Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 Piecyk Agnes 0000-0002-9582-121X Refardt Dominik 0000-0001-9048-144X Chipani Cynthia Hertel Robert 0000-0003-4982-6084 Liesegang Heiko hlieseg@gwdg.de 0000-0003-1792-2047 Bunk Boyke 0000-0002-8420-8161 Overmann Jörg 0000-0003-3909-7201 Roth Olivia oroth@geomar.de 2017 Experiment on bacterial resistance: Gene expression via Fluidigm chip system on Vibrio infected pipefish Syngnathus typhle dataset https://doi.org/10.1594/PANGAEA.873505 2017-03-13T17:07:15 https://doi.org/10.1594/PANGAEA.873510 not specified 4047 CC-BY-3.0 Creative Commons Attribution 3.0 Unported https://creativecommons.org/licenses/by/3.0/ Species Species https://en.wikipedia.org/wiki/Species species Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 Species Group Group group http://purl.obolibrary.org/obo/CHEBI_24433 Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 bacterial group: HS=highly susceptible; IS=intermediate susceptible; R=resistant; C=control Group (bacterial group: HS=highly su...) Strain Strain Strain http://dbpedia.org/resource/Strain Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 Vibrio Strain (Vibrio) Family Family Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 Family Replicate Repl Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 Repl Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 ASH: Histone methyltransferase Δ Ct qPCR (ASH: Histone methyltransferase) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 BROMO: Histone-cacetyltransferase (KAT2) Δ Ct qPCR (BROMO: Histone-cacetyltransfe...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 C1Q-scoA: Complement component 1q Δ Ct qPCR (C1Q-scoA: Complement componen...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 c3: Complement component 3 Δ Ct qPCR (c3: Complement component 3) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 C9A: Complement component 9 Δ Ct qPCR (C9A: Complement component 9) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 calrcul_A: Calreticulin Δ Ct qPCR (calrcul_A: Calreticulin) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 CD45_A: CD45 (leukocyte common antigen) Δ Ct qPCR (CD45_A: CD45 (leukocyte commo...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 CK7: Chemokine 7 Δ Ct qPCR (CK7: Chemokine 7) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 coagfactor2: Coagulation factor II Δ Ct qPCR (coagfactor2: Coagulation fact...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 ddpgly_B: DDP-glycosyltransferase Δ Ct qPCR (ddpgly_B: DDP-glycosyltransfe...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 DNMt1_2: DNA-Methyltransferase 1 Δ Ct qPCR (DNMt1_2: DNA-Methyltransferase 1) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 DnMt3A: DNA-Methyltransferase 3a Δ Ct qPCR (DnMt3A: DNA-Methyltransferase 3a) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 DnMt3A_2: Δ Ct qPCR (DnMt3A_2:) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 DnMt3B: DNA-Methyltransferase 3b Δ Ct qPCR (DnMt3B: DNA-Methyltransferase 3b) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 G6PDH_A: Glucose 6-phosphate dehydrogenase (G6PD) Δ Ct qPCR (G6PDH_A: Glucose 6-phosphate ...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 HDAC1: Histone deacetylase 1-like Δ Ct qPCR (HDAC1: Histone deacetylase 1-...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 HDAC3: Histone deacetylase 3-like Δ Ct qPCR (HDAC3: Histone deacetylase 3-...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 HDAC6: Histone deacetylase 6-like Δ Ct qPCR (HDAC6: Histone deacetylase 6-...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 HIVEP2_A: Human immunodeficiency virus enhancer prot2 Δ Ct qPCR (HIVEP2_A: Human immunodeficie...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 HIVEP3: Human immunodeficiency virus enhancer prot3 Δ Ct qPCR (HIVEP3: Human immunodeficienc...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 hsp1_60kda: Heat shock protein 60 Δ Ct qPCR (hsp1_60kda: Heat shock protei...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 IgM_lc_A: Immunoglobulin light chain Δ Ct qPCR (IgM_lc_A: Immunoglobulin ligh...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 ik_cytokine: Ik cytokine(RED-protein) Δ Ct qPCR (ik_cytokine: Ik cytokine(RED-...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 IL_10: Interleukin 10 Δ Ct qPCR (IL_10: Interleukin 10) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 IL8_A: Interleukin 8 Δ Ct qPCR (IL8_A: Interleukin 8) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 Integ_Bt_A: Integrin-beta 1 Δ Ct qPCR (Integ_Bt_A: Integrin-beta 1) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 intf_A: Interferon induced transmembrane protein 3 Δ Ct qPCR (intf_A: Interferon induced tr...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 Jmjc_PhD: Lysine-specific-demethylase 5B Δ Ct qPCR (Jmjc_PhD: Lysine-specific-dem...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 lectpII: Lectin potein type II Δ Ct qPCR (lectpII: Lectin potein type II) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 lectptI: Lectin protein type I Δ Ct qPCR (lectptI: Lectin protein type I) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 LPS_TNF_A: LPS-induced TNF-_ factor (LITAF) Δ Ct qPCR (LPS_TNF_A: LPS-induced TNF-_ ...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 lympcyt_A : Lymphocyte cytosolic protein 2 Δ Ct qPCR (lympcyt_A : Lymphocyte cytoso...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 lymph_antigen75: Lymphocyte antigen 75 Δ Ct qPCR (lymph_antigen75: Lymphocyte a...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 Lys1: Δ Ct qPCR (Lys1:) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 MYST: Histone-acetyltransferase (HAT1) Δ Ct qPCR (MYST: Histone-acetyltransfera...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 N6admet: N(6)-adenine-specific DNA methyltransferase 2 Δ Ct qPCR (N6admet: N(6)-adenine-specifi...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 No66: Lysine-specific-histone demethylase NO66 Δ Ct qPCR (No66: Lysine-specific-histone...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 nramp: Natural resistance-assoc macrophage protein Δ Ct qPCR (nramp: Natural resistance-ass...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 TAF8: Δ Ct qPCR (TAF8:) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 TAP_A: Tap-binding protein (Tapasin) Δ Ct qPCR (TAP_A: Tap-binding protein (T...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 TPR: Lysine-specific demethylase 6A Δ Ct qPCR (TPR: Lysine-specific demethyl...) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 tranfe_A: Transferrin Δ Ct qPCR (tranfe_A: Transferrin) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 TSPO_B: Translocator protein Δ Ct qPCR (TSPO_B: Translocator protein) Δ threshold cycle, quantitative polymerase chain reaction Δ Ct qPCR quantitative polymerase chain reaction qPCR https://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction High Throughput PCR, Fluidigm BioMark HD Wendling Carolin Charlotte carolin.wendling@env.ethz.ch 0000-0003-4532-7528 Tyroprot: Tyroproteinkinase Δ Ct qPCR (Tyroprot: Tyroproteinkinase) citable geomar author34894 author49604 author54424 author61061 author61062 author61063 author61064 author61065 author61066 license101 method9468 param100337 param129269 param155679 param45544 param7053 param83744 pi49604 term1073521 term242 term41081 term43956 term49384 topotype1