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Liu, Saixi; Shi, Wei; Guo, Cheng; Zhao, Xinguo; Han, Yu; Peng, Chao; Chai, Xueliang; Liu, Guangxu (2016): Ocean acidification weakens the immune response of blood clam through hampering the NF-kappa beta and toll-like receptor pathways [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.861971, Supplement to: Liu, S et al. (2016): Ocean acidification weakens the immune response of blood clam through hampering the NF-kappa beta and toll-like receptor pathways. Fish & Shellfish Immunology, 54, 322-327, https://doi.org/10.1016/j.fsi.2016.04.030

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Abstract:
The impact of pCO2 driven ocean acidification on marine bivalve immunity remains poorly understood. To date, this impact has only been investigated in a few bivalve species and the underlying molecular mechanism remains unknown. In the present study, the effects of the realistic future ocean pCO2 levels (pH at 8.1, 7.8, and 7.4) on the total number of haemocyte cells (THC), phagocytosis status, blood cell types composition, and expression levels of twelve genes from the NF-kappa beta signaling and toll-like receptor pathways of a typical bottom burrowing bivalve, blood clam (Tegillarca granosa), were investigated. The results obtained showed that while both THC number and phagocytosis frequency were significantly reduced, the percentage of red and basophil granulocytes were significantly decreased and increased, respectively, upon exposure to elevated pCO2. In addition, exposure to pCO2 acidified seawater generally led to a significant down-regulation in the inducer and key response genes of NF-kappa beta signaling and toll-like receptor pathways. The results of the present study revealed that ocean acidification may hamper immune responses of the bivalve T. granosa which subsequently render individuals more susceptible to pathogens attacks such as those from virus and bacteria.
Keyword(s):
Animalia; Benthic animals; Benthos; Brackish waters; Containers and aquaria (20-1000 L or < 1 m**2); Gene expression (incl. proteomics); Growth/Morphology; Immunology/Self-protection; Laboratory experiment; Mollusca; North Pacific; Single species; Tegillarca granosa; Temperate
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse (2015): seacarb: seawater carbonate chemistry with R. R package version 3.0.8. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-06-21.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeLiu, Guangxustudy
SpeciesSpeciesLiu, Guangxu
Registration number of speciesReg spec noLiu, Guangxu
Uniform resource locator/link to referenceURL refLiu, GuangxuWoRMS Aphia ID
HeighthmmLiu, Guangxu
Height, standard errorh std e±Liu, Guangxu
TissuesTissuesLiu, Guangxu
DateDateLiu, Guangxu
TreatmentTreatLiu, Guangxu
10 Gene nameGeneLiu, Guangxu
11 mRNA gene expression, relativemRNA expressLiu, Guangxu
12 mRNA gene expression, relative, standard errormRNA express std e±Liu, Guangxu
13 Hemocyte countHemocyte#Liu, Guangxu
14 Hemocyte count, standard errorHemocyte std e±Liu, Guangxu
15 PercentagePerc%Liu, Guangxured granulocyte
16 Percentage, standard errorPerc std e±Liu, Guangxured granulocyte
17 PercentagePerc%Liu, Guangxubasophil granulocyte
18 Percentage, standard errorPerc std e±Liu, Guangxubasophil granulocyte
19 PercentagePerc%Liu, Guangxuhyalinocyte
20 Percentage, standard errorPerc std e±Liu, Guangxuhyalinocyte
21 Phagocytosis ratePhagocytosis rate%Liu, Guangxu
22 Phagocytosis rate, standard errorPhagocytosis rate std e±Liu, Guangxu
23 pHpHLiu, GuangxuPotentiometricNBS scale
24 pH, standard errorpH std e±Liu, GuangxuPotentiometricNBS scale
25 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmLiu, GuangxuCalculated using CO2SYS
26 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Liu, GuangxuCalculated using CO2SYS
27 SalinitySalLiu, Guangxu
28 Salinity, standard errorSal std e±Liu, Guangxu
29 Temperature, waterTemp°CLiu, Guangxu
30 Temperature, water, standard errorT std e±Liu, Guangxu
31 Alkalinity, totalATµmol/kgLiu, GuangxuPotentiometric titration
32 Alkalinity, total, standard errorAT std e±Liu, GuangxuPotentiometric titration
33 Carbon, inorganic, dissolvedDICµmol/kgLiu, GuangxuCalculated using CO2SYS
34 Carbon, inorganic, dissolved, standard errorDIC std e±Liu, GuangxuCalculated using CO2SYS
35 Aragonite saturation stateOmega ArgLiu, GuangxuCalculated using CO2SYS
36 Aragonite saturation state, standard errorOmega Arg std e±Liu, GuangxuCalculated using CO2SYS
37 Calcite saturation stateOmega CalLiu, GuangxuCalculated using CO2SYS
38 Calcite saturation state, standard errorOmega Cal std e±Liu, GuangxuCalculated using CO2SYS
39 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
41 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1503 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

h [mm]

h std e [±]

Tissues

Date

Treat
10 
Gene
11 
mRNA express
12 
mRNA express std e [±]
13 
Hemocyte [#]
14 
Hemocyte std e [±]
15 
Perc [%]
(red granulocyte)
16 
Perc std e [±]
(red granulocyte)
17 
Perc [%]
(basophil granulocyte)
18 
Perc std e [±]
(basophil granulocyte)
19 
Perc [%]
(hyalinocyte)
20 
Perc std e [±]
(hyalinocyte)
21 
Phagocytosis rate [%]
22 
Phagocytosis rate std e [±]
23 
pH
(NBS scale, Potentiometric)
24 
pH std e [±]
(NBS scale, Potentiometric)
25 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
26 
pCO2water_SST_wet std e [±]
(Calculated using CO2SYS)
27 
Sal
28 
Sal std e [±]
29 
Temp [°C]
30 
T std e [±]
31 
AT [µmol/kg]
(Potentiometric titration)
32 
AT std e [±]
(Potentiometric titration)
33 
DIC [µmol/kg]
(Calculated using CO2SYS)
34 
DIC std e [±]
(Calculated using CO2SYS)
35 
Omega Arg
(Calculated using CO2SYS)
36 
Omega Arg std e [±]
(Calculated using CO2SYS)
37 
Omega Cal
(Calculated using CO2SYS)
38 
Omega Cal std e [±]
(Calculated using CO2SYS)
39 
CSC flag
(Calculated using seacarb afte...)
40 
pH
(total scale, Calculated using...)
41 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
42 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
43 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
44 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
45 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
46 
DIC [µmol/kg]
(Calculated using seacarb afte...)
47 
Omega Arg
(Calculated using seacarb afte...)
48 
Omega Cal
(Calculated using seacarb afte...)
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.1TLR11.006340.081588.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.8TLR11.089300.073647.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.4TLR10.462970.102587.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.1TLR21.018130.136228.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.8TLR20.408770.047257.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.4TLR26.149111.400547.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.1TLR61.000260.016128.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.8TLR60.235580.039767.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.4TLR60.219350.064057.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.1TLR41.007020.082008.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.8TLR41.060800.111727.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.4TLR40.608120.112047.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.1TLR51.000230.015268.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.8TLR50.716300.146607.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.4TLR50.453330.016637.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.1MYD881.009340.094728.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.8MYD881.155970.135917.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.4MYD880.124030.028277.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.1RIG-I1.000990.031758.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.8RIG-I0.592810.075757.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.4RIG-I0.160650.044907.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.1TRAF21.017760.135668.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.8TRAF22.547210.391697.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.4TRAF22.939770.263247.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.1TRIM251.004340.067318.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.8TRIM252.457550.128917.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.4TRIM251.810870.378087.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.1TAK11.000520.022948.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.8TAK10.895400.018277.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.4TAK10.440550.009607.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.1TAB21.017990.237198.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.8TAB24.875880.983447.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.4TAB23.428800.928807.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.1IKK alpha1.048580.218108.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.8IKK alpha0.614490.085157.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.4IKK alpha0.426440.049357.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=8.176100003500000.8620.0230.0900.0260.0110.0080.4700.0168.100.03549.632.8620.830.2523.90.22074.7711.551933.2118.451.970.013.170.02267.9517.11543.81545.571804.13115.181936.421.923.08
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.864500002900000.8490.0370.1460.0360.0020.0010.3410.0257.780.021187.726.0120.660.2124.00.12092.657.332044.5613.331.060.011.710.01267.6338.741233.791237.801953.0159.552051.300.991.60
laboratoryTegillarca granosa (mollusk)504471marinespecies.org18.171.65Hemocytes2014-08-01pH=7.453300001500000.7120.0240.2980.0240.0030.0020.3560.0247.410.033064.1627.2120.870.2124.00.32062.1717.322122.4631.180.440.010.700.01267.2692.692955.282964.882000.5826.202119.470.440.70