Citation:

fmars.2017.00073

Name: Measurements of microbial processes, dissolution, water and porewater chemistry during experiments on two coral reef sediments: Magnetic Island profiles
Published: 2017-03-22
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Benthos; Bottles or small containers/Aquaria ( 20 L); Coast and continental shelf; Entire community; Laboratory experiment; Soft-bottom community; Tropical

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Keyword(s):

Benthos; Bottles or small containers/Aquaria ( 20 L); Coast and continental shelf; Entire community; Laboratory experiment; Soft-bottom community; Tropical

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloise; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb

Project(s):

Biological Impacts of Ocean Acidification (BIOACID)

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Date/Time Start: 2014-01-01T00:00:00 * Date/Time End: 2014-01-01T00:00:00

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-03-22.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method	Comment
1	DATE/TIME	Date/Time		Fink, Artur		Geocode
2	Origin	Origin		Fink, Artur		sediment
3	Treatment	Treat		Fink, Artur
4	pH	pH		Fink, Artur		total scale
5	Treatment	Treat		Fink, Artur		light/dark
6	Identification	ID		Fink, Artur		flume
7	Depth, nominal	Depth, nominal		Fink, Artur		depth in mm
8	Oxygen saturation	O2 sat	%	Fink, Artur
9	pH	pH		Fink, Artur		total scale
10	pH, standard error	pH std e	±	Fink, Artur		total scale
11	Alkalinity, total	AT	µmol/kg	Fink, Artur
12	Standard error	Std e	±	Fink, Artur
13	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Fink, Artur
14	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Fink, Artur
15	Carbon, inorganic, dissolved	DIC	µmol/l	Fink, Artur
16	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Fink, Artur
17	Calcite saturation state	Omega Cal		Fink, Artur
18	Standard error	Std e	±	Fink, Artur
19	Aragonite saturation state	Omega Arg		Fink, Artur
20	Standard error	Std e	±	Fink, Artur
21	Saturation index	SI		Fink, Artur		Omega HMC
22	Standard error	Std e	±	Fink, Artur
23	Temperature, water	Temp	°C	Fink, Artur
24	Standard error	Std e	±	Fink, Artur
25	Salinity	Sal		Fink, Artur
26	Standard error	Std e	±	Fink, Artur
27	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
28	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
29	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
30	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
31	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
32	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
33	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
34	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
35	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported

Size:

43395 data points

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