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Thomsen, Jörn; Haynert, Kristin; Wegner, K Mathias; Melzner, Frank (2015): Impact of seawater carbonate chemistry on the calcification of marine bivalves [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.862531, Supplement to: Thomsen, J et al. (2015): Impact of seawater carbonate chemistry on the calcification of marine bivalves. Biogeosciences, 12(14), 4209-4220, https://doi.org/10.5194/bg-12-4209-2015

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Abstract:
Bivalve calcification, particularly of the early larval stages, is highly sensitive to the change in ocean carbonate chemistry resulting from atmospheric CO2 uptake. Earlier studies suggested that declining seawater [CO32−] and thereby lowered carbonate saturation affect shell production. However, disturbances of physiological processes such as acid-base regulation by adverse seawater pCO2 and pH can affect calcification in a secondary fashion. In order to determine the exact carbonate system component by which growth and calcification are affected it is necessary to utilize more complex carbonate chemistry manipulations. As single factors, pCO2 had no effects and [HCO3-] and pH had only limited effects on shell growth, while lowered [CO32−] strongly impacted calcification. Dissolved inorganic carbon (CT) limiting conditions led to strong reductions in calcification, despite high [CO32−], indicating that [HCO3-] rather than [CO32−] is the inorganic carbon source utilized for calcification by mytilid mussels. However, as the ratio [HCO3-] / [H+] is linearly correlated with [CO32−] it is not possible to differentiate between these under natural seawater conditions. An equivalent of about 80 μmol kg−1 [CO32−] is required to saturate inorganic carbon supply for calcification in bivalves. Below this threshold biomineralization rates rapidly decline. A comparison of literature data available for larvae and juvenile mussels and oysters originating from habitats differing substantially with respect to prevailing carbonate chemistry conditions revealed similar response curves. This suggests that the mechanisms which determine sensitivity of calcification in this group are highly conserved. The higher sensitivity of larval calcification seems to primarily result from the much higher relative calcification rates in early life stages. In order to reveal and understand the mechanisms that limit or facilitate adaptation to future ocean acidification, it is necessary to better understand the physiological processes and their underlying genetics that govern inorganic carbon assimilation for calcification.
Keyword(s):
Animalia; Baltic Sea; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Growth/Morphology; Laboratory experiment; Mollusca; Mytilus edulis; Pelagos; Single species; Temperate; Zooplankton
Original version:
Thomsen, Jörn; Haynert, Kristin; Wegner, K Mathias; Melzner, Frank (2016): Calcification repsonse of m,arione bivalves to changed carbonate chemistry. PANGAEA, https://doi.org/10.1594/PANGAEA.856883
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse (2015): seacarb: seawater carbonate chemistry with R. R package version 3.0.8. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-07-04.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeThomsen, Jörnstudy
SpeciesSpeciesThomsen, Jörn
Registration number of speciesReg spec noThomsen, Jörn
Uniform resource locator/link to referenceURL refThomsen, JörnWoRMS Aphia ID
ExperimentExpThomsen, Jörn
Life stageLife stageThomsen, Jörn
FigureFigThomsen, Jörn
TreatmentTreatThomsen, Jörn
MassMassmgThomsen, Jörnshell mass growth
10 Mass, standard deviationMass std dev±Thomsen, Jörnshell mass growth
11 Shell lengthShell lmmThomsen, Jörn
12 Shell length, standard deviationShell l std dev±Thomsen, Jörn
13 Shell lengthShell lmmThomsen, Jörnlarvae 70 h post fertilization
14 Shell length, standard deviationShell l std dev±Thomsen, Jörnlarvae 70 h post fertilization
15 RatioRatioThomsen, Jörn[HCO3-]/[H+] mol/mymol
16 Carbon, inorganic, dissolvedDICµmol/kgThomsen, Jörn
17 Carbon, inorganic, dissolved, standard deviationDIC std dev±Thomsen, Jörn
18 pHpHThomsen, JörnPotentiometrictotal scale
19 pH, standard deviationpH std dev±Thomsen, JörnPotentiometrictotal scale
20 Bicarbonate ion[HCO3]-µmol/kgThomsen, JörnCalculated using CO2SYS
21 Bicarbonate ion, standard deviation[HCO3]- std dev±Thomsen, JörnCalculated using CO2SYS
22 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmThomsen, JörnCalculated using CO2SYS
23 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Thomsen, JörnCalculated using CO2SYS
24 Carbonate ion[CO3]2-µmol/kgThomsen, JörnCalculated using CO2SYS
25 Carbonate ion, standard deviation[CO3]2- std dev±Thomsen, JörnCalculated using CO2SYS
26 Aragonite saturation stateOmega ArgThomsen, JörnCalculated using CO2SYS
27 Aragonite saturation state, standard deviationOmega Arg std dev±Thomsen, JörnCalculated using CO2SYS
28 RatioRatioThomsen, Jörn[DIC]/[H+] mol/mymol
29 PercentagePerc%Thomsen, Jörnshell length % of control
30 SalinitySalThomsen, Jörn
31 Salinity, standard deviationSal std dev±Thomsen, Jörn
32 Temperature, waterTemp°CThomsen, Jörn
33 Temperature, water, standard deviationTemp std dev±Thomsen, Jörn
34 Alkalinity, totalATµmol/kgThomsen, Jörn
35 Alkalinity, total, standard deviationAT std dev±Thomsen, Jörn
36 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1491 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Exp

Life stage

Fig

Treat

Mass [mg]
(shell mass growth)
10 
Mass std dev [±]
(shell mass growth)
11 
Shell l [mm]
12 
Shell l std dev [±]
13 
Shell l [mm]
(larvae 70 h post fertilization)
14 
Shell l std dev [±]
(larvae 70 h post fertilization)
15 
Ratio
([HCO3-]/[H+] mol/mymol)
16 
DIC [µmol/kg]
17 
DIC std dev [±]
18 
pH
(total scale, Potentiometric)
19 
pH std dev [±]
(total scale, Potentiometric)
20 
[HCO3]- [µmol/kg]
(Calculated using CO2SYS)
21 
[HCO3]- std dev [±]
(Calculated using CO2SYS)
22 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
23 
pCO2 std dev [±]
(Calculated using CO2SYS)
24 
[CO3]2- [µmol/kg]
(Calculated using CO2SYS)
25 
[CO3]2- std dev [±]
(Calculated using CO2SYS)
26 
Omega Arg
(Calculated using CO2SYS)
27 
Omega Arg std dev [±]
(Calculated using CO2SYS)
28 
Ratio
([DIC]/[H+] mol/mymol)
29 
Perc [%]
(shell length % of control)
30 
Sal
31 
Sal std dev [±]
32 
Temp [°C]
33 
Temp std dev [±]
34 
AT [µmol/kg]
35 
AT std dev [±]
36 
CSC flag
(Calculated using seacarb afte...)
37 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
38 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
39 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
40 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
41 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
42 
DIC [µmol/kg]
(Calculated using seacarb afte...)
43 
Omega Arg
(Calculated using seacarb afte...)
44 
Omega Cal
(Calculated using seacarb afte...)
laboratoryMytilus edulis (mollusk)140480marinespecies.org1Juvenile1390/7527.04.90.2401886.076.08.130.01784.068.0501.01.083.011.01.330.217.71.317.31.21976.087.0812.99337.52338.711704.97116.161976.001.863.10
laboratoryMytilus edulis (mollusk)140480marinespecies.org1Juvenile14000/1217.72.30.0402104.0199.07.150.01935.0132.05214.081.010.00.00.150.017.71.317.31.22052.028.08146.883816.173829.662018.5614.402052.000.230.38
laboratoryMytilus edulis (mollusk)140480marinespecies.org1Juvenile1390/1213.41.10.020847.030.07.740.1810.029.0564.0101.015.02.00.240.017.71.317.31.2851.034.0814.77383.78385.13789.7621.92851.000.350.59
laboratoryMytilus edulis (mollusk)140480marinespecies.org1Juvenile14000/7528.62.50.2105909.058.07.570.05613.061.05649.099.071.07.01.140.117.71.317.31.25765.074.08153.393985.463999.555544.87104.055765.001.672.78
laboratoryMytilus edulis (mollusk)140480marinespecies.org2larvae2390/780.11740.00840.1701863.023.07.990.01766.027.0510.049.078.06.01.260.113.60.117.70.11943.017.0819.86510.39512.181767.0877.371943.001.252.14
laboratoryMytilus edulis (mollusk)140480marinespecies.org2larvae22400/200.09230.00900.0302032.041.07.490.01936.040.01778.0149.027.03.00.440.013.60.117.70.11198.043.0841.171058.321062.041158.7116.041198.000.260.44
laboratoryMytilus edulis (mollusk)140480marinespecies.org2larvae2390/200.09300.00850.060848.06.07.630.1811.06.0544.078.016.03.00.250.013.60.117.70.1852.011.0820.88536.72538.61811.1615.50852.000.250.43
laboratoryMytilus edulis (mollusk)140480marinespecies.org2larvae22400/780.11580.00600.1703398.0111.07.720.13252.0104.01775.0207.077.015.01.250.213.60.117.70.13418.0133.0868.061749.591755.733253.0576.493418.001.242.11
laboratoryMytilus edulis (mollusk)140480marinespecies.org3larvae3390/1000.11190.00680.2301942.05.08.090.01825.07.0404.014.0100.03.01.600.015.20.216.00.12056.04.0816.45405.39406.841828.2299.672056.001.592.70
laboratoryMytilus edulis (mollusk)140480marinespecies.org3larvae30/3000.09880.01000.6801471.075.08.760.11169.013.056.013.0300.020.04.780.315.20.216.00.11859.047.082.2555.5455.741171.58298.741859.004.778.09
laboratoryMytilus edulis (mollusk)140480marinespecies.org3larvae30/600.09210.00120.140540.066.08.610.1342.067.024.011.062.08.00.990.115.20.216.00.1540.057.080.9323.0223.10343.7462.05540.000.991.68
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4d390/2350.11320.00860.3702840.11.78.200.02583.71.5435.10.9239.90.23.770.028.60.115.50.23135.51.8814.66383.46384.852536.73260.193135.504.096.46
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4d390/1720.10690.00870.2502462.60.08.000.12283.921.6508.486.4159.125.12.500.428.60.115.50.22659.036.5821.13552.66554.652306.79149.292659.002.353.71
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4d390/1160.11220.00660.1601785.8296.98.000.01664.6278.5411.375.4105.615.51.660.228.60.115.50.21928.1308.5815.20397.62399.051659.65107.411928.101.692.67
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4d390/700.11320.00720.1001360.7314.07.900.01279.4295.1382.187.966.715.51.050.228.60.115.50.21457.1326.3814.78386.50387.891281.4465.871457.101.031.64
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4d390/320.09790.00830.0601097.64.67.800.01041.63.7425.24.139.81.20.630.028.60.115.50.21154.96.7815.02392.87394.281034.6542.251154.900.661.05
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4d390/90.06110.00340.020711.641.87.600.0678.440.0450.810.116.22.30.250.028.60.115.50.2732.346.1815.51405.72407.19674.1817.37732.300.270.43
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4d2400/2350.09500.01190.3006240.161.27.700.05938.058.72850.273.2193.60.03.040.028.60.115.50.26354.358.68108.582839.472849.735940.00192.676354.303.034.79
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4d2400/1720.10570.01780.2405473.673.17.700.05212.871.02679.872.0158.91.22.500.028.60.115.50.25557.868.0894.912481.922490.885192.03168.405557.802.654.18
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4d2400/1160.10480.01040.1604561.938.27.600.04349.636.52814.322.2105.02.61.650.028.60.115.50.24581.542.0899.752608.652618.074334.76111.684581.501.752.77
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4d2400/700.07410.00600.0903571.124.97.400.03395.118.23077.5312.658.25.10.910.128.60.115.50.23527.46.68124.073244.523256.253401.7355.303527.400.871.37
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4d2400/90.06980.0201478.915.17.100.01364.318.42733.1101.910.70.70.170.028.60.115.50.21393.020.3899.202594.162603.531363.1611.111393.000.170.28
laboratoryMytilus edulis (mollusk)140480marinespecies.org2larvae4a, b390/780.1741863.023.07.990.01766.027.0508.049.078.06.01.260.10.1810013.60.117.70.11943.017.0819.86510.39512.181767.0877.371943.001.252.14
laboratoryMytilus edulis (mollusk)140480marinespecies.org2larvae4a, b2400/200.0602033.041.07.490.01937.040.01777.0149.027.03.00.430.00.067913.60.117.70.11198.043.0841.171058.321062.041158.7116.041198.000.260.44
laboratoryMytilus edulis (mollusk)140480marinespecies.org2larvae4a, b390/200.035848.06.07.630.1811.06.0539.078.015.03.00.250.00.047913.60.117.70.1852.011.0820.88536.72538.61811.1615.50852.000.250.43
laboratoryMytilus edulis (mollusk)140480marinespecies.org2larvae4a, b2400/780.1703399.0111.07.720.13254.0104.01770.0207.076.015.01.230.20.189913.60.117.70.13418.0133.0868.061749.591755.733253.0576.493418.001.242.11
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4a, b390/2350.3722839.08.162583.0430.0240.03.760.4110128.60.115.50.23135.51.8816.35427.63429.172579.97241.343135.503.795.99
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4a, b390/1720.2752463.08.082269.0449.0177.02.780.309528.60.115.50.22659.036.5817.12447.71449.332246.73174.812659.002.754.34
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4a, b390/1160.1811996.07.991862.0460.0116.01.830.1910028.60.115.50.21928.1308.5815.61408.17409.641664.92105.301928.101.652.62
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4a, b390/700.1211583.07.911488.0440.078.01.220.1310128.60.115.50.21457.1326.3814.40376.64378.001277.8567.221457.101.061.67
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4a, b390/320.0631101.07.781044.0415.041.00.640.078728.60.115.50.21154.96.7815.81413.32414.811039.5440.541154.900.641.01
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4a, b390/90.028741.07.59707.0436.018.00.280.035428.60.115.50.2732.346.1815.90415.93417.43675.4117.01732.300.270.42
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4a, b2400/2350.3006283.07.705980.02859.0193.03.030.328528.60.115.50.26354.358.68108.582839.472849.735940.00192.676354.303.034.79
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4a, b2400/1720.2455525.07.675263.02712.0158.02.480.269428.60.115.50.25557.868.08102.142671.152680.805214.91157.865557.802.483.92
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4a, b2400/1160.1664589.07.584376.02774.0107.01.670.179328.60.115.50.24581.542.08104.712738.232748.124345.29106.914581.501.682.66
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4a, b2400/700.0963553.07.453382.02855.062.00.970.106628.60.115.50.23527.46.68110.102879.172889.573387.0161.783527.400.971.53
laboratoryMytilus edulis (mollusk)140480marinespecies.org4larvae4a, b2400/90.0171490.07.101378.02631.011.00.170.026228.60.115.50.21393.020.3899.202594.162603.531363.1611.111393.000.170.28
laboratoryMytilus edulis (mollusk)140480marinespecies.org1Juvenile4c390/750.2401888.076.08.130.01783.068.0501.01.082.011.01.320.10.2510017.71.317.31.21976.087.0812.99337.52338.711704.97116.161976.001.863.10
laboratoryMytilus edulis (mollusk)140480marinespecies.org1Juvenile4c4000/120.0302246.0199.07.160.02035.0132.05214.081.010.00.00.160.00.036617.71.317.31.22052.028.08143.483727.883741.062017.7914.732052.000.240.39
laboratoryMytilus edulis (mollusk)140480marinespecies.org1Juvenile4c390/120.040847.030.07.740.1809.029.0564.0101.015.02.00.240.00.055017.71.317.31.2851.034.0814.77383.78385.13789.7621.92851.000.350.59
laboratoryMytilus edulis (mollusk)140480marinespecies.org1Juvenile4c4000/750.2105909.058.07.570.05616.061.05649.099.071.07.01.140.20.2210617.71.317.31.25765.074.08153.393985.463999.555544.87104.055765.001.672.78