Citation:

fmars.2017.00073

Name: Measurements of microbial processes, dissolution, water and porewater chemistry during experiments on two coral reef sediments: Davies Reef pH profiles
Published: 2017-03-22
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Benthos; Bottles or small containers/Aquaria ( 20 L); Coast and continental shelf; Entire community; Laboratory experiment; Soft-bottom community; Tropical

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Keyword(s):

Benthos; Bottles or small containers/Aquaria ( 20 L); Coast and continental shelf; Entire community; Laboratory experiment; Soft-bottom community; Tropical

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloise; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb

Project(s):

Biological Impacts of Ocean Acidification (BIOACID)

Ocean Acidification International Coordination Centre (OA-ICC)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-03-22.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method	Comment
1	Treatment	Treat		Fink, Artur
2	Sample code/label	Sample label		Fink, Artur		position between chamber center and wall
3	Replicate	Replicate		Fink, Artur
4	Depth, nominal	Depth, nominal		Fink, Artur		depth in mmm
5	pH	pH		Fink, Artur		total scale
6	pH	pH		Fink, Artur		total scale
7	pH, standard error	pH std e	±	Fink, Artur
8	Alkalinity, total	AT	µmol/kg	Fink, Artur
9	Standard error	Std e	±	Fink, Artur
10	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Fink, Artur
11	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Fink, Artur
12	Carbon, inorganic, dissolved	DIC	µmol/l	Fink, Artur
13	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Fink, Artur
14	Calcite saturation state	Omega Cal		Fink, Artur
15	Standard error	Std e	±	Fink, Artur
16	Aragonite saturation state	Omega Arg		Fink, Artur
17	Standard error	Std e	±	Fink, Artur
18	High magnesium calcite saturation state	Omega HMC		Fink, Artur
19	Standard error	Std e	±	Fink, Artur
20	Temperature, water	Temp	°C	Fink, Artur
21	Standard error	Std e	±	Fink, Artur
22	Salinity	Sal		Fink, Artur
23	Standard error	Std e	±	Fink, Artur
24	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
25	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
26	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
27	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
28	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
29	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
30	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
31	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
32	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported

Size:

19776 data points

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