Jacob, Marianne; Soltwedel, Thomas; Boetius, Antje; Ramette, Alban (2017): Bacterial sequence information for surface sediments of HAUSGARTEN during Polarstern cruise ARKXXIV/2 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.874416
Always quote citation above when using data! You can download the citation in several formats below.
Related to:
Jacob, Marianne; Soltwedel, Thomas; Boetius, Antje; Ramette, Alban (2013): Biogeography of Deep-Sea Benthic Bacteria at Regional Scale (LTER HAUSGARTEN, Fram Strait, Arctic). PLoS ONE, 8(9), e72779, https://doi.org/10.1371/journal.pone.0072779
Project(s):
Coverage:
Median Latitude: 79.144531 * Median Longitude: 4.699092 * South-bound Latitude: 78.608000 * West-bound Longitude: 3.571200 * North-bound Latitude: 79.717300 * East-bound Longitude: 6.096500
Date/Time Start: 2009-07-12T15:23:00 * Date/Time End: 2009-07-18T07:42:00
Minimum DEPTH, sediment/rock: 0.005 m * Maximum DEPTH, sediment/rock: 0.005 m
Event(s):
PS74/106-3 (HG_VI) * Latitude: 79.057000 * Longitude: 3.571200 * Date/Time: 2009-07-12T15:23:00 * Elevation: -3535.3 m * Location: North Greenland Sea * Campaign: ARK-XXIV/2 (PS74) * Basis: Polarstern * Method/Device: MultiCorer (MUC)
PS74/107-2 (HG_III) * Latitude: 79.108300 * Longitude: 4.599800 * Date/Time: 2009-07-12T20:36:00 * Elevation: -1895.0 m * Location: North Greenland Sea * Campaign: ARK-XXIV/2 (PS74) * Basis: Polarstern * Method/Device: MultiCorer (MUC)
PS74/108-2 (HG_II) * Latitude: 79.130500 * Longitude: 4.902700 * Date/Time: 2009-07-12T23:38:00 * Elevation: -1547.4 m * Location: North Greenland Sea * Campaign: ARK-XXIV/2 (PS74) * Basis: Polarstern * Method/Device: MultiCorer (MUC)
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Event label | Event | Jacob, Marianne | |||
| 2 | Latitude of event | Latitude | Jacob, Marianne | |||
| 3 | Longitude of event | Longitude | Jacob, Marianne | |||
| 4 | Elevation of event | Elevation | m | Jacob, Marianne | ||
| 5 | DEPTH, sediment/rock | Depth sed | m | Jacob, Marianne | Geocode | |
| 6 | Depth, top/min | Depth top | m | Jacob, Marianne | ||
| 7 | Depth, bottom/max | Depth bot | m | Jacob, Marianne | ||
| 8 | File name | File name | Jacob, Marianne | in sff | ||
| 9 | Sample code/label | Sample label | Jacob, Marianne | |||
| 10 | Sample comment | Sample comment | Jacob, Marianne | Subsample | ||
| 11 | Domain, biology | Domain | Jacob, Marianne | |||
| 12 | Region, genetic | Region | Jacob, Marianne | |||
| 13 | Instrument | Instrument | Jacob, Marianne | |||
| 14 | Laboratory | Lab | Jacob, Marianne | Sequencing Center | ||
| 15 | Comment | Comment | Jacob, Marianne | |||
| 16 | Method comment | Method comm | Jacob, Marianne | NA Extraction method | ||
| 17 | Primers | Primers | Jacob, Marianne | |||
| 18 | Barcode, genetic | Barcode | Jacob, Marianne | |||
| 19 | Run | Run | Jacob, Marianne | |||
| 20 | Date | Date | Jacob, Marianne | Time of sequencing | ||
| 21 | Comment | Comment | Jacob, Marianne | Sequence Info | ||
| 22 | Accession number, genetics | Access no gen | Jacob, Marianne |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
212 data points
Data
| 1 Event | 2 Latitude | 3 Longitude | 4 Elevation [m] | 5 Depth sed [m] | 6 Depth top [m] | 7 Depth bot [m] | 8 File name (in sff) | 9 Sample label | 10 Sample comment (Subsample) | 11 Domain | 12 Region | 13 Instrument | 14 Lab (Sequencing Center) | 15 Comment | 16 Method comm (NA Extraction method) | 17 Primers | 18 Barcode | 19 Run | 20 Date (Time of sequencing) | 21 Comment (Sequence Info) | 22 Access no gen |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PS74/106-3 | 79.0570 | 3.5712 | -3535 | 0.005 | 0 | 0.01 | HGB_0015.sff | HGVI | HGVI sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | TGATA | 1 | 2010 | insdc:SRX309888 | |
| PS74/107-2 | 79.1083 | 4.5998 | -1895 | 0.005 | 0 | 0.01 | HGB_0012.sff | HGIII | HGIII sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | TCTGT | 1 | 2010 | insdc:SRX309885 | |
| PS74/108-2 | 79.1305 | 4.9027 | -1547 | 0.005 | 0 | 0.01 | HGB_0011.sff | HGII | HGII sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | TCGCT | 1 | 2010 | insdc:SRX309884 | |
| PS74/109-2 | 79.1345 | 6.0965 | -1285 | 0.005 | 0 | 0.01 | HGB_0010.sff | HGI | HGI sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | TACTA | 1 | 2010 | insdc:SRX309883 | |
| PS74/113-2 | 79.0635 | 3.6595 | -3106 | 0.005 | 0 | 0.01 | HGB_0014_2.sff | HGV | HGV sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | AGACA | 2 | 2010 | 2nd round of sequencing due to low numbers of reads in first run | insdc:SRX309887 |
| PS74/116-2 | 79.7173 | 4.4868 | -2802 | 0.005 | 0 | 0.01 | HGB_0018.sff | N4 | N4 sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | ACTAT | 1 | 2010 | insdc:SRX309891 | |
| PS74/118-2 | 79.6040 | 5.1678 | -2787 | 0.005 | 0 | 0.01 | HGB_0023.sff | N3 | S1 sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | CGCGA | 1 | 2010 | 2nd round of sequencing | insdc:SRX309893 |
| PS74/119-2 | 79.4100 | 4.6908 | -2545 | 0.005 | 0 | 0.01 | HGB_0017.sff | N2 | N2 sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | TAGCA | 1 | 2010 | insdc:SRX309890 | |
| PS74/120-2 | 79.2833 | 4.3292 | -2401 | 0.005 | 0 | 0.01 | HGB_0016.sff | N1 | N1 sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | TCACA | 1 | 2010 | insdc:SRX309889 | |
| PS74/121-1 | 79.0648 | 4.1820 | -2464 | 0.005 | 0 | 0.01 | HGB_0013.sff | HGIV | HGIV sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | TGCGT | 1 | 2010 | insdc:SRX309886 | |
| PS74/127-2 | 78.9175 | 5.0012 | -2637 | 0.005 | 0 | 0.01 | HGB_0024.sff | S1 | S2 sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | CGTCT | 1 | 2010 | 2nd round of sequencing | insdc:SRX309894 |
| PS74/128-2 | 78.7802 | 5.3277 | -2473 | 0.005 | 0 | 0.01 | HGB_0025.sff | S2 | S3 sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | CTCGT | 1 | 2010 | 2nd round of sequencing | insdc:SRX309895 |
| PS74/129-3 | 78.6080 | 5.0730 | -2340 | 0.005 | 0 | 0.01 | HGB_0019.sff | S3 | S3 sediment pooled from 3 MUCs | Bacteria | v4-v6 | 454 GS FLX Titanium | Marine Biological Laboratory, Woods Hole | DNA | MoBio UltraClean Soil | CTAACCGANGAACCTYACC CNACGCGAAGAACCTTANC CAACGCGMARAACCTTACC ATACGCGARGAACCTTACC and CGACAGCCATGCANCACCT CGACAACCATGCANCACCT CGACGGCCATGCANCACCT CGACGACCATGCANCACCT | CAGTA | 1 | 2010 | insdc:SRX309892 |