Hong, Haizheng; Shen, Rong; Zhang, Futing; Wen, Zuozhu; Chang, Siwei; Lin, Wenfang; Kranz, Sven A; Luo, Ya-Wei; Kao, Shuh-Ji; Morel, Francois M M; Shi, Dalin (2017): (Figures 3A+C) Changes of protein abundance in response to ocean acidification in Trichodesmium erythraeum [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.874143, In supplement to: Hong, H et al. (2017): The complex effects of ocean acidification on the prominent N2-fixing cyanobacterium Trichodesmium. Science, 356(6337), 527-531, https://doi.org/10.1126/science.aal2981
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Comment:
Statistical analysis was performed by t test followed by the Benjamini-Hochberg procedure for the false discovery rate correction (FDR at 0.05).
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Name | Name | Shi, Dalin | metabolic pathway | ||
| 2 | Name | Name | Shi, Dalin | Abbreviation | ||
| 3 | Protein name | Protein | Shi, Dalin | and functions | ||
| 4 | Ratio | Ratio | Shi, Dalin | Low Fe: fold changed (acidified/ambient) | ||
| 5 | Ratio, standard deviation | Ratio std dev | ± | Shi, Dalin | Low Fe | |
| 6 | Comment | Comment | Shi, Dalin | Low Fe, statistical significance y/n | ||
| 7 | Ratio | Ratio | Shi, Dalin | High Fe: fold changed (acidified/ambient) | ||
| 8 | Ratio, standard deviation | Ratio std dev | ± | Shi, Dalin | High Fe | |
| 9 | Comment | Comment | Shi, Dalin | High Fe, statistical significance y/n |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
189 data points
Data
| 1 Name (metabolic pathway) | 2 Name (Abbreviation) | 3 Protein (and functions) | 4 Ratio (Low Fe: fold changed (acidifi...) | 5 Ratio std dev [±] (Low Fe) | 6 Comment (Low Fe, statistical significa...) | 7 Ratio (High Fe: fold changed (acidif...) | 8 Ratio std dev [±] (High Fe) | 9 Comment (High Fe, statistical signific...) |
|---|---|---|---|---|---|---|---|---|
| PSII | PsbE | Cytochrome b559 subunit alpha | 1.40 | 0.02 | Y | 1.00 | 0.02 | N |
| PSI | PsaC | Photosystem I iron-sulfur center | 0.45 | 0.01 | Y | 1.36 | 0.03 | Y |
| ATP synthase | AtpB | ATP synthase subunit a | 0.50 | 0.03 | Y | 1.46 | 0.04 | Y |
| CCM | CcmM | Carbonate dehydratase, CO2 concentrating protein ccmM | 0.86 | 0.00 | N | 0.92 | 0.01 | N |
| RubisCO | RbcL | Ribulose bisphophate carboxylase large chain | 0.96 | 0.01 | N | 0.97 | 0.02 | N |
| TCA cycle | Cs | citrate synthase | 1.16 | 0.03 | N | 1.31 | 0.02 | Y |
| TCA cycle | Ssadh | succinate semialdehyde dehydrogenase | 0.89 | 0.01 | N | 1.32 | 0.01 | Y |
| TCA cycle | Fh | fumarase | 0.78 | 0.06 | Y | 1.62 | 0.04 | Y |
| TCA cycle | SdhB | succinate dehydrogenase subunit B | 0.69 | 0.02 | Y | 1.07 | 0.03 | N |
| Electron transfer and proton pump | NdhI | NAD(P)H-quinone oxidoreductase subunit I | 0.76 | 0.03 | N | 1.22 | 0.06 | Y |
| Electron transfer and proton pump | NdhA | NAD(P)H-quinone oxidoreductase subunit 1 | 0.54 | 0.02 | Y | 1.29 | 0.04 | Y |
| Electron transfer and proton pump | NdhF | proton-translocating NADH-quinone oxidoreductase, chain L | 0.45 | 0.01 | Y | 1.29 | 0.07 | Y |
| Electron transfer and proton pump | CoxI | cytochrome C oxidase subunit I | 0.78 | 0.08 | Y | 1.16 | 0.00 | N |
| Electron transfer and proton pump | PetA | Cytochrome f | 0.61 | 0.01 | Y | 1.20 | 0.01 | Y |
| Membrane Transporters | AbcB3 | ABC-type multidrug transporter, ATPase component | 0.90 | 0.03 | N | 1.44 | 0.15 | Y |
| Membrane Transporters | DctP | TRAP dicarboxylate transporter | 1.20 | 0.01 | Y | 1.04 | 0.03 | N |
| Membrane Transporters | Ycf38 | ABC-type multidrug transporter, permease component | 1.45 | 0.05 | Y | 1.31 | 0.10 | Y |
| Membrane Transporters | OppD | Oligopeptide transport ATP-binding protein | 1.67 | 0.29 | Y | 1.06 | 0.05 | N |
| Membrane Transporters | Tery_3943 | ABC-type transporter substrate-binding protein | 1.71 | 0.08 | Y | 0.95 | 0.03 | N |
| Membrane Transporters | Tery_3406 | Predicted Na+:solute symporter | 1.44 | 0.04 | Y | 0.99 | 0.05 | N |
| Nitrogen fixation | NifH | Nitrogenase iron protein | 1.67 | 0.24 | Y | 1.16 | 0.02 | Y |