Not logged in
PANGAEA.
Data Publisher for Earth & Environmental Science

Zhao, Liqiang; Schöne, Bernd R; Mertz-Kraus, Regina; Yang, Feng (2016): Sodium provides unique insights into transgenerational effects of ocean acidification on bivalve shell formation [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.874083, Supplement to: Zhao, L et al. (2017): Sodium provides unique insights into transgenerational effects of ocean acidification on bivalve shell formation. Science of the Total Environment, 577, 360-366, https://doi.org/10.1016/j.scitotenv.2016.10.200

Always quote citation above when using data! You can download the citation in several formats below.

RIS CitationBibTeX CitationShow MapGoogle Earth

Abstract:
Ocean acidification is likely to have profound impacts on marine bivalves, especially on their early life stages. Therefore, it is imperative to know whether and to what extent bivalves will be able to acclimate or adapt to an acidifying ocean over multiple generations. Here, we show that reduced seawater pH projected for the end of this century (i.e., pH 7.7) led to a significant decrease of shell production of newly settled juvenile Manila clams, Ruditapes philippinarum. However, juveniles from parents exposed to low pH grew significantly faster than those from parents grown at ambient pH, exhibiting a rapid transgenerational acclimation to an acidic environment. The sodium composition of the shells may shed new light on the mechanisms responsible for beneficial transgenerational acclimation. Irrespective of parental exposure, the amount of Na incorporated into shells increased with decreasing pH, implying active removal of excessive protons through the Na+/H+ exchanger which is known to depend on the Na+ gradient actively built up by the Na+/K+-ATPase as a driving force. However, the shells with a prior history of transgenerational exposure to low pH recorded significantly lower amounts of Na than those with no history of acidic exposure. It therefore seems very likely that the clams may implement less costly and more ATP-efficient ion regulatory mechanisms to maintain pH homeostasis in the calcifying fluid following transgenerational acclimation. Our results suggest that marine bivalves may have a greater capacity to acclimate or adapt to ocean acidification by the end of this century than currently understood.
Keyword(s):
Acid-base regulation; Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Mollusca; North Pacific; Ruditapes philippinarum; Single species; Temperate
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Coverage:
Latitude: 39.070670 * Longitude: 122.246170
Date/Time Start: 2014-04-01T00:00:00 * Date/Time End: 2014-04-30T00:00:00
Event(s):
Liangshui_Bay * Latitude: 39.070670 * Longitude: 122.246170 * Date/Time Start: 2014-04-01T00:00:00 * Date/Time End: 2014-04-30T00:00:00 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-03-30.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeSchöne, Bernd Rstudy
SpeciesSpeciesSchöne, Bernd R
Registration number of speciesReg spec noSchöne, Bernd R
Uniform resource locator/link to referenceURL refSchöne, Bernd RWoRMS Aphia ID
Sample IDSample IDSchöne, Bernd R
TreatmentTreatSchöne, Bernd RParental exposure pH
TreatmentTreatSchöne, Bernd RJuvenile exposure pH
Growth rateµmm/daySchöne, Bernd Rshell
Sodium/Calcium ratioNa/Cammol/molSchöne, Bernd Rshell
10 Temperature, waterTemp°CSchöne, Bernd R
11 Temperature, water, standard errorT std e±Schöne, Bernd R
12 SalinitySalSchöne, Bernd R
13 Salinity, standard errorSal std e±Schöne, Bernd R
14 pHpHSchöne, Bernd Rtotal scale
15 pH, standard errorpH std e±Schöne, Bernd Rtotal scale
16 Alkalinity, totalATµmol/kgSchöne, Bernd R
17 Alkalinity, total, standard errorAT std e±Schöne, Bernd R
18 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmSchöne, Bernd R
19 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Schöne, Bernd R
20 Aragonite saturation stateOmega ArgSchöne, Bernd R
21 Aragonite saturation state, standard errorOmega Arg std e±Schöne, Bernd R
22 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
23 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
24 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
25 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
26 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
2400 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Sample ID

Treat
(Parental exposure pH)

Treat
(Juvenile exposure pH)

µ [mm/day]
(shell)

Na/Ca [mmol/mol]
(shell)
10 
Temp [°C]
11 
T std e [±]
12 
Sal
13 
Sal std e [±]
14 
pH
(total scale)
15 
pH std e [±]
(total scale)
16 
AT [µmol/kg]
17 
AT std e [±]
18 
pCO2water_SST_wet [µatm]
19 
pCO2water_SST_wet std e [±]
20 
Omega Arg
21 
Omega Arg std e [±]
22 
CSC flag
23 
CO2 [µmol/kg]
24 
fCO2water_SST_wet [µatm]
25 
pCO2water_SST_wet [µatm]
26 
[HCO3]- [µmol/kg]
27 
[CO3]2- [µmol/kg]
28 
DIC [µmol/kg]
29 
Omega Arg
30 
Omega Cal
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org18.18.10.0412518.7520.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org28.18.10.0214815.4720.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org38.18.10.0255013.7820.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org48.18.10.0312816.1420.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org58.18.10.0300814.7120.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org68.18.10.0319317.0820.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org78.18.10.0295515.0220.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org88.18.10.0254315.0020.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org98.18.10.0175813.9020.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org108.18.10.0254316.9220.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org118.18.10.0278813.3520.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org128.18.10.0273516.1920.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org138.18.10.0194815.6620.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org148.18.10.0190018.9520.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org158.18.10.0194818.6320.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org168.18.10.0231518.3220.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org178.18.10.0262518.8020.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org188.18.10.0214018.7020.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org198.18.10.0159518.1820.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org208.18.10.0157817.5520.210.0631.370.058.050.01225025378222.820.11813.08398.21399.571832.94170.772016.792.714.19
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org218.17.70.0137020.7920.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org228.17.70.0173019.7520.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org238.17.70.0130320.5920.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org248.17.70.0124319.2420.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org258.17.70.0153020.6620.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org268.17.70.0183019.7820.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org278.17.70.0180321.1120.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org288.17.70.0134319.3220.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org298.17.70.0152819.7020.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org308.17.70.0155820.6020.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org318.17.70.0121518.9220.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org328.17.70.0178018.6320.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org338.17.70.0184518.5220.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org348.17.70.0139520.4220.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org358.17.70.0136320.1320.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org368.17.70.0196319.8320.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org378.17.70.0157321.1320.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org388.17.70.0149819.6920.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org398.17.70.0109819.2320.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org408.17.70.0147816.7920.380.0531.490.077.710.01222819982391.350.03831.33958.74961.992016.0186.662134.001.372.13
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org417.78.10.0197816.9720.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org427.78.10.0169017.0020.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org437.78.10.0144516.7020.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org447.78.10.0117016.6120.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org457.78.10.0170317.3120.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org467.78.10.0155015.9720.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org477.78.10.0273517.4020.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org487.78.10.0380317.8720.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org497.78.10.0170318.4920.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org507.78.10.0246519.2820.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org517.78.10.0248815.0320.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org527.78.10.0251318.6820.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org537.78.10.0235319.2120.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org547.78.10.0209017.6620.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org557.78.10.0365318.0020.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org567.78.10.0187518.7720.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org577.78.10.0230019.2520.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org587.78.10.0241516.4720.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org597.78.10.0244017.3320.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org607.78.10.0304318.0820.290.0631.410.068.070.01223523389282.750.13812.27374.22375.491803.08176.611991.952.804.34
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org617.77.70.0216322.0820.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org627.77.70.0217516.8320.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org637.77.70.0268318.5620.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org647.77.70.0261820.2020.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org657.77.70.0282017.7320.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org667.77.70.0232318.4220.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org677.77.70.0307019.5520.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org687.77.70.0174519.5020.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org697.77.70.0130818.2720.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org707.77.70.0131817.4920.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org717.77.70.0291314.2120.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org727.77.70.0219314.0920.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org737.77.70.0259518.1320.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org747.77.70.0183518.3120.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org757.77.70.0244817.8620.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org767.77.70.0354520.6920.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org777.77.70.0142318.3420.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org787.77.70.0173019.0620.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org797.77.70.0173018.8220.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.org807.77.70.0222819.4420.440.0531.380.057.690.01229231976281.430.02833.911038.711042.232084.0185.512203.431.362.10