Citation:

fmars.2017.00073

Name: Measurements of microbial processes, dissolution, water and porewater chemistry during experiments on two coral reef sediments: Sediment characteristics
Creator: Artur Fink
Published: 2017-03-22
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Benthos; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Entire community; Laboratory experiment; Soft-bottom community; Tropical

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Keyword(s):

Benthos; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Entire community; Laboratory experiment; Soft-bottom community; Tropical

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb

Project(s):

Biological Impacts of Ocean Acidification (BIOACID)

Coverage:

Date/Time Start: 2014-01-01T00:00:00 * Date/Time End: 2015-01-01T00:00:00

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-03-22.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	DATE/TIME	Date/Time		Fink, Artur		Geocode
2	Origin	Origin		Fink, Artur		sediment
3	Sample code/label	Sample label		Fink, Artur		timepoint
4	Treatment	Treat		Fink, Artur
5	Replicate	Repl		Fink, Artur
6	Depth, nominal	Depth nominal		Fink, Artur		depth in mm
7	Porosity	Poros	% vol	Fink, Artur
8	Permeability	Permeab	H/m	Fink, Artur
9	Grains	Grains	#/g	Fink, Artur		<63
10	Grains	Grains	#/g	Fink, Artur		63
11	Grains	Grains	#/g	Fink, Artur		125
12	Grains	Grains	#/g	Fink, Artur		250
13	Grains	Grains	#/g	Fink, Artur		500
14	Grains	Grains	#/g	Fink, Artur		1000
15	Grains	Grains	#/g	Fink, Artur		2000
16	Grain size, mean radius	Radius mean	mm	Fink, Artur
17	Nitrogen, total	TN	%	Fink, Artur
18	Carbon, total	TC	%	Fink, Artur
19	Carbon, organic, total	TOC	%	Fink, Artur
20	Carbon, inorganic, total	TIC	%	Fink, Artur
21	pH	pH		Fink, Artur		total scale
22	pH, standard error	pH std e	±	Fink, Artur		total scale
23	Alkalinity, total	AT	µmol/kg	Fink, Artur
24	Standard error	Std e	±	Fink, Artur
25	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Fink, Artur
26	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Fink, Artur
27	Carbon, inorganic, dissolved	DIC	µmol/l	Fink, Artur
28	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Fink, Artur
29	Calcite saturation state	Omega Cal		Fink, Artur
30	Standard error	Std e	±	Fink, Artur
31	Aragonite saturation state	Omega Arg		Fink, Artur
32	Standard error	Std e	±	Fink, Artur
33	High magnesium calcite saturation state	Omega HMC		Fink, Artur
34	Standard error	Std e	±	Fink, Artur
35	Temperature, water	Temp	°C	Fink, Artur
36	Standard error	Std e	±	Fink, Artur
37	Salinity	Sal		Fink, Artur
38	Standard error	Std e	±	Fink, Artur
39	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
40	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
41	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
42	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
43	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
44	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
45	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
46	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
47	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Size:

1060 data points

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