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Fink, Artur (2017): Measurements of microbial processes, dissolution, water and porewater chemistry during experiments on two coral reef sediments: Davies Reef pH profiles. PANGAEA, https://doi.org/10.1594/PANGAEA.873826, In supplement to: Fink, Artur; den Haan, Jost; Chennu, Arjun; Uthicke, Sven; de Beer, Dirk (2017): Ocean Acidification Changes Abiotic Processes but Not Biotic Processes in Coral Reef Sediments. Frontiers in Marine Science, 4, https://doi.org/10.3389/fmars.2017.00073

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Keyword(s):
Benthos; Bottles or small containers/Aquaria ( 20 L); Coast and continental shelf; Entire community; Laboratory experiment; Soft-bottom community; Tropical
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloise; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-03-22.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethodComment
1TreatmentTreatFink, Artur
2Sample code/labelSample labelFink, Arturposition between chamber center and wall
3ReplicateReplicateFink, Artur
4Depth, nominalDepth, nominalFink, Arturdepth in mmm
5pHpHFink, Arturtotal scale
6pHpHFink, Arturtotal scale
7pH, standard errorpH std e±Fink, Artur
8Alkalinity, totalATµmol/kgFink, Artur
9Standard errorStd e±Fink, Artur
10Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmFink, Artur
11Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Fink, Artur
12Carbon, inorganic, dissolvedDICµmol/lFink, Artur
13Carbon, inorganic, dissolved, standard deviationDIC std dev±Fink, Artur
14Calcite saturation stateOmega CalFink, Artur
15Standard errorStd e±Fink, Artur
16Aragonite saturation stateOmega ArgFink, Artur
17Standard errorStd e±Fink, Artur
18High magnesium calcite saturation stateOmega HMCFink, Artur
19Standard errorStd e±Fink, Artur
20Temperature, waterTemp°CFink, Artur
21Standard errorStd e±Fink, Artur
22SalinitySalFink, Artur
23Standard errorStd e±Fink, Artur
24Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
25Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
26Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Size:
19776 data points

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