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Su, Wenhao; Zha, Shanjie; Wang, Yichen; Shi, Wei; Xiao, Guoqiang; Chai, Xueliang; Wu, Hongxi; Liu, Guangxu (2017): Benzo[a]pyrene exposure under future ocean acidification scenarios weakens the immune responses of blood clam, Tegillarca granosa [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.875000, Supplement to: Su, W et al. (2017): Benzo[a]pyrene exposure under future ocean acidification scenarios weakens the immune responses of blood clam, Tegillarca granosa. Fish & Shellfish Immunology, 63, 465-470, https://doi.org/10.1016/j.fsi.2017.02.046

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Abstract:
Persistent organic pollutants (POPs) are known to converge into the ocean and accumulate in the sediment, posing great threats to marine organisms such as the sessile bottom burrowing bivalves. However, the immune toxicity of POPs, such as B[a]P, under future ocean acidification scenarios remains poorly understood to date. Therefore, in the present study, the impacts of B[a]P exposure on the immune responses of a bivalve species, Tegillarca granosa, under present and future ocean acidification scenarios were investigated. Results obtained revealed an increased immune toxicity of B[a]P under future ocean acidification scenarios in terms of reduced THC, altered haemocyte composition, and hampered phagocytosis, which may attribute to the synergetic effects of B[a]P and ocean acidification. In addition, the gene expressions of pathogen pattern recognition receptors (TLR1, TLR2, TLR4, TLR6), pathway mediators (TRAF6, TAK1, TAB2, IKKalpha and Myd88), and effectors (NF-kB) of the important immune related pathways were significantly down-regulated upon exposure to B[a]P under future ocean acidification scenarios. Results of the present study suggested an increased immune toxicity of B[a]P under future ocean acidification scenarios, which will significantly hamper the immune responses of T. granosa and subsequently render individuals more susceptible to pathogens challenges.
Keyword(s):
Animalia; Benthic animals; Benthos; Brackish waters; Containers and aquaria (20-1000 L or < 1 m**2); Gene expression (incl. proteomics); Immunology/Self-protection; Laboratory experiment; Mollusca; North Pacific; Organic toxins; Single species; Tegillarca granosa; Temperate
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2017-04-26.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeLiu, Guangxustudy
SpeciesSpeciesLiu, Guangxu
Registration number of speciesReg spec noLiu, Guangxu
Uniform resource locator/link to referenceURL refLiu, GuangxuWoRMS Aphia ID
Experiment durationExp durationdaysLiu, Guangxu
FigureFigLiu, Guangxu
MassMassgLiu, Guangxu
Mass, standard errorMass std e±Liu, Guangxu
TissuesTissuesLiu, Guangxu
10 DateDateLiu, Guangxu
11 TreatmentTreatLiu, Guangxu
12 Gene expressionGene expressionLiu, Guangxufrom Toll-like receptor pathway
13 Gene expression, standard errorGene expression std e±Liu, Guangxufrom Toll-like receptor pathway
14 Gene expressionGene expressionLiu, Guangxufrom NF-kbeta signaling pathway
15 Gene expression, standard errorGene expression std e±Liu, Guangxufrom NF-kbeta signaling pathway
16 pHpHLiu, GuangxuPotentiometricNBS scale
17 pH, standard deviationpH std dev±Liu, GuangxuPotentiometricNBS scale
18 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmLiu, GuangxuCalculated using CO2SYS
19 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Liu, GuangxuCalculated using CO2SYS
20 SalinitySalLiu, Guangxu
21 Salinity, standard deviationSal std dev±Liu, Guangxu
22 Temperature, waterTemp°CLiu, Guangxu
23 Temperature, water, standard deviationTemp std dev±Liu, Guangxu
24 Alkalinity, totalATµmol/kgLiu, GuangxuPotentiometric titration
25 Alkalinity, total, standard deviationAT std dev±Liu, GuangxuPotentiometric titration
26 Carbon, inorganic, dissolvedDICµmol/kgLiu, GuangxuCalculated using CO2SYS
27 Carbon, inorganic, dissolved, standard errorDIC std e±Liu, GuangxuCalculated using CO2SYS
28 Aragonite saturation stateOmega ArgLiu, GuangxuCalculated using CO2SYS
29 Aragonite saturation state, standard deviationOmega Arg std dev±Liu, GuangxuCalculated using CO2SYS
30 Calcite saturation stateOmega CalLiu, GuangxuCalculated using CO2SYS
31 Calcite saturation state, standard deviationOmega Cal std dev±Liu, GuangxuCalculated using CO2SYS
32 Hemocyte countHemocyte#Liu, Guangxu
33 Hemocyte count, standard errorHemocyte std e±Liu, Guangxu
34 Granulocyte, redRed granulocyte%Liu, Guangxu
35 Granulocyte, red, standard errorRed granulocyte std e±Liu, Guangxu
36 Granulocyte, basophilBaso granulocyte%Liu, Guangxu
37 Granulocyte, basophil, standard errorBaso granulocyte std e±Liu, Guangxu
38 HyalinocyteHyalinocyte%Liu, Guangxu
39 Hyalinocyte, standard errorHyalinocyte std e±Liu, Guangxu
40 PhagocytosisPhago%Liu, Guangxu
41 Phagocytosis, standard errorPhago std e±Liu, Guangxu
42 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
44 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1812 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Exp duration [days]

Fig

Mass [g]

Mass std e [±]

Tissues
10 
Date
11 
Treat
12 
Gene expression
(from Toll-like receptor pathway)
13 
Gene expression std e [±]
(from Toll-like receptor pathway)
14 
Gene expression
(from NF-kbeta signaling pathway)
15 
Gene expression std e [±]
(from NF-kbeta signaling pathway)
16 
pH
(NBS scale, Potentiometric)
17 
pH std dev [±]
(NBS scale, Potentiometric)
18 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
19 
pCO2 std dev [±]
(Calculated using CO2SYS)
20 
Sal
21 
Sal std dev [±]
22 
Temp [°C]
23 
Temp std dev [±]
24 
AT [µmol/kg]
(Potentiometric titration)
25 
AT std dev [±]
(Potentiometric titration)
26 
DIC [µmol/kg]
(Calculated using CO2SYS)
27 
DIC std e [±]
(Calculated using CO2SYS)
28 
Omega Arg
(Calculated using CO2SYS)
29 
Omega Arg std dev [±]
(Calculated using CO2SYS)
30 
Omega Cal
(Calculated using CO2SYS)
31 
Omega Cal std dev [±]
(Calculated using CO2SYS)
32 
Hemocyte [#]
33 
Hemocyte std e [±]
34 
Red granulocyte [%]
35 
Red granulocyte std e [±]
36 
Baso granulocyte [%]
37 
Baso granulocyte std e [±]
38 
Hyalinocyte [%]
39 
Hyalinocyte std e [±]
40 
Phago [%]
41 
Phago std e [±]
42 
CSC flag
(Calculated using seacarb afte...)
43 
pH
(total scale, Calculated using...)
44 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
45 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
46 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
47 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
48 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
49 
DIC [µmol/kg]
(Calculated using seacarb afte...)
50 
Omega Arg
(Calculated using seacarb afte...)
51 
Omega Cal
(Calculated using seacarb afte...)
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00control-MyD881.022200.248688.110.01523.6813.9220.560.1525.40.212059.9111.361939.4112.021.660.032.700.05267.9616.16533.45535.151776.41120.821913.392.033.26
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00control-TLR11.008900.168148.110.01523.6813.9220.560.1525.40.212059.9111.361939.4112.021.660.032.700.05267.9616.16533.45535.151776.41120.821913.392.033.26
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00control-TLR21.003950.109898.110.01523.6813.9220.560.1525.40.212059.9111.361939.4112.021.660.032.700.05267.9616.16533.45535.151776.41120.821913.392.033.26
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00control-TLR41.004920.121048.110.01523.6813.9220.560.1525.40.212059.9111.361939.4112.021.660.032.700.05267.9616.16533.45535.151776.41120.821913.392.033.26
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00control-TLR61.010780.176668.110.01523.6813.9220.560.1525.40.212059.9111.361939.4112.021.660.032.700.05267.9616.16533.45535.151776.41120.821913.392.033.26
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00pH7.4 without B[a]P-MyD880.430130.075827.410.012909.4625.5520.580.1025.10.162071.7813.832142.6212.730.370.010.600.01267.2691.933011.613021.262008.4727.022127.410.450.73
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00pH7.4 without B[a]P-TLR10.475200.078787.410.012909.4625.5520.580.1025.10.162071.7813.832142.6212.730.370.010.600.01267.2691.933011.613021.262008.4727.022127.410.450.73
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00pH7.4 without B[a]P-TLR21.775290.231237.410.012909.4625.5520.580.1025.10.162071.7813.832142.6212.730.370.010.600.01267.2691.933011.613021.262008.4727.022127.410.450.73
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00pH7.4 without B[a]P-TLR40.452370.071227.410.012909.4625.5520.580.1025.10.162071.7813.832142.6212.730.370.010.600.01267.2691.933011.613021.262008.4727.022127.410.450.73
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00pH7.4 without B[a]P-TLR60.540620.039927.410.012909.4625.5520.580.1025.10.162071.7813.832142.6212.730.370.010.600.01267.2691.933011.613021.262008.4727.022127.410.450.73
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00B[a]P-MyD880.239590.025678.110.01522.268.1620.750.0724.20.312062.3117.251940.6015.531.670.042.720.05267.9616.49528.31530.011786.07117.541920.101.963.15
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00B[a]P-TLR10.203510.016708.110.01522.268.1620.750.0724.20.312062.3117.251940.6015.531.670.042.720.05267.9616.49528.31530.011786.07117.541920.101.963.15
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00B[a]P-TLR20.221840.021038.110.01522.268.1620.750.0724.20.312062.3117.251940.6015.531.670.042.720.05267.9616.49528.31530.011786.07117.541920.101.963.15
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00B[a]P-TLR40.160900.006778.110.01522.268.1620.750.0724.20.312062.3117.251940.6015.531.670.042.720.05267.9616.49528.31530.011786.07117.541920.101.963.15
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00B[a]P-TLR60.305830.060968.110.01522.268.1620.750.0724.20.312062.3117.251940.6015.531.670.042.720.05267.9616.49528.31530.011786.07117.541920.101.963.15
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00pH7.4 with B[a]P-MyD880.024100.003147.410.012884.2238.9220.700.0225.00.222057.0715.882126.9615.620.370.010.600.01267.2691.222982.572992.141994.0626.842112.120.450.72
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00pH7.4 with B[a]P-TLR10.100450.023057.410.012884.2238.9220.700.0225.00.222057.0715.882126.9615.620.370.010.600.01267.2691.222982.572992.141994.0626.842112.120.450.72
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00pH7.4 with B[a]P-TLR20.203080.046357.410.012884.2238.9220.700.0225.00.222057.0715.882126.9615.620.370.010.600.01267.2691.222982.572992.141994.0626.842112.120.450.72
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00pH7.4 with B[a]P-TLR40.071410.012457.410.012884.2238.9220.700.0225.00.222057.0715.882126.9615.620.370.010.600.01267.2691.222982.572992.141994.0626.842112.120.450.72
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2818.281.85gills2016-08-16T00:00pH7.4 with B[a]P-TLR60.069340.023927.410.012884.2238.9220.700.0225.00.222057.0715.882126.9615.620.370.010.600.01267.2691.222982.572992.141994.0626.842112.120.450.72
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00control-TRAF61.002700.091108.110.01523.6813.9220.560.1525.40.212059.9111.361939.4112.021.660.032.700.05267.9616.16533.45535.151776.41120.821913.392.033.26
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00control-TAB21.007840.156468.110.01523.6813.9220.560.1525.40.212059.9111.361939.4112.021.660.032.700.05267.9616.16533.45535.151776.41120.821913.392.033.26
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00control-TAK11.009270.172618.110.01523.6813.9220.560.1525.40.212059.9111.361939.4112.021.660.032.700.05267.9616.16533.45535.151776.41120.821913.392.033.26
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00control-IKKa0.032780.332178.110.01523.6813.9220.560.1525.40.212059.9111.361939.4112.021.660.032.700.05267.9616.16533.45535.151776.41120.821913.392.033.26
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00control-NF-kB0.100370.105978.110.01523.6813.9220.560.1525.40.212059.9111.361939.4112.021.660.032.700.05267.9616.16533.45535.151776.41120.821913.392.033.26
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00pH7.4 without B[a]P-TRAF60.542050.149907.410.012909.4625.5520.580.1025.10.162071.7813.832142.6212.730.370.010.600.01267.2691.933011.613021.262008.4727.022127.410.450.73
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00pH7.4 without B[a]P-TAB23.075820.576017.410.012909.4625.5520.580.1025.10.162071.7813.832142.6212.730.370.010.600.01267.2691.933011.613021.262008.4727.022127.410.450.73
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00pH7.4 without B[a]P-TAK10.716590.077927.410.012909.4625.5520.580.1025.10.162071.7813.832142.6212.730.370.010.600.01267.2691.933011.613021.262008.4727.022127.410.450.73
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00pH7.4 without B[a]P-IKKa0.503700.046507.410.012909.4625.5520.580.1025.10.162071.7813.832142.6212.730.370.010.600.01267.2691.933011.613021.262008.4727.022127.410.450.73
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00pH7.4 without B[a]P-NF-kB0.687770.057807.410.012909.4625.5520.580.1025.10.162071.7813.832142.6212.730.370.010.600.01267.2691.933011.613021.262008.4727.022127.410.450.73
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00B[a]P-TRAF60.628760.022018.110.01522.268.1620.750.0724.20.312062.3117.251940.6015.531.670.042.720.05267.9616.49528.31530.011786.07117.541920.101.963.15
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00B[a]P-TAB21.843440.471538.110.01522.268.1620.750.0724.20.312062.3117.251940.6015.531.670.042.720.05267.9616.49528.31530.011786.07117.541920.101.963.15
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00B[a]P-TAK10.700780.083248.110.01522.268.1620.750.0724.20.312062.3117.251940.6015.531.670.042.720.05267.9616.49528.31530.011786.07117.541920.101.963.15
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00B[a]P-IKKa0.568990.046688.110.01522.268.1620.750.0724.20.312062.3117.251940.6015.531.670.042.720.05267.9616.49528.31530.011786.07117.541920.101.963.15
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00B[a]P-NF-kB0.640190.051988.110.01522.268.1620.750.0724.20.312062.3117.251940.6015.531.670.042.720.05267.9616.49528.31530.011786.07117.541920.101.963.15
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00pH7.4 with B[a]P-TRAF60.221820.009107.410.012884.2238.9220.700.0225.00.222057.0715.882126.9615.620.370.010.600.01267.2691.222982.572992.141994.0626.842112.120.450.72
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00pH7.4 with B[a]P-TAB21.545100.071877.410.012884.2238.9220.700.0225.00.222057.0715.882126.9615.620.370.010.600.01267.2691.222982.572992.141994.0626.842112.120.450.72
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00pH7.4 with B[a]P-TAK10.541090.019287.410.012884.2238.9220.700.0225.00.222057.0715.882126.9615.620.370.010.600.01267.2691.222982.572992.141994.0626.842112.120.450.72
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00pH7.4 with B[a]P-IKKa0.293250.060927.410.012884.2238.9220.700.0225.00.222057.0715.882126.9615.620.370.010.600.01267.2691.222982.572992.141994.0626.842112.120.450.72
laboratoryTegillarca granosa (mollusk)504471marinespecies.org2828.281.85gills2016-08-16T00:00pH7.4 with B[a]P-NF-kB0.477720.073697.410.012884.2238.9220.700.0225.00.222057.0715.882126.9615.620.370.010.600.01267.2691.222982.572992.141994.0626.842112.120.450.72
laboratoryTegillarca granosa (mollusk)504471marinespecies.org28pH 8.1 without B[a]P (Control)8.110.01523.6813.9220.560.1523.90.202059.9111.361939.4212.021.660.032.700.058733000026300000.8420.0030.1270.0030.0310.0020.5450.013267.9616.64528.40530.111787.94115.801920.381.933.11
laboratoryTegillarca granosa (mollusk)504471marinespecies.org28B[a]P exposure at pH 8.18.110.01522.268.1620.750.0724.10.102062.3217.251940.6015.531.670.032.720.057285000024900000.8250.0050.1500.0030.0250.0030.4270.016267.9616.53527.95529.661786.84117.211920.571.953.14
laboratoryTegillarca granosa (mollusk)504471marinespecies.org28pH 7.8 without B[a]P7.800.011139.2015.9320.670.0724.00.202069.2017.452036.0016.850.870.021.420.038289000080000000.8290.0050.1440.0060.0280.0010.5370.017267.6536.461161.141164.911924.8061.472022.731.021.65
laboratoryTegillarca granosa (mollusk)504471marinespecies.org28B[a]P exposure at pH 7.87.800.011130.0218.5920.650.0223.90.202051.1013.912018.1313.730.860.011.410.027324000021200000.7560.0040.2070.0040.0370.0040.4330.012267.6536.211150.211153.941908.3160.712005.231.011.63
laboratoryTegillarca granosa (mollusk)504471marinespecies.org28pH 7.4 without B[a]P7.410.012909.4625.5520.580.1023.90.202071.7813.832142.6212.730.370.010.600.015256000019500000.7600.0100.2120.0100.0280.0010.4290.017267.2693.792977.712987.402010.7826.002130.570.430.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org28B[a]P exposure at pH 7.47.410.012884.2238.9320.700.0124.00.102057.0715.882126.9615.620.370.010.600.014807000020700000.7460.0050.2260.0050.0290.0010.2960.008267.2692.762954.642964.241995.9925.992114.740.430.70