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Milner, Sara; Langer, Gerald; Grelaud, Michaël; Ziveri, Patrizia (2016): Ocean warming modulates the effects of acidification on Emiliania huxleyi calcification and sinking [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.869470, Supplement to: Milner, S et al. (2016): Ocean warming modulates the effects of acidification on Emiliania huxleyi calcification and sinking. Limnology and Oceanography, 61(4), 1322-1336, https://doi.org/10.1002/lno.10292

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Abstract:
Ongoing ocean warming and acidification are tied to the rapid accumulation of human-induced carbon dioxide (CO2) in the atmosphere and subsequent uptake of heat and CO2 by the surface ocean. These processes are expected to drive large changes in marine ecosystems. While numerous studies have examined the effects of ocean acidification on coccolithophores, less is known on their combined effect. In this study, we investigate temperature modulation of the carbonate chemistry sensitivity of the coccolithophore Emiliania huxleyi (RCC1827 from the Western Mediterranean) in a culture experiment. We analyzed the responses of coccolith morphology, particulate inorganic and organic carbon production, and sinking rate of individual cells. E. huxleyi was exposed to three CO2 levels (ca. 400 µatm, 900 µatm, and 1400 µatm) at 15°C and 20°C. Temperature adds to the negative effect of increasing pCO2 on coccolith morphology, suggesting that a significant number of E. huxleyi strains might suffer from a temperature increase, hampering their evolutionary success. Temperature amplified the positive effect of increasing pCO2 on organic carbon production, while modulating the response of calcification rates, indicating that the response to increasing pCO2 must be taken with caution depending on the temperature range studied. Sinking rates were positively correlated with temperature, whereas pCO2 did not have any effect. The combined effect of carbonate chemistry and temperature on the E. huxleyi ratio between particulate inorganic carbon and particulate organic carbon (PIC/POC) might also lower the sinking rate of aggregates. In conclusion, in a warmer and more acidified ocean, individual coccolithophore cells might sink faster, while aggregates might sink slower.
Keyword(s):
Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Chromista; Emiliania huxleyi; Growth/Morphology; Haptophyta; Laboratory experiment; Laboratory strains; Mediterranean Sea; Pelagos; Phytoplankton; Primary production/Photosynthesis; Single species; Temperature
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-12-13.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeZiveri, Patriziastudy
SpeciesSpeciesZiveri, Patrizia
Registration number of speciesReg spec noZiveri, Patrizia
Uniform resource locator/link to referenceURL refZiveri, PatriziaWoRMS Aphia ID
TreatmentTreatZiveri, Patrizia
Coccoliths, normalCocco norm%Ziveri, Patrizia
Coccoliths, normal, standard deviationCocco norm std dev±Ziveri, Patrizia
Malformation rateMalformation%Ziveri, PatriziaCoccoliths
Malformation rate, standard deviationMalformation std dev±Ziveri, PatriziaCoccoliths
10 Growth rateµ1/dayZiveri, Patrizia
11 Growth rate, standard deviationµ std dev±Ziveri, Patrizia
12 Carbon, inorganic, particulate, per cellPIC/cellpg/#Ziveri, PatriziaElement analyzer CHN (Hewlett-Packard)
13 Particulate inorganic carbon per cell, standard deviationPIC/cell std dev±Ziveri, PatriziaElement analyzer CHN (Hewlett-Packard)
14 Carbon, organic, particulate, per cellPOC/cellpg/#Ziveri, PatriziaElement analyzer CHN (Hewlett-Packard)
15 Particulate organic carbon content per cell, standard deviationPOC cont/cell std dev±Ziveri, PatriziaElement analyzer CHN (Hewlett-Packard)
16 Particulate inorganic carbon production per cellPIC prod/cellpg/#/dayZiveri, PatriziaElement analyzer CHN (Hewlett-Packard)
17 Particulate inorganic carbon, production, standard deviationPIC prod std dev±Ziveri, PatriziaElement analyzer CHN (Hewlett-Packard)
18 Particulate organic carbon production per cellPOC prod/cellpg/#/dayZiveri, PatriziaElement analyzer CHN (Hewlett-Packard)
19 Particulate organic carbon, production, standard deviationPOC prod std dev±Ziveri, PatriziaElement analyzer CHN (Hewlett-Packard)
20 Particulate inorganic carbon/particulate organic carbon ratioPIC/POCZiveri, PatriziaElement analyzer CHN (Hewlett-Packard)
21 Particulate inorganic carbon/particulate organic carbon ratio, standard deviationPIC/POC ratio std dev±Ziveri, PatriziaElement analyzer CHN (Hewlett-Packard)
22 Coccosphere, diameterCoccosp diamµmZiveri, Patrizia
23 Coccosphere, diameter, standard deviationCoccosp diam std dev±Ziveri, Patrizia
24 CoccolithsCocco#Ziveri, Patriziaper coccosphere
25 Coccoliths, standard deviationCocco std dev±Ziveri, Patriziaper coccosphere
26 Carbon, inorganic, particulate, per cellPIC/cellpg/#Ziveri, PatriziaScanning electron microscope (SEM)
27 Particulate inorganic carbon per cell, standard deviationPIC/cell std dev±Ziveri, PatriziaScanning electron microscope (SEM)
28 Carbon, organic, particulate, per cellPOC/cellpg/#Ziveri, PatriziaScanning electron microscope (SEM)
29 Particulate organic carbon content per cell, standard deviationPOC cont/cell std dev±Ziveri, PatriziaScanning electron microscope (SEM)
30 Particulate inorganic carbon/particulate organic carbon ratioPIC/POCZiveri, PatriziaScanning electron microscope (SEM)
31 Particulate inorganic carbon/particulate organic carbon ratio, standard deviationPIC/POC ratio std dev±Ziveri, PatriziaScanning electron microscope (SEM)
32 DensityDensitypg/µm3Ziveri, Patriziaoverall
33 Density, standard deviationDensity std dev±Ziveri, Patriziaoverall
34 Sinking velocitySinking Vnm/sZiveri, Patrizia
35 Sinking velocity, standard deviationSinking V std dev±Ziveri, Patrizia
36 Sinking velocitySinking Vm/dayZiveri, Patrizia
37 Sinking velocity, standard deviationSinking V std dev±Ziveri, Patrizia
38 SalinitySalZiveri, Patrizia
39 Temperature, waterTemp°CZiveri, Patrizia
40 Alkalinity, totalATµmol/kgZiveri, Patriziabeginning
41 Carbon, inorganic, dissolvedDICµmol/kgZiveri, Patriziabeginning
42 pHpHZiveri, Patriziabeginning, NBS scale
43 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmZiveri, Patriziabeginning
44 Bicarbonate ion[HCO3]-µmol/kgZiveri, Patriziabeginning
45 Carbonate ion[CO3]2-µmol/kgZiveri, Patriziabeginning
46 Calcite saturation stateOmega CalZiveri, Patriziabeginning
47 Alkalinity, totalATµmol/kgZiveri, Patriziaend
48 Alkalinity, total, standard deviationAT std dev±Ziveri, Patriziaend
49 Carbon, inorganic, dissolvedDICµmol/kgZiveri, Patriziaend
50 Carbon, inorganic, dissolved, standard deviationDIC std dev±Ziveri, Patriziaend
51 pHpHZiveri, Patriziaend, NBS scale
52 pH, standard deviationpH std dev±Ziveri, Patriziaend, NBS scale
53 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmZiveri, Patriziaend
54 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Ziveri, Patriziaend
55 Bicarbonate ion[HCO3]-µmol/kgZiveri, Patriziaend
56 Bicarbonate ion, standard deviation[HCO3]- std dev±Ziveri, Patriziaend
57 Carbonate ion[CO3]2-µmol/kgZiveri, Patriziaend
58 Carbonate ion, standard deviation[CO3]2- std dev±Ziveri, Patriziaend
59 Calcite saturation stateOmega CalZiveri, Patriziaend
60 Calcite saturation state, standard deviationOmega Cal std dev±Ziveri, Patriziaend
61 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
62 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)beginning, total scale
63 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)beginning
64 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)beginning
65 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)beginning
66 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)beginning
67 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)beginning
68 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)beginning
69 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)beginning
70 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)beginning
71 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)end, total scale
72 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)end
73 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)end
74 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)end
75 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)end
76 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)end
77 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)end
78 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)end
79 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)end
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
474 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Treat

Cocco norm [%]

Cocco norm std dev [±]

Malformation [%]
(Coccoliths)

Malformation std dev [±]
(Coccoliths)
10 
µ [1/day]
11 
µ std dev [±]
12 
PIC/cell [pg/#]
(Element analyzer CHN (Hewlett...)
13 
PIC/cell std dev [±]
(Element analyzer CHN (Hewlett...)
14 
POC/cell [pg/#]
(Element analyzer CHN (Hewlett...)
15 
POC cont/cell std dev [±]
(Element analyzer CHN (Hewlett...)
16 
PIC prod/cell [pg/#/day]
(Element analyzer CHN (Hewlett...)
17 
PIC prod std dev [±]
(Element analyzer CHN (Hewlett...)
18 
POC prod/cell [pg/#/day]
(Element analyzer CHN (Hewlett...)
19 
POC prod std dev [±]
(Element analyzer CHN (Hewlett...)
20 
PIC/POC
(Element analyzer CHN (Hewlett...)
21 
PIC/POC ratio std dev [±]
(Element analyzer CHN (Hewlett...)
22 
Coccosp diam [µm]
23 
Coccosp diam std dev [±]
24 
Cocco [#]
(per coccosphere)
25 
Cocco std dev [±]
(per coccosphere)
26 
PIC/cell [pg/#]
(Scanning electron microscope ...)
27 
PIC/cell std dev [±]
(Scanning electron microscope ...)
28 
POC/cell [pg/#]
(Scanning electron microscope ...)
29 
POC cont/cell std dev [±]
(Scanning electron microscope ...)
30 
PIC/POC
(Scanning electron microscope ...)
31 
PIC/POC ratio std dev [±]
(Scanning electron microscope ...)
32 
Density [pg/µm3]
(overall)
33 
Density std dev [±]
(overall)
34 
Sinking V [nm/s]
35 
Sinking V std dev [±]
36 
Sinking V [m/day]
37 
Sinking V std dev [±]
38 
Sal
39 
Temp [°C]
40 
AT [µmol/kg]
(beginning)
41 
DIC [µmol/kg]
(beginning)
42 
pH
(beginning, NBS scale)
43 
pCO2water_SST_wet [µatm]
(beginning)
44 
[HCO3]- [µmol/kg]
(beginning)
45 
[CO3]2- [µmol/kg]
(beginning)
46 
Omega Cal
(beginning)
47 
AT [µmol/kg]
(end)
48 
AT std dev [±]
(end)
49 
DIC [µmol/kg]
(end)
50 
DIC std dev [±]
(end)
51 
pH
(end, NBS scale)
52 
pH std dev [±]
(end, NBS scale)
53 
pCO2water_SST_wet [µatm]
(end)
54 
pCO2 std dev [±]
(end)
55 
[HCO3]- [µmol/kg]
(end)
56 
[HCO3]- std dev [±]
(end)
57 
[CO3]2- [µmol/kg]
(end)
58 
[CO3]2- std dev [±]
(end)
59 
Omega Cal
(end)
60 
Omega Cal std dev [±]
(end)
61 
CSC flag
(Calculated using seacarb afte...)
62 
pH
(beginning, total scale, Calcu...)
63 
CO2 [µmol/kg]
(beginning, Calculated using s...)
64 
fCO2water_SST_wet [µatm]
(beginning, Calculated using s...)
65 
pCO2water_SST_wet [µatm]
(beginning, Calculated using s...)
66 
[HCO3]- [µmol/kg]
(beginning, Calculated using s...)
67 
[CO3]2- [µmol/kg]
(beginning, Calculated using s...)
68 
DIC [µmol/kg]
(beginning, Calculated using s...)
69 
Omega Arg
(beginning, Calculated using s...)
70 
Omega Cal
(beginning, Calculated using s...)
71 
pH
(end, total scale, Calculated ...)
72 
CO2 [µmol/kg]
(end, Calculated using seacarb...)
73 
fCO2water_SST_wet [µatm]
(end, Calculated using seacarb...)
74 
pCO2water_SST_wet [µatm]
(end, Calculated using seacarb...)
75 
[HCO3]- [µmol/kg]
(end, Calculated using seacarb...)
76 
[CO3]2- [µmol/kg]
(end, Calculated using seacarb...)
77 
DIC [µmol/kg]
(end, Calculated using seacarb...)
78 
Omega Arg
(end, Calculated using seacarb...)
79 
Omega Cal
(end, Calculated using seacarb...)
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgControl46.60.753.40.70.790.0112.290.1212.840.149.510.2810.160.140.960.015.980.031302.700.3813.910.160.190.031.150.0220202920.170.0330.515240121448.2038719671634.02215101961128.220.00338517921215613.80.0268.0815.20395.64397.072011.44161.122187.762.513.958.1013.26345.06346.311836.93154.072004.262.403.78
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgOcean acidification at 900 µatm32.11.067.91.00.770.0112.340.2214.870.289.540.3111.490.390.830.016.100.051403.330.5815.160.080.220.041.170.0224484030.210.0330.515226821567.868792047751.82092111946127.970.0062871834128902.20.0267.7434.43896.20899.452081.7276.192192.331.191.877.8524.04625.76628.031872.7588.311985.101.382.17
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgOcean acidification at 1400 µatm23.40.676.60.60.690.019.630.2016.070.866.610.1911.040.700.600.036.170.101503.150.2213.420.220.230.011.160.0122881560.200.0130.515219721407.6813602039501.22077101988157.800.02935411891156021.50.1267.5651.921351.681356.582073.6950.132175.740.781.237.6836.55951.36954.811924.4761.342022.350.961.51
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgOcean warming at 20 °C38.12.261.92.21.040.039.810.5010.760.238.781.9611.150.160.910.065.660.051303.840.459.820.230.390.041.230.0234323730.300.0330.520239521178.1940919251784.42252181990228.170.014111418132316424.00.0268.0613.85417.17418.591958.80181.232153.882.884.488.0413.73413.36414.761853.47163.762030.962.604.05
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgGreeenhouse at 900 µatm CO2 and 20 °C30.91.069.11.01.010.0510.300.1012.500.6410.302.0312.401.500.800.005.950.081404.190.4110.640.210.390.031.220.0235643210.310.0330.520225521207.878992002892.22123171973197.920.01752211855199412.30.0267.7430.09906.19909.272035.7890.122155.991.432.237.7924.92750.51753.061891.8393.972010.721.492.32
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgGreeenhouse at 1400 µatm CO2 and 20 °C19.81.080.21.00.920.0311.150.4315.100.9911.310.7213.951.130.740.046.040.121504.360.9711.280.150.390.081.220.0336487450.320.0630.520218621197.6614652016551.42047141942207.780.021015521840216931.70.1267.5349.141479.861484.902049.2355.922154.290.891.387.6534.181029.461032.961879.5167.621981.311.071.67