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Fink, Artur (2017): Measurements of microbial processes, dissolution, water and porewater chemistry during experiments on two coral reef sediments: Seawater carbonate chemistry. PANGAEA, https://doi.org/10.1594/PANGAEA.873831, In supplement to: Fink, Artur; den Haan, Joost; Chennu, Arjun; Uthicke, Sven; de Beer, Dirk (2017): Ocean Acidification Changes Abiotic Processes but Not Biotic Processes in Coral Reef Sediments. Frontiers in Marine Science, 4, https://doi.org/10.3389/fmars.2017.00073

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Keyword(s):
Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Entire community; Laboratory experiment; Soft-bottom community; Tropical
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Coverage:
Date/Time Start: 2014-01-01T00:00:00 * Date/Time End: 2015-01-01T00:00:00
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-03-22.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
DATE/TIMEDate/TimeFink, ArturGeocode
OriginOriginFink, Artursediment
Sample code/labelSample labelFink, Arturday
TreatmentTreatFink, Artur
ReplicateReplFink, Artur
pHpHFink, Arturtotal scale
Temperature, waterTemp°CFink, Artur
SalinitySalFink, Artur
Alkalinity, totalATµmol/kgFink, Artur
10 Carbon, inorganic, dissolvedDICµmol/lFink, Artur
11 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmFink, Artur
12 Calcite saturation stateOmega CalFink, Artur
13 Aragonite saturation stateOmega ArgFink, Artur
14 High magnesium calcite saturation stateOmega HMCFink, ArturSaturation state of biogenic 13Mg-Calcite
15 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
16 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
17 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
18 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
19 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
20 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
21 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
22 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
23 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Size:
1788 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Date/Time

Origin
(sediment)

Sample label
(day)

Treat

Repl

pH
(total scale)

Temp [°C]

Sal

AT [µmol/kg]
10 
DIC [µmol/l]
11 
pCO2water_SST_wet [µatm]
12 
Omega Cal
13 
Omega Arg
14 
Omega HMC
(Saturation state of biogenic ...)
15 
CSC flag
16 
CO2 [µmol/kg]
17 
fCO2water_SST_wet [µatm]
18 
pCO2water_SST_wet [µatm]
19 
[HCO3]- [µmol/kg]
20 
[CO3]2- [µmol/kg]
21 
DIC [µmol/kg]
22 
Omega Arg
23 
Omega Cal
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