Citation:

j.aquatox.2015.07.004

Name: Evaluation of the threat of marine CO2 leakage-associated acidification on the toxicity of sediment metals to juvenile bivalves
Published: 2015
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Inorganic toxins; Laboratory experiment; Mollusca; Mortality/Survival; North Atlantic; Ruditapes philippinarum; Single species; Temperate

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Abstract:

The effects of the acidification associated with CO2 leakage from sub-seabed geological storage was studied by the evaluation of the short-term effects of CO2-induced acidification on juveniles of the bivalve Ruditapes philippinarum. Laboratory scale experiments were performed using a CO2-bubbling system designed to conduct ecotoxicological assays. The organisms were exposed for 10 days to elutriates of sediments collected in different littoral areas that were subjected to various pH treatments (pH 7.1; pH 6.6; pH 6.1). The acute pH-associated effects on the bivalves were observed, and the dissolved metals in the elutriates were measured. The median toxic effect pH was calculated, which ranged from 6.33 and 6.45. The amount of dissolved Zn in the sediment elutriates increased in parallel with the pH reductions and was correlated with the proton concentrations. The pH, the pCO2 and the dissolved metal concentrations (Zn and Fe) were linked with the mortality of the exposed bivalves.

Keyword(s):

Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Inorganic toxins; Laboratory experiment; Mollusca; Mortality/Survival; North Atlantic; Ruditapes philippinarum; Single species; Temperate

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse (2015): seacarb: seawater carbonate chemistry with R. R package version 3.0.8. https://cran.r-project.org/package=seacarb

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-08-22.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		Basallote, M Dolores		study
2	Species	Species		Basallote, M Dolores
3	Registration number of species	Reg spec no		Basallote, M Dolores
4	Uniform resource locator/link to reference	URL ref		Basallote, M Dolores		WoRMS Aphia ID
5	Treatment	Treat		Basallote, M Dolores
6	Site	Site		Basallote, M Dolores		sediment site
7	Mortality	Mortality	%	Basallote, M Dolores
8	Mortality, standard deviation	Mortality std dev	±	Basallote, M Dolores
9	Time in hours	Time	h	Basallote, M Dolores
10	Iron	Fe	µg/l	Basallote, M Dolores		dissolved
11	Iron, standard deviation	Fe std dev	±	Basallote, M Dolores		dissolved
12	Arsenic	As	µg/l	Basallote, M Dolores		dissolved
13	Arsenic, standard deviation	As std dev	±	Basallote, M Dolores		dissolved
14	Zinc	Zn	µg/l	Basallote, M Dolores		dissolved
15	Zinc, standard deviation	Zn std dev	±	Basallote, M Dolores		dissolved
16	Lead	Pb	µg/l	Basallote, M Dolores		dissolved
17	Lead, standard deviation	Pb std dev	±	Basallote, M Dolores		dissolved
18	Salinity	Sal		Basallote, M Dolores
19	Temperature, water	Temp	°C	Basallote, M Dolores
20	pH	pH		Basallote, M Dolores	Potentiometric	NBS scale
21	pH, standard deviation	pH std dev	±	Basallote, M Dolores	Potentiometric	NBS scale
22	Alkalinity, total	AT	µmol/kg	Basallote, M Dolores	Potentiometric titration
23	Carbon, inorganic, dissolved	DIC	µmol/kg	Basallote, M Dolores	Calculated using CO2SYS
24	Bicarbonate ion	[HCO3]-	µmol/kg	Basallote, M Dolores	Calculated using CO2SYS
25	Carbonate ion	[CO3]2-	µmol/kg	Basallote, M Dolores	Calculated using CO2SYS
26	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Basallote, M Dolores	Calculated using CO2SYS
27	Aragonite saturation state	Omega Arg		Basallote, M Dolores	Calculated using CO2SYS
28	Calcite saturation state	Omega Cal		Basallote, M Dolores	Calculated using CO2SYS
29	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
30	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
31	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
32	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
33	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
34	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
35	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
36	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
37	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
38	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

1208 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Type (study)	2 Species	3 Reg spec no	4 URL ref (WoRMS Aphia ID)	5 Treat	6 Site (sediment site)	7 Mortality [%]	8 Mortality std dev [±]	9 Time [h]	10 Fe [µg/l] (dissolved)	11 Fe std dev [±] (dissolved)	12 As [µg/l] (dissolved)	13 As std dev [±] (dissolved)	14 Zn [µg/l] (dissolved)	15 Zn std dev [±] (dissolved)	16 Pb [µg/l] (dissolved)	17 Pb std dev [±] (dissolved)	18 Sal	19 Temp [°C]	20 pH (NBS scale, Potentiometric)	21 pH std dev [±] (NBS scale, Potentiometric)	22 AT [µmol/kg] (Potentiometric titration)	23 DIC [µmol/kg] (Calculated using CO2SYS)	24 [HCO3]- [µmol/kg] (Calculated using CO2SYS)	25 [CO3]2- [µmol/kg] (Calculated using CO2SYS)	26 pCO2water_SST_wet [µatm] (Calculated using CO2SYS)	27 Omega Arg (Calculated using CO2SYS)	28 Omega Cal (Calculated using CO2SYS)	29 CSC flag (Calculated using seacarb afte...)	30 pH (total scale, Calculated using...)	31 CO2 [µmol/kg] (Calculated using seacarb afte...)	32 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	33 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	34 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	35 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	36 DIC [µmol/kg] (Calculated using seacarb afte...)	37 Omega Arg (Calculated using seacarb afte...)	38 Omega Cal (Calculated using seacarb afte...)
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 8.0	Rio San Pedro	0.0	0.0000										34	18	7.83	0.01	2307.93	2183.71	2064.26	96.46	365.28	1.46	2.32	26	7.71	33.59	974.35	977.76	2093.64	87.11	2214.34	1.35	2.10
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 8.0	Mazagon	2.5	3.5355										34	18	7.73	0.01	2501.39	2408.48	2291.76	84.30	514.94	1.27	2.03	26	7.61	46.79	1357.03	1361.77	2315.90	76.53	2439.22	1.19	1.84
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 8.0	Muelle de Levante	0.0	0.0000										34	18	7.72	0.02	2018.80	1943.87	1851.93	64.05	442.88	0.97	1.54	26	7.60	38.59	1119.36	1123.28	1866.53	60.27	1965.39	0.94	1.45
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 7.1	Rio San Pedro	5.0	7.0711										34	18	7.14	0.05	4189.11	4420.92	4114.66	32.48	4347.74	0.49	0.78	26	7.02	323.48	9382.71	9415.79	4110.69	34.87	4469.04	0.54	0.84
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 7.1	Mazagon	0.0	0.0000										34	18	7.18	0.02	4079.69	4273.39	3999.47	34.87	3796.07	0.53	0.84	26	7.06	286.75	8317.45	8346.74	3995.83	37.17	4319.75	0.58	0.89
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 7.1	Muelle de Levante	5.0	0.0000										34	18	7.14	0.01	3591.24	3793.48	3527.69	27.15	3789.75	0.41	0.65	26	7.02	277.21	8040.72	8069.02	3522.79	29.89	3829.89	0.46	0.72
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.6	Rio San Pedro	2.5	3.5355										34	18	6.56	0.00	8836.13	11149.03	8799.34	17.27	37039.70	0.26	0.42	26	6.44	2632.41	76354.23	76642.65	8795.09	19.62	11447.11	0.30	0.47
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.6	Mazagon	0.0	0.0000										34	18	6.60	0.00	8099.91	10048.01	8063.06	17.19	31248.78	0.26	0.41	26	6.48	2199.66	63802.25	64040.33	8058.41	19.71	10277.78	0.31	0.47
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.6	Muelle de Levante	0.0	0.0000										34	18	6.63	0.04	7324.94	8960.25	7288.71	16.77	26278.29	0.25	0.40	26	6.51	1855.65	53824.02	54022.89	7284.46	19.09	9159.20	0.30	0.46
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.1	Rio San Pedro	100.0	0.0000										34	18	6.14	0.03	24472.04	41664.31	24435.36	18.11	273314.29	0.27	0.44	26	6.02	19235.31	557929.68	560757.48	24431.15	20.72	43687.17	0.32	0.50
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.1	Mazagon	70.0	38.9000										34	18	6.15	0.00	16402.32	27622.04	16376.96	12.43	178378.39	0.19	0.30	26	6.03	12598.15	365415.72	367119.05	16374.39	14.21	28986.75	0.22	0.34
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.1	Muelle de Levante	90.0	14.1421										34	18	6.16	0.00	16349.04	27390.57	16323.43	12.54	175550.89	0.19	0.30	26	6.04	12270.86	355922.41	357573.01	16320.49	14.49	28605.84	0.22	0.35
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 8.0	Rio San Pedro			1	21.2000	1.3000	6.0265	0.0276	3.2118	0.6247	0.1000	0.0000	34	18	7.83	0.01	2307.93	2183.71	2064.26	96.46	365.28	1.46	2.32	26	7.71	33.59	974.35	977.76	2093.64	87.11	2214.34	1.35	2.10
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 7.1	Rio San Pedro			1	22.8450	2.5951	6.0268	0.2938	4.3590	0.1457	0.1000	0.0000	34	18	7.14	0.05	4189.11	4420.92	4114.66	32.48	4347.74	0.49	0.78	26	7.02	323.48	9382.71	9415.79	4110.69	34.87	4469.04	0.54	0.84
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.6	Rio San Pedro			1	40.8050	14.9553	5.4595	0.6498	9.5875	3.4118	1.8430	0.1250	34	18	6.56	0.00	8836.13	11149.03	8799.34	17.27	37039.70	0.26	0.42	26	6.44	2632.41	76354.23	76642.65	8795.09	19.62	11447.11	0.30	0.47
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.1	Rio San Pedro			1	36.5700	11.9077	4.8600	0.2220	12.1630	3.1212	0.2660	0.0210	34	18	6.14	0.03	24472.04	41664.31	24435.36	18.11	273314.29	0.27	0.44	26	6.02	19235.31	557929.68	560757.48	24431.15	20.72	43687.17	0.32	0.50
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 8.0	Rio San Pedro			10	12.7795	2.0082	1.6265	0.5416	0.0000	0.5317	0.5990	0.4893	34	18	7.83	0.01	2307.93	2183.71	2064.26	96.46	365.28	1.46	2.32	26	7.71	33.59	974.35	977.76	2093.64	87.11	2214.34	1.35	2.10
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 7.1	Rio San Pedro			10	8.5995	0.4243	2.5173	0.1602	0.0000	0.3536	0.1000	0.0000	34	18	7.14	0.05	4189.11	4420.92	4114.66	32.48	4347.74	0.49	0.78	26	7.02	323.48	9382.71	9415.79	4110.69	34.87	4469.04	0.54	0.84
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.6	Rio San Pedro			10	23.3295	0.9546	1.4925	0.6534	0.0000	2.4254	0.1000	0.0000	34	18	6.56	0.00	8836.13	11149.03	8799.34	17.27	37039.70	0.26	0.42	26	6.44	2632.41	76354.23	76642.65	8795.09	19.62	11447.11	0.30	0.47
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.1	Rio San Pedro			10	30.6595	10.9884	0.7730	0.0926	11.9120	0.0590	0.1000	0.0000	34	18	6.14	0.03	24472.04	41664.31	24435.36	18.11	273314.29	0.27	0.44	26	6.02	19235.31	557929.68	560757.48	24431.15	20.72	43687.17	0.32	0.50
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 8.0	Mazagon			1	33.3050	7.2054	14.6350	2.7506	3.5305	0.8492	0.1000	0.0000	34	18	7.73	0.01	2501.39	2408.48	2291.76	84.30	514.94	1.27	2.03	26	7.61	46.79	1357.03	1361.77	2315.90	76.53	2439.22	1.19	1.84
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 7.1	Mazagon			1	36.2550	4.2639	8.8545	0.2411	8.1278	0.2053	0.1000	0.0000	34	18	7.18	0.02	4079.69	4273.39	3999.47	34.87	3796.07	0.53	0.84	26	7.06	286.75	8317.45	8346.74	3995.83	37.17	4319.75	0.58	0.89
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.6	Mazagon			1	12.2550	3.8962	6.3575	0.9086	27.3117	16.7042	0.4080	0.0340	34	18	6.60	0.00	8099.91	10048.01	8063.06	17.19	31248.78	0.26	0.41	26	6.48	2199.66	63802.25	64040.33	8058.41	19.71	10277.78	0.31	0.47
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.1	Mazagon			1	11.0450	4.3063	3.0585	0.3005	17.5350	17.8427	0.3350	0.0410	34	18	6.15	0.00	16402.32	27622.04	16376.96	12.43	178378.39	0.19	0.30	26	6.03	12598.15	365415.72	367119.05	16374.39	14.21	28986.75	0.22	0.34
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 8.0	Mazagon			10	11.4895	0.2121	13.6105	2.4324	0.0000	0.2965	0.0000	0.0000	34	18	7.73	0.01	2501.39	2408.48	2291.76	84.30	514.94	1.27	2.03	26	7.61	46.79	1357.03	1361.77	2315.90	76.53	2439.22	1.19	1.84
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 7.1	Mazagon			10	18.4345	2.4678	8.3155	2.5527	2.8520	4.3841	0.3610	0.0530	34	18	7.18	0.02	4079.69	4273.39	3999.47	34.87	3796.07	0.53	0.84	26	7.06	286.75	8317.45	8346.74	3995.83	37.17	4319.75	0.58	0.89
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.6	Mazagon			10	5.2845	1.2657	5.6355	1.8455	18.5470	5.5084	0.0000	0.0000	34	18	6.60	0.00	8099.91	10048.01	8063.06	17.19	31248.78	0.26	0.41	26	6.48	2199.66	63802.25	64040.33	8058.41	19.71	10277.78	0.31	0.47
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.1	Mazagon			10	20.6195	1.4425	2.2805	2.3335	37.6920	17.2817	0.0000	0.0000	34	18	6.15	0.00	16402.32	27622.04	16376.96	12.43	178378.39	0.19	0.30	26	6.03	12598.15	365415.72	367119.05	16374.39	14.21	28986.75	0.22	0.34
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 8.0	Muelle de Levante			1	35.6050	2.8779	10.2250	0.8556	9.3235	3.1063	1.3000	0.0000	34	18	7.72	0.02	2018.80	1943.87	1851.93	64.05	442.88	0.97	1.54	26	7.60	38.59	1119.36	1123.28	1866.53	60.27	1965.39	0.94	1.45
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 7.1	Muelle de Levante			1	26.6550	0.5728	9.0088	0.5136	19.9900	0.0141	0.6980	0.3366	34	18	7.14	0.01	3591.24	3793.48	3527.69	27.15	3789.75	0.41	0.65	26	7.02	277.21	8040.72	8069.02	3522.79	29.89	3829.89	0.46	0.72
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.6	Muelle de Levante			1	21.0850	1.5344	9.2825	0.2553	24.0667	5.0629	0.1000	0.0000	34	18	6.63	0.04	7324.94	8960.25	7288.71	16.77	26278.29	0.25	0.40	26	6.51	1855.65	53824.02	54022.89	7284.46	19.09	9159.20	0.30	0.46
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.1	Muelle de Levante			1	22.7850	1.4637	7.5193	2.4207	40.0433	9.0981			34	18	6.16	0.00	16349.04	27390.57	16323.43	12.54	175550.89	0.19	0.30	26	6.04	12270.86	355922.41	357573.01	16320.49	14.49	28605.84	0.22	0.35
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 8.0	Muelle de Levante			10	17.3295	0.0849	9.9305	0.5515	0.0000	0.5282	0.1000	0.0000	34	18	7.72	0.02	2018.80	1943.87	1851.93	64.05	442.88	0.97	1.54	26	7.60	38.59	1119.36	1123.28	1866.53	60.27	1965.39	0.94	1.45
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 7.1	Muelle de Levante			10	8.4795	1.5000	6.7665	1.5613	20.5820	15.1038	0.3065	0.0092	34	18	7.14	0.01	3591.24	3793.48	3527.69	27.15	3789.75	0.41	0.65	26	7.02	277.21	8040.72	8069.02	3522.79	29.89	3829.89	0.46	0.72
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.6	Muelle de Levante			10	14.2095	0.3394	6.8505	0.6930	19.5220	12.4309	0.1000	0.0000	34	18	6.63	0.04	7324.94	8960.25	7288.71	16.77	26278.29	0.25	0.40	26	6.51	1855.65	53824.02	54022.89	7284.46	19.09	9159.20	0.30	0.46
laboratory	Ruditapes philippinarum (mollusk)	231750	marinespecies.org	pH 6.1	Muelle de Levante			10	33.3245	1.3223	8.6005	0.0707	72.6770	14.6583			34	18	6.16	0.00	16349.04	27390.57	16323.43	12.54	175550.89	0.19	0.30	26	6.04	12270.86	355922.41	357573.01	16320.49	14.49	28605.84	0.22	0.35