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Data Publisher for Earth & Environmental Science

Yates, Kimberly Kaye; Turk, D; Vega-Rodriguez, M; Toro-Farmer, G; L'Esperance, Chris; Melo, N; Ramsewak, D; Dowd, M; Cerdeira Estrada, S; Muller-Karger, Frank E; Herwitz, SR; McGillis, W R (2015): Calcification rate in shallow seagrass ecosystem, lower Florida Keys [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.872310, In supplement to: Turk, D; Yates, Kimberly Kaye; Vega-Rodriguez, M; Toro-Farmer, G; L'Esperance, Chris; Melo, N; Ramsewak, D; Dowd, M; Cerdeira Estrada, S; Muller-Karger, Frank E; Herwitz, SR; McGillis, W R (2015): Community metabolism in shallow coral reef and seagrass ecosystems, lower Florida Keys. Marine Ecology Progress Series, 538, 35-52, https://doi.org/10.3354/meps11385

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Keyword(s):
Benthos; Calcification/Dissolution; Coast and continental shelf; Entire community; Field experiment; Mesocosm or benthocosm; North Atlantic; Rocky-shore community; Temperate
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Coverage:
Median Latitude: 24.575842 * Median Longitude: -81.554514 * South-bound Latitude: 24.561510 * West-bound Longitude: -81.554980 * North-bound Latitude: 24.600850 * East-bound Longitude: -81.553710
Date/Time Start: 2012-10-16T07:00:00 * Date/Time End: 2012-10-21T11:00:00
Minimum DEPTH, water: 3.0 m * Maximum DEPTH, water: 5.2 m
Event(s):
Reef_Sugarloaf_Key  * Latitude: 24.561630 * Longitude: -81.554930 * Date/Time Start: 2012-10-18T00:00:00 * Date/Time End: 2012-10-21T00:00:00 * Method/Device: Experiment (EXP)
Seagrass_Sugarloaf_Key  * Latitude: 24.599820 * Longitude: -81.554380 * Date/Time Start: 2012-10-15T00:00:00 * Date/Time End: 2012-10-17T00:00:00 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2017-02-14.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEventYates, Kimberly Kaye
DescriptionDescriptionYates, Kimberly Kayesystem
DATE/TIMEDate/TimeYates, Kimberly KayeGeocode
DescriptionDescriptionYates, Kimberly Kayestation
IdentificationIDYates, Kimberly Kayesystem
DEPTH, waterDepth watermYates, Kimberly KayeGeocode
LATITUDELatitudeYates, Kimberly KayeGeocode
LONGITUDELongitudeYates, Kimberly KayeGeocode
IdentificationIDYates, Kimberly Kayetotal alkalinity (bottle#)
10 pHpHYates, Kimberly KayeSpectrophotometrictotal scale
11 Quality flagQFYates, Kimberly KayeSpectrophotometricpH
12 SalinitySalYates, Kimberly Kaye
13 Quality flagQFYates, Kimberly Kayesalinity
14 Temperature, waterTemp°CYates, Kimberly Kaye
15 Quality flagQFYates, Kimberly Kayewater temperature
16 OxygenO2µmol/lYates, Kimberly Kayedissolved
17 Quality flagQFYates, Kimberly Kayedissolved oxygen
18 Temperature, airTTT°CYates, Kimberly KayeThermometer
19 Quality flagQFYates, Kimberly KayeAir temperature
20 DescriptionDescriptionYates, Kimberly KayeWeather, Sea State
21 Alkalinity, totalATµmol/kgYates, Kimberly KayePotentiometric titration
22 Quality flagQFYates, Kimberly KayePotentiometric titrationAlkalinity, total
23 Carbon, inorganic, dissolvedDICµmol/kgYates, Kimberly KayeCoulometric titration
24 Quality flagQFYates, Kimberly KayeCoulometric titrationCarbon, inorganic, dissolved
25 Wind speed descriptionff descrYates, Kimberly Kaye
26 Calcification rate of calcium carbonateNC CaCO3g/m2/hYates, Kimberly Kaye
27 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
29 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Size:
1230 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Description
(system)

Date/Time

Description
(station)

ID
(system)

Depth water [m]

Latitude

Longitude

ID
(total alkalinity (bottle#))
10 
pH
(total scale, Spectrophotometric)
11 
QF
(pH, Spectrophotometric)
12 
Sal
13 
QF
(salinity)
14 
Temp [°C]
15 
QF
(water temperature)
16 
O2 [µmol/l]
(dissolved)
17 
QF
(dissolved oxygen)
18 
TTT [°C]
(Thermometer)
19 
QF
(Air temperature)
20 
Description
(Weather, Sea State)
21 
AT [µmol/kg]
(Potentiometric titration)
22 
QF
(Alkalinity, total, Potentiome...)
23 
DIC [µmol/kg]
(Coulometric titration)
24 
QF
(Carbon, inorganic, dissolved,...)
25 
ff descr
26 
NC CaCO3 [g/m2/h]
27 
CSC flag
(Calculated using seacarb afte...)
28 
pH
(total scale, Calculated using...)
29 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
30 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
31 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
32 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
33 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
34 
Omega Arg
(Calculated using seacarb afte...)
35 
Omega Cal
(Calculated using seacarb afte...)
Seagrass_Sugarloaf_Key Ambient seawater, chamber closed at 8302012-10-16T07:00:00Intermediate SeagrassChamber 13.024.60082-81.5537917.925236.7227.62170.63225.92ptly cldy, lt chop2219.221969.827 ENE157.9114.51549.58551.291777.46177.832.824.24
Seagrass_Sugarloaf_KeyChamber closed2012-10-16T11:23:00Intermediate SeagrassChamber 13.024.60082-81.5537937.963236.6227.82183.13227.12ptly cldy, lt chop2205.721939.628 NNE0.178182545157.9413.17501.10502.651738.63187.802.994.48
Seagrass_Sugarloaf_KeyChamber closed2012-10-16T15:07:00Intermediate SeagrassChamber 13.024.60082-81.5537958.086236.6228.22253.44227.82ptly cldy, lt chop2180.821850.525 NNE0.204167500158.059.46363.45364.571614.11226.923.625.42
Seagrass_Sugarloaf_KeyChamber closed2012-10-16T19:00:00Intermediate SeagrassChamber 13.024.60082-81.5537978.095236.6228.22269.69227.52ptly cldy, calm2162.521835.224 ESE0.150045865158.059.43362.08363.191601.53224.243.575.35
Seagrass_Sugarloaf_KeyChamber closed2012-10-16T23:00:00Intermediate SeagrassChamber 13.024.60082-81.5537998.031236.6228.22227.50226.92clear, calm2167.721874.723 NNE-0.042131105157.9911.19429.66430.981660.39203.123.244.85
Seagrass_Sugarloaf_KeyChamber closed2012-10-17T03:00:00Intermediate SeagrassChamber 13.024.60082-81.55379117.950236.6228.22188.13226.82clear, calm2175.421919.524 ENE-0.063648356157.9213.59522.06523.661725.39180.512.884.31
Seagrass_Sugarloaf_KeyChamber closed2012-10-17T07:00:00Intermediate SeagrassChamber 13.024.60082-81.55379137.865236.6228.22149.38226.32clear, calm2185.321974.324 ENE-0.080977134157.8317.45670.22672.291803.26153.582.453.67
Seagrass_Sugarloaf_KeyChamber closed2012-10-17T11:00:00Intermediate SeagrassChamber 13.024.60082-81.5537915, 167.864236.6228.32148.44228.12ptly cldy, lt chop2183.421978.728 ESE0.015439859157.8218.08695.90698.041810.84149.792.393.58
Seagrass_Sugarloaf_KeyAmbient seawater, chamber closed at 9102012-10-16T07:00:00Intermediate SeagrassChamber 23.024.60085-81.5537127.943236.8227.62167.50225.92ptly cldy, lt chop2218.821967.627 ENE157.9114.40545.68547.371774.36178.842.844.26
Seagrass_Sugarloaf_KeyChamber closed2012-10-16T11:00:00Intermediate SeagrassChamber 23.024.60085-81.5537147.970236.7227.62184.06227.12ptly cldy, lt chop2210.221936.128 NNE0.113795047157.9512.69480.66482.151730.65192.763.064.59
Seagrass_Sugarloaf_KeyChamber closed2012-10-16T15:00:00Intermediate SeagrassChamber 23.024.60085-81.5537168.077236.7228.02235.00227.82ptly cldy, lt chop2188.821867.825 NNE0.175176700158.039.96380.77381.941636.58221.263.525.28
Seagrass_Sugarloaf_KeyChamber closed2012-10-16T19:00:00Intermediate SeagrassChamber 23.024.60085-81.5537188.066236.7228.12243.13227.52ptly cldy, calm2177.021864.424 ESE0.097074008158.0210.26393.46394.681638.59215.553.435.14
Seagrass_Sugarloaf_KeyChamber closed2012-10-16T23:00:00Intermediate SeagrassChamber 23.024.60085-81.55371108.025236.7228.12206.88226.92clear, calm2185.121901.723 NNE-0.066769178157.9711.93457.38458.791692.05197.723.154.72
Seagrass_Sugarloaf_KeyChamber closed2012-10-17T03:00:00Intermediate SeagrassChamber 23.024.60085-81.55371127.935236.7228.12172.50226.82clear, calm2196.521948.624 ENE-0.093296170157.9014.45553.77555.481757.89176.262.804.20
Seagrass_Sugarloaf_KeyChamber closed2012-10-17T07:00:00Intermediate SeagrassChamber 23.024.60085-81.55371147.861236.7228.02137.19226.32clear, calm2214.822003.924 ENE-0.150045865157.8317.88683.55685.661831.64154.382.463.68
Seagrass_Sugarloaf_KeyChamber closed2012-10-17T11:00:00Intermediate SeagrassChamber 23.024.60085-81.5537117, 187.844236.7228.12132.50228.12ptly cldy, lt chop2215.722009.828 ESE-0.007473549157.8218.42706.06708.231839.93151.452.413.61
Reef_Sugarloaf_Key Ambient seawater, chamber closed at 9002012-10-19T07:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.55498198.009236.1228.02175.63227.12ptly cldy, chop2298.021992.428S158.0011.70446.22447.601763.97216.733.465.20
Reef_Sugarloaf_KeyChamber closed2012-10-19T11:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.55498218.014236.2228.12177.50227.92ptly cldy, chop2279.121985.824.3 WNW0.169077657157.9812.25468.33469.781765.43208.123.324.99
Reef_Sugarloaf_KeyChamber closed2012-10-19T15:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.55498238.093236.2228.42243.13228.62ptly cldy, calm2248.921909.624.3 SW0.134299025158.059.64371.23372.371663.82236.143.785.66
Reef_Sugarloaf_KeyChamber closed2012-10-19T19:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.55498258.046236.1228.42214.06228.12ptly cldy, calm2238.921930.825 NW0.044587990158.0011.03424.50425.811703.68216.093.465.18
Reef_Sugarloaf_KeyAmbient seawater, equilibraton turned on at 2039 chamber opened at 22002012-10-19T23:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.55498278.056236.1228.22189.06227.62ptly cldy, lt chop2300.221981.323 NNW158.0211.05423.43424.731744.89225.363.605.40
Reef_Sugarloaf_KeyAmbient seawater2012-10-20T03:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.554989999999
Reef_Sugarloaf_KeyChamber closed at 7152012-10-20T07:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.55498298.012236.1228.32165.94227.02ptly cldy, lt chop2297.322001.124 NNW157.9812.29471.88473.331777.98210.833.375.06
Reef_Sugarloaf_KeyChamber closed2012-10-20T11:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.5549831, 327.965236.1228.42145.31227.42ptly cldy, lt chop2279.322012.929 NNW0.079946265157.9314.02539.43541.091807.48191.403.064.59
Reef_Sugarloaf_KeyChamber closed2012-10-20T15:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.55498358.054236.1228.62210.63227.82ptly cldy, lt chop2240.321943.627 NNW0.174205275157.9811.70452.55453.931722.88209.023.355.02
Reef_Sugarloaf_KeyChamber closed2012-10-20T19:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.55498378.013236.1228.72186.25227.42clear, calm2254.521961.325 N-0.063716237157.9712.08468.09469.521741.81207.413.334.98
Reef_Sugarloaf_KeyChamber closed2012-10-20T23:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.55498397.871236.1228.6290.31227.22clear, calm2272.622051.926 N-0.080481321157.8417.71684.95687.051871.27162.912.613.91
Reef_Sugarloaf_KeyAmbient seawater, chamber opened at 23152012-10-21T03:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.554989999999
Reef_Sugarloaf_KeyChamber closed at 7152012-10-21T07:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.55498418.036236.1228.42178.75227.12clear, calm2312.422001.528 NNE158.0011.64447.92449.301769.05220.813.545.30
Reef_Sugarloaf_KeyChamber closed2012-10-21T11:00:00Shallow Patch Reef 1Chamber 15.224.56151-81.5549843, 447.991236.1228.52154.38227.12cldy, chop2291.022011.1213 ENE0.095284534157.9513.27511.76513.331797.48200.353.214.81
Reef_Sugarloaf_KeyAmbient seawater, chamber closed at 9002012-10-19T07:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.55492208.043236.3228.02182.50227.12ptly cldy, chop2298.921994.328S157.9911.82451.05452.441766.58215.913.445.17
Reef_Sugarloaf_KeyChamber closed2012-10-19T11:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.55492228.013236.3228.12178.75227.92ptly cldy, chop2271.521989.324.3 WNW0.119833831157.9612.87492.23493.751775.70200.733.204.80
Reef_Sugarloaf_KeyChamber closed2012-10-19T15:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.55492248.101236.3228.42259.38228.62ptly cldy, calm2239.921901.224.3 SW0.138360772158.059.61370.05371.191656.36235.243.765.63
Reef_Sugarloaf_KeyChamber closed2012-10-19T19:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.55492268.015236.3228.32191.56228.12ptly cldy, calm2247.521964.725 NW-0.033155778157.9612.60484.24485.731751.84200.263.204.79
Reef_Sugarloaf_KeyAmbient seawater, equilibraton turned on at 2039 chamber opened at 22002012-10-19T23:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.55492288.048236.2228.22188.13227.62ptly cldy, lt chop2299.921990.023 NNW158.0011.55442.66444.021758.96219.493.515.26
Reef_Sugarloaf_KeyAmbient seawater2012-10-20T03:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.554929999999
Reef_Sugarloaf_KeyChamber closed at 7152012-10-20T07:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.55492308.013236.2228.32168.44227.02ptly cldy, lt chop2291.222007.324 NNW157.9613.00499.32500.851791.59202.723.244.86
Reef_Sugarloaf_KeyChamber closed2012-10-20T11:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.5549233, 347.997236.2228.42172.81227.42ptly cldy, lt chop2268.321984.129 NNW0.100606107157.9612.74490.56492.071769.29202.073.234.84
Reef_Sugarloaf_KeyChamber closed2012-10-20T15:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.55492368.073236.2228.62228.13227.82ptly cldy, lt chop2265.821934.927 NNW0.010599337158.0310.22395.24396.451693.10231.593.715.55
Reef_Sugarloaf_KeyChamber closed2012-10-20T19:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.55492388.004236.2228.62171.25227.42clear, calm2287.621992.925 N-0.095394036157.9712.36478.06479.521771.04209.503.365.02
Reef_Sugarloaf_KeyChamber closed2012-10-20T23:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.55492407.909236.2228.52103.75227.22clear, calm2300.922059.726 N-0.058296356157.8716.28628.35630.271867.02176.402.824.23
Reef_Sugarloaf_KeyAmbient seawater, chamber opened at 23152012-10-21T03:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.554929999999
Reef_Sugarloaf_KeyChamber closed at 7152012-10-21T07:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.55492428.027236.2228.42173.44227.12clear, calm2311.722007.028 NNE157.9912.00462.07463.491778.28216.723.475.19
Reef_Sugarloaf_KeyChamber closed2012-10-21T11:00:00Shallow Patch Reef 2Chamber 25.224.56161-81.5549245, 467.987236.2228.52164.69227.12cldy, chop2285.522008.5213 ENE0.114621760157.9413.42517.94519.531796.86198.223.174.75