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Wendling, Carolin Charlotte; Piecyk, Agnes; Refardt, Dominik; Chipani, Cynthia; Hertel, Robert; Liesegang, Heiko; Bunk, Boyke; Overmann, Jörg; Roth, Olivia (2017): Experiment on bacterial resistance: Gene expression via Fluidigm chip system on Vibrio infected pipefish Syngnathus typhle [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.873505, In supplement to: Wendling, CC et al. (2017): Tripartite species interaction: Eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria. BMC Evolutionary Biology, 17(1), https://doi.org/10.1186/s12862-017-0930-2

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Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1SpeciesSpeciesWendling, Carolin Charlotte
2GroupGroupWendling, Carolin Charlottebacterial group: HS=highly susceptible; IS=intermediate susceptible; R=resistant; C=control
3StrainStrainWendling, Carolin CharlotteVibrio
4FamilyFamilyWendling, Carolin Charlotte
5ReplicateReplWendling, Carolin Charlotte
6Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDASH: Histone methyltransferase
7Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDBROMO: Histone-cacetyltransferase (KAT2)
8Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDC1Q-scoA: Complement component 1q
9Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDc3: Complement component 3
10Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDC9A: Complement component 9
11Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDcalrcul_A: Calreticulin
12Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDCD45_A: CD45 (leukocyte common antigen)
13Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDCK7: Chemokine 7
14Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDcoagfactor2: Coagulation factor II
15Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDddpgly_B: DDP-glycosyltransferase
16Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDDNMt1_2: DNA-Methyltransferase 1
17Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDDnMt3A: DNA-Methyltransferase 3a
18Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDDnMt3A_2:
19Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDDnMt3B: DNA-Methyltransferase 3b
20Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDG6PDH_A: Glucose 6-phosphate dehydrogenase (G6PD)
21Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDHDAC1: Histone deacetylase 1-like
22Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDHDAC3: Histone deacetylase 3-like
23Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDHDAC6: Histone deacetylase 6-like
24Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDHIVEP2_A: Human immunodeficiency virus enhancer prot2
25Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDHIVEP3: Human immunodeficiency virus enhancer prot3
26Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDhsp1_60kda: Heat shock protein 60
27Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDIgM_lc_A: Immunoglobulin light chain
28Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDik_cytokine: Ik cytokine(RED-protein)
29Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDIL_10: Interleukin 10
30Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDIL8_A: Interleukin 8
31Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDInteg_Bt_A: Integrin-beta 1
32Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDintf_A: Interferon induced transmembrane protein 3
33Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDJmjc_PhD: Lysine-specific-demethylase 5B
34Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDlectpII: Lectin potein type II
35Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDlectptI: Lectin protein type I
36Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDLPS_TNF_A: LPS-induced TNF-_ factor (LITAF)
37Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDlympcyt_A : Lymphocyte cytosolic protein 2
38Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDlymph_antigen75: Lymphocyte antigen 75
39Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDLys1:
40Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDMYST: Histone-acetyltransferase (HAT1)
41Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDN6admet: N(6)-adenine-specific DNA methyltransferase 2
42Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDNo66: Lysine-specific-histone demethylase NO66
43Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDnramp: Natural resistance-assoc macrophage protein
44Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDTAF8:
45Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDTAP_A: Tap-binding protein (Tapasin)
46Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDTPR: Lysine-specific demethylase 6A
47Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDtranfe_A: Transferrin
48Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDTSPO_B: Translocator protein
49Δ threshold cycle, quantitative polymerase chain reactionΔ Ct qPCRWendling, Carolin CharlotteHigh Throughput PCR, Fluidigm BioMark HDTyroprot: Tyroproteinkinase
Size:
4047 data points

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