Horn, Hannes; Slaby, Beate M; Jahn, Martin T; Bayer, Kristina; Moitinho-Silva, Lucas; Förster, Frank; Abdelmohsen, Usama Ramadan; Hentschel, Ute (2016): Individual codes, GenBank accession numbers and GenBank accession links for marine sponge-associated microbial metagenomes [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.869129, Supplement to: Horn, H et al. (2016): An Enrichment of CRISPR and Other Defense-Related Features in Marine Sponge-Associated Microbial Metagenomes. Frontiers in Microbiology, 7:1751, https://doi.org/10.3389/fmicb.2016.01751
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Abstract:
Dataset contains metainformation to the samples used in the given pulication: links to Bioprojects, Biosamples, metagenome assemblies and raw data.
Coverage:
Median Latitude: 41.036750 * Median Longitude: 18.926695 * South-bound Latitude: 36.770000 * West-bound Longitude: 13.333390 * North-bound Latitude: 45.303500 * East-bound Longitude: 24.520000
Date/Time Start: 2013-05-07T00:00:00 * Date/Time End: 2013-05-29T00:00:00
Minimum Elevation: -7.0 m * Maximum Elevation: -5.0 m
Event(s):
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Event label | Event | Horn, Hannes | |||
| 2 | Date/Time of event | Date/Time | Horn, Hannes | |||
| 3 | Latitude of event | Latitude | Horn, Hannes | |||
| 4 | Longitude of event | Longitude | Horn, Hannes | |||
| 5 | Depth, top/min | Depth top | m | Horn, Hannes | ||
| 6 | Depth, bottom/max | Depth bot | m | Horn, Hannes | ||
| 7 | Species | Species | Horn, Hannes | |||
| 8 | Sample type | Samp type | Horn, Hannes | |||
| 9 | Project | Project | Horn, Hannes | Bioproject ID GenBank | ||
| 10 | Sample ID | Sample ID | Horn, Hannes | BioSample ID | ||
| 11 | Sequence identifier | SeqID | Horn, Hannes | Sequence Read Archive, * GOLD Study ID | ||
| 12 | Accession number | Access No | Horn, Hannes | WGS, GenBank | ||
| 13 | Accession number, link | Access URL | Horn, Hannes | GenBank | ||
| 14 | Area/locality | Area | Horn, Hannes |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
39 data points
Data
| 1 Event | 2 Date/Time | 3 Latitude | 4 Longitude | 5 Depth top [m] | 6 Depth bot [m] | 7 Species | 8 Samp type | 9 Project | 10 Sample ID | 11 SeqID | 12 Access No | 13 Access URL | 14 Area |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Piran_052013 | 2013-05-07T00:00 | 45.3035 | 13.3334 | 5 | 5 | Aplysina aerophoba | sponge metagenome | PRJNA318959 | SAMN05860141 | Gs0099546* | MKWU00000000 | ncbi.nlm.nih.gov | Piran, Slovenia |
| Milos_052013 | 2013-05-29T00:00 | 36.7700 | 24.5200 | 5 | 7 | Petrosia ficiformis | sponge metagenome | PRJNA318959 | SAMN04870510 | SRP074318 | LXNJ00000000 | ncbi.nlm.nih.gov | Milos, Greece |
| Milos_052013 | 2013-05-29T00:00 | 36.7700 | 24.5200 | 5 | 7 | Sacrotragus foetidus | sponge metagenome | PRJNA318959 | SAMN04870527 | SRP074318 | LXNI00000000 | ncbi.nlm.nih.gov | Milos, Greece |
| Milos_052013 | 2013-05-29T00:00 | 36.7700 | 24.5200 | 5 | 7 | seawater metagenome (control) | PRJNA318959 | SAMN04870528 | SRP074318 | LXNH00000000 | ncbi.nlm.nih.gov | Milos, Greece |