2	25	0.2	34	0.2	15	7.63	34.78	1218.51	1222.42	2073.93	92.69	1.48	2.25
laboratory	Heterostegina antillarum (protist)	418055	marinespecies.org	21	350																2302.8	8.2	2007.5	10.7	220.7	8.06	5.4	25	0.2	34	0.2	15	8.05	11.28	395.11	396.37	1784.57	211.66	3.38	5.14
laboratory	Heterostegina antillarum (protist)	418055	marinespecies.org	21	450	141.3	0.3	0.0269	19.4	0.5	0.00044	2.7	0.02	0.31	36.0	14.7	2.4	10.7	0.5	1.2	2305.2	5.8	2021.3	12.5	200.0	8.01	4.9	25	0.2	34	0.2	15	8.03	11.95	418.58	419.92	1804.97	204.38	3.26	4.96
laboratory	Heterostegina antillarum (protist)	418055	marinespecies.org	21	760																2304.4	0.9	2100.8	13.4	153.7	7.87	3.7	25	0.2	34	0.2	15	7.88	18.17	636.62	638.66	1929.12	153.51	2.45	3.73
laboratory	Heterostegina antillarum (protist)	418055	marinespecies.org	21	1200	136.9	1.6	0.0261	19.5	0.4	0.00044	2.7	0.02	0.31	97.0	18.3	6.4	20.1	0.2	2.2	2300.3	0.7	2201.4	4.1	92.2	7.61	2.2	25	0.2	34	0.2	15	7.63	34.78	1218.51	1222.42	2073.93	92.69	1.48	2.25
laboratory	Planorbulina acervalis (protist)	418073	marinespecies.org	21	350																2302.8	8.2	2007.5	10.7	220.7	8.06	5.4	25	0.2	34	0.2	15	8.05	11.28	395.11	396.37	1784.57	211.66	3.38	5.14
laboratory	Planorbulina acervalis (protist)	418073	marinespecies.org	21	450	139.1	1.2	0.0265	19.5	0.7	0.00046	3.1	0.02	0.36	31.6	6.6	2.1	11.3	0.5	1.3	2305.2	5.8	2021.3	12.5	200.0	8.01	4.9	25	0.2	34	0.2	15	8.03	11.95	418.58	419.92	1804.97	204.38	3.26	4.96
laboratory	Planorbulina acervalis (protist)	418073	marinespecies.org	21	760																2304.4	0.9	2100.8	13.4	153.7	7.87	3.7	25	0.2	34	0.2	15	7.88	18.17	636.62	638.66	1929.12	153.51	2.45	3.73
laboratory	Planorbulina acervalis (protist)	418073	marinespecies.org	21	1200																2300.3	0.7	2201.4	4.1	92.2	7.61	2.2	25	0.2	34	0.2	15	7.63	34.78	1218.51	1222.42	2073.93	92.69	1.48	2.25
laboratory	Asterigerina carinata (protist)	417987	marinespecies.org	21	350	23.6	1.5	0.0045	9.9	0.4	0.00022	1.8	0.02	0.21	9.0	2.6	0.6	3.2	0.5	0.4	2302.8	8.2	2007.5	10.7	220.7	8.06	5.4	25	0.2	34	0.2	15	8.05	11.28	395.11	396.37	1784.57	211.66	3.38	5.14
laboratory	Asterigerina carinata (protist)	417987	marinespecies.org	21	450	28.5	2.4	0.0054	10.8	0.1	0.00024	1.9	0.01	0.22	10.9	5.5	0.7	6.0	0.5	0.7	2305.2	5.8	2021.3	12.5	200.0	8.01	4.9	25	0.2	34	0.2	15	8.03	11.95	418.58	419.92	1804.97	204.38	3.26	4.96
laboratory	Asterigerina carinata (protist)	417987	marinespecies.org	21	760	33.1	1.2	0.0063	10.9	0.2	0.00024	1.8	0.01	0.21	30.7	7.0	2.0	8.5	0.6	0.9	2304.4	0.9	2100.8	13.4	153.7	7.87	3.7	25	0.2	34	0.2	15	7.88	18.17	636.62	638.66	1929.12	153.51	2.45	3.73
laboratory	Asterigerina carinata (protist)	417987	marinespecies.org	21	1200	33.5	3.1	0.0064	10.6	0.5	0.00024	1.8	0.03	0.21	46.4	2.1	3.1	11.4	0.2	1.3	2300.3	0.7	2201.4	4.1	92.2	7.61	2.2	25	0.2	34	0.2	15	7.63	34.78	1218.51	1222.42	2073.93	92.69	1.48	2.25
laboratory	Amphistegina gibbosa (protist)	112863	marinespecies.org	21	350	27.8	0.5	0.0053	9.0	0.1	0.00020	1.7	0.01	0.20	19.0	1.8	1.3	2.7	0.5	0.3	2302.8	8.2	2007.5	10.7	220.7	8.06	5.4	25	0.2	34	0.2	15	8.05	11.28	395.11	396.37	1784.57	211.66	3.38	5.14
laboratory	Amphistegina gibbosa (protist)	112863	marinespecies.org	21	450	25.9	0.6	0.0049	9.2	0.1	0.00021	1.7	0.02	0.20	21.5	2.5	1.4	3.4	0.5	0.4	2305.2	5.8	2021.3	12.5	200.0	8.01	4.9	25	0.2	34	0.2	15	8.03	11.95	418.58	419.92	1804.97	204.38	3.26	4.96
laboratory	Amphistegina gibbosa (protist)	112863	marinespecies.org	21	760	28.2	0.7	0.0054	9.7	0.1	0.00022	1.7	0.02	0.20	52.8	6.1	3.5	7.1	0.6	0.8	2304.4	0.9	2100.8	13.4	153.7	7.87	3.7	25	0.2	34	0.2	15	7.88	18.17	636.62	638.66	1929.12	153.51	2.45	3.73
laboratory	Amphistegina gibbosa (protist)	112863	marinespecies.org	21	1200	28.7	0.6	0.0055	9.6	0.1	0.00021	1.7	0.02	0.20	85.8	11.3	5.7	9.9	0.2	1.1	2300.3	0.7	2201.4	4.1	92.2	7.61	2.2	25	0.2	34	0.2	15	7.63	34.78	1218.51	1222.42	2073.93	92.69	1.48	2.25