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Fink, Artur (2017): Measurements of microbial processes, dissolution, water and porewater chemistry during experiments on two coral reef sediments: Davies Reef MPB growth and chamber fluxes. PANGAEA, https://doi.org/10.1594/PANGAEA.873802, In supplement to: Fink, Artur; den Haan, Jost; Chennu, Arjun; Uthicke, Sven; de Beer, Dirk (2017): Ocean Acidification Changes Abiotic Processes but Not Biotic Processes in Coral Reef Sediments. Frontiers in Marine Science, 4, https://doi.org/10.3389/fmars.2017.00073

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Keyword(s):
Benthos; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria ( 20 L); Coast and continental shelf; Entire community; Laboratory experiment; Soft-bottom community; Tropical
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloise; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Coverage:
Date/Time Start: 2015-05-23T00:00:00 * Date/Time End: 2015-05-31T00:00:00
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-03-22.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethodComment
1DATE/TIMEDate/TimeFink, ArturGeocode
2OriginOriginFink, Artursediment
3TreatmentTreatFink, Artur
4Sample code/labelSample labelFink, Arturtimepoint
5TreatmentTreatFink, Artur
6Sample code/labelSample labelFink, Arturchamber
7RatioRatioFink, Arturchl signal
8Chlorophyll aChl aµg/gFink, Artur
9ReplicateReplicateFink, Artur
10Local TimeLocal timeFink, Artur
11Oxygen saturationO2 sat%Fink, Artur
12Temperature, waterTemp°CFink, Artur
13VolumeVollFink, Arturwater
14pHpHFink, Arturtotal scale
15pH, standard errorpH std e±Fink, Arturtotal scale
16Alkalinity, totalATµmol/kgFink, Artur
17Standard errorStd e±Fink, Artur
18Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmFink, Artur
19Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Fink, Artur
20Carbon, inorganic, dissolvedDICµmol/lFink, Artur
21Carbon, inorganic, dissolved, standard deviationDIC std dev±Fink, Artur
22Calcite saturation stateOmega CalFink, Artur
23Standard errorStd e±Fink, Artur
24Aragonite saturation stateOmega ArgFink, Artur
25Standard errorStd e±Fink, Artur
26High magnesium calcite saturation stateOmega HMCFink, Artur
27Standard errorStd e±Fink, Artur
28Temperature, waterTemp°CFink, Artur
29Standard errorStd e±Fink, Artur
30SalinitySalFink, Artur
31Standard errorStd e±Fink, Artur
32Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41Carbon, organic, dissolvedDOCµmol/lFink, Artur
42Phosphate[PO4]3-µmol/lFink, Artur
43Nitrate and Nitrite[NO3]- + [NO2]-µmol/lFink, Artur
44Nitrite[NO2]-µmol/lFink, Artur
45SilicateSi(OH)4µmol/lFink, Artur
Size:
1814 data points

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