Wendling, Carolin Charlotte; Piecyk, Agnes; Refardt, Dominik; Chipani, Cynthia; Hertel, Robert; Liesegang, Heiko; Bunk, Boyke; Overmann, Jörg; Roth, Olivia (2017): Experiment on bacterial resistance: Gene expression via Fluidigm chip system on Vibrio infected pipefish Syngnathus typhle [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.873505, In supplement to: Wendling, CC et al. (2017): Tripartite species interaction: Eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria. BMC Evolutionary Biology, 17(1), https://doi.org/10.1186/s12862-017-0930-2
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Parameter(s):
# | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
---|---|---|---|---|---|---|
1 | Species | Species | Wendling, Carolin Charlotte | |||
2 | Group | Group | Wendling, Carolin Charlotte | bacterial group: HS=highly susceptible; IS=intermediate susceptible; R=resistant; C=control | ||
3 | Strain | Strain | Wendling, Carolin Charlotte | Vibrio | ||
4 | Family | Family | Wendling, Carolin Charlotte | |||
5 | Replicate | Repl | Wendling, Carolin Charlotte | |||
6 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | ASH: Histone methyltransferase | |
7 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | BROMO: Histone-cacetyltransferase (KAT2) | |
8 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | C1Q-scoA: Complement component 1q | |
9 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | c3: Complement component 3 | |
10 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | C9A: Complement component 9 | |
11 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | calrcul_A: Calreticulin | |
12 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | CD45_A: CD45 (leukocyte common antigen) | |
13 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | CK7: Chemokine 7 | |
14 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | coagfactor2: Coagulation factor II | |
15 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | ddpgly_B: DDP-glycosyltransferase | |
16 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | DNMt1_2: DNA-Methyltransferase 1 | |
17 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | DnMt3A: DNA-Methyltransferase 3a | |
18 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | DnMt3A_2: | |
19 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | DnMt3B: DNA-Methyltransferase 3b | |
20 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | G6PDH_A: Glucose 6-phosphate dehydrogenase (G6PD) | |
21 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | HDAC1: Histone deacetylase 1-like | |
22 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | HDAC3: Histone deacetylase 3-like | |
23 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | HDAC6: Histone deacetylase 6-like | |
24 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | HIVEP2_A: Human immunodeficiency virus enhancer prot2 | |
25 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | HIVEP3: Human immunodeficiency virus enhancer prot3 | |
26 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | hsp1_60kda: Heat shock protein 60 | |
27 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | IgM_lc_A: Immunoglobulin light chain | |
28 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | ik_cytokine: Ik cytokine(RED-protein) | |
29 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | IL_10: Interleukin 10 | |
30 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | IL8_A: Interleukin 8 | |
31 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | Integ_Bt_A: Integrin-beta 1 | |
32 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | intf_A: Interferon induced transmembrane protein 3 | |
33 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | Jmjc_PhD: Lysine-specific-demethylase 5B | |
34 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | lectpII: Lectin potein type II | |
35 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | lectptI: Lectin protein type I | |
36 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | LPS_TNF_A: LPS-induced TNF-_ factor (LITAF) | |
37 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | lympcyt_A : Lymphocyte cytosolic protein 2 | |
38 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | lymph_antigen75: Lymphocyte antigen 75 | |
39 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | Lys1: | |
40 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | MYST: Histone-acetyltransferase (HAT1) | |
41 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | N6admet: N(6)-adenine-specific DNA methyltransferase 2 | |
42 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | No66: Lysine-specific-histone demethylase NO66 | |
43 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | nramp: Natural resistance-assoc macrophage protein | |
44 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | TAF8: | |
45 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | TAP_A: Tap-binding protein (Tapasin) | |
46 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | TPR: Lysine-specific demethylase 6A | |
47 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | tranfe_A: Transferrin | |
48 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | TSPO_B: Translocator protein | |
49 | Δ threshold cycle, quantitative polymerase chain reaction | Δ Ct qPCR | Wendling, Carolin Charlotte | High Throughput PCR, Fluidigm BioMark HD | Tyroprot: Tyroproteinkinase |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
4047 data points
Download Data
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