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Kottmeier, Dorothee; Rokitta, Sebastian D; Rost, Björn (2016): Acidification, not carbonation, is the major regulator of carbon fluxes in the coccolithophore Emiliania huxleyi [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.861851

Always quote citation above when using data! You can download the citation in several formats below.

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Keyword(s):
Bottles or small containers/Aquaria (<20 L); Chromista; Emiliania huxleyi; Haptophyta; Laboratory experiment; Laboratory strains; Not applicable; Pelagos; Phytoplankton; Primary production/Photosynthesis; Respiration; Single species
Related to:
Kottmeier, Dorothee; Rokitta, Sebastian D; Rost, Björn (2016): Acidification, not carbonation, is the major regulator of carbon fluxes in the coccolithophore Emiliania huxleyi. New Phytologist, 211(1), 126-137, https://doi.org/10.1111/nph.13885
Original version:
Kottmeier, Dorothee; Rokitta, Sebastian D; Rost, Björn (2016): Culture conditions, mass spectrometric measurements and acclimation carbonate chemistry. PANGAEA, https://doi.org/10.1594/PANGAEA.859864
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse (2015): seacarb: seawater carbonate chemistry with R. R package version 3.0.8. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2016-06-15.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeKottmeier, Dorotheestudy
SpeciesSpeciesKottmeier, Dorothee
Registration number of speciesReg spec noKottmeier, Dorothee
Uniform resource locator/link to referenceURL refKottmeier, DorotheeWoRMS Aphia ID
TreatmentTreatKottmeier, Dorotheeacclimation
IrradianceEµmol/m2/sKottmeier, Dorothee
TreatmentTreatKottmeier, Dorotheecarbonate chemsitry
Net photosynthesis ratePNµmol/mg/hKottmeier, DorotheeMass spectrometry
Net photosynthesis rate, standard deviationPN std dev±Kottmeier, DorotheeMass spectrometry
10 Respiration rate, oxygenResp O2µmol/mg/hKottmeier, DorotheeMass spectrometry
11 Respiration rate, oxygen, standard deviationResp O2 std dev±Kottmeier, DorotheeMass spectrometry
12 Carbon dioxide uptake rateCO2 upt rateµmol/mg/hKottmeier, DorotheeMass spectrometry
13 Carbon dioxide uptake, standard deviationCO2 upt rate std dev±Kottmeier, DorotheeMass spectrometry
14 Bicarbonate uptake rate[HCO3]- upt rateµmol/mg/hKottmeier, DorotheeMass spectrometry
15 Bicarbonate uptake rate, standard deviation[HCO3]- upt rate std dev±Kottmeier, DorotheeMass spectrometry
16 Carbon dioxide usage fractionfCO2Kottmeier, DorotheeMass spectrometry
17 Carbon dioxide usage fraction, standard deviationfCO2 std dev±Kottmeier, DorotheeMass spectrometry
18 Carbon dioxideCO2µmol/kgKottmeier, DorotheeMass spectrometry
19 Carbon dioxide, standard deviationCO2 std dev±Kottmeier, DorotheeMass spectrometry
20 Bicarbonate ion[HCO3]-µmol/kgKottmeier, DorotheeMass spectrometry
21 Bicarbonate ion, standard deviation[HCO3]- std dev±Kottmeier, DorotheeMass spectrometry
22 Hydrogen ion concentrationH+µmol/kgKottmeier, DorotheeMass spectrometry
23 Hydrogen ion concentration, standard deviationH+ std dev±Kottmeier, DorotheeMass spectrometry
24 SalinitySalKottmeier, Dorothee
25 Pressure, waterPressdbarKottmeier, Dorothee
26 PhosphatePHSPHTµmol/kgKottmeier, Dorothee
27 SilicateSILCATµmol/kgKottmeier, Dorothee
28 Temperature, waterTemp°CKottmeier, Dorothee
29 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
31 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35 Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38 Growth rateµ1/dayKottmeier, Dorothee
39 Growth rate, standard deviationµ std dev±Kottmeier, Dorothee
40 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmKottmeier, DorotheeCalculated using CO2SYSacclimation
41 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Kottmeier, DorotheeCalculated using CO2SYSacclimation
42 pHpHKottmeier, DorotheeCalculated using CO2SYSNBS scale, acclimation
43 pH, standard deviationpH std dev±Kottmeier, DorotheeCalculated using CO2SYSNBS scale, acclimation
44 Hydrogen ion concentrationH+µmol/kgKottmeier, DorotheeCalculated using CO2SYSacclimation
45 Hydrogen ion concentration, standard deviationH+ std dev±Kottmeier, DorotheeCalculated using CO2SYSacclimation
46 Alkalinity, totalATµmol/kgKottmeier, DorotheePotentiometric titrationacclimation
47 Alkalinity, total, standard deviationAT std dev±Kottmeier, DorotheePotentiometric titrationacclimation
48 Carbon, inorganic, dissolvedDICµmol/kgKottmeier, DorotheeColorimetricacclimation
49 Carbon, inorganic, dissolved, standard deviationDIC std dev±Kottmeier, DorotheeColorimetricacclimation
50 Carbon dioxideCO2µmol/kgKottmeier, DorotheeCalculated using CO2SYSacclimation
51 Carbon dioxide, standard deviationCO2 std dev±Kottmeier, DorotheeCalculated using CO2SYSacclimation
52 Bicarbonate ion[HCO3]-µmol/kgKottmeier, DorotheeCalculated using CO2SYSacclimation
53 Bicarbonate ion, standard deviation[HCO3]- std dev±Kottmeier, DorotheeCalculated using CO2SYSacclimation
54 Carbonate ion[CO3]2-µmol/kgKottmeier, DorotheeCalculated using CO2SYSacclimation
55 Carbonate ion, standard deviation[CO3]2- std dev±Kottmeier, DorotheeCalculated using CO2SYSacclimation
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1710 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Treat
(acclimation)

E [µmol/m2/s]

Treat
(carbonate chemsitry)

PN [µmol/mg/h]
(Mass spectrometry)

PN std dev [±]
(Mass spectrometry)
10 
Resp O2 [µmol/mg/h]
(Mass spectrometry)
11 
Resp O2 std dev [±]
(Mass spectrometry)
12 
CO2 upt rate [µmol/mg/h]
(Mass spectrometry)
13 
CO2 upt rate std dev [±]
(Mass spectrometry)
14 
[HCO3]- upt rate [µmol/mg/h]
(Mass spectrometry)
15 
[HCO3]- upt rate std dev [±]
(Mass spectrometry)
16 
fCO2
(Mass spectrometry)
17 
fCO2 std dev [±]
(Mass spectrometry)
18 
CO2 [µmol/kg]
(Mass spectrometry)
19 
CO2 std dev [±]
(Mass spectrometry)
20 
[HCO3]- [µmol/kg]
(Mass spectrometry)
21 
[HCO3]- std dev [±]
(Mass spectrometry)
22 
H+ [µmol/kg]
(Mass spectrometry)
23 
H+ std dev [±]
(Mass spectrometry)
24 
Sal
25 
Press [dbar]
26 
PHSPHT [µmol/kg]
27 
SILCAT [µmol/kg]
28 
Temp [°C]
29 
CSC flag
(Calculated using seacarb afte...)
30 
pH
(total scale, Calculated using...)
31 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
32 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
33 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
34 
DIC [µmol/kg]
(Calculated using seacarb afte...)
35 
AT [µmol/kg]
(Calculated using seacarb afte...)
36 
Omega Arg
(Calculated using seacarb afte...)
37 
Omega Cal
(Calculated using seacarb afte...)
38 
µ [1/day]
39 
µ std dev [±]
40 
pCO2water_SST_wet [µatm]
(acclimation, Calculated using...)
41 
pCO2 std dev [±]
(acclimation, Calculated using...)
42 
pH
(NBS scale, acclimation, Calcu...)
43 
pH std dev [±]
(NBS scale, acclimation, Calcu...)
44 
H+ [µmol/kg]
(acclimation, Calculated using...)
45 
H+ std dev [±]
(acclimation, Calculated using...)
46 
AT [µmol/kg]
(acclimation, Potentiometric t...)
47 
AT std dev [±]
(acclimation, Potentiometric t...)
48 
DIC [µmol/kg]
(acclimation, Colorimetric)
49 
DIC std dev [±]
(acclimation, Colorimetric)
50 
CO2 [µmol/kg]
(acclimation, Calculated using...)
51 
CO2 std dev [±]
(acclimation, Calculated using...)
52 
[HCO3]- [µmol/kg]
(acclimation, Calculated using...)
53 
[HCO3]- std dev [±]
(acclimation, Calculated using...)
54 
[CO3]2- [µmol/kg]
(acclimation, Calculated using...)
55 
[CO3]2- std dev [±]
(acclimation, Calculated using...)
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to low light180Low DIC/High pH217177575120147150.260.0912.40.61370700.00950.0002310.17715158.00323.70324.8892.291474.691621.151.442.260.690.05375338.200.038.60.822801920641714118962215410
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to low light180High DIC/High pH236346395819156430.280.1122.00.82500900.00950.0002310.17715158.01574.31576.39173.222695.222914.462.704.240.690.05375338.200.038.60.822801920641714118962215410
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to low light180Low DIC/Low pH2716326172214925290.900.1124.01.51420800.01840.0003310.17715157.73626.52628.7951.231495.231563.580.801.250.690.05375338.200.038.60.822801920641714118962215410
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to low light180High DIC/Low pH34522428303281190.960.0343.71.825901100.01840.0003310.17715157.731140.791144.9393.602727.302818.371.462.290.690.05375338.200.038.60.822801920641714118962215410
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to low light700Low DIC/High pH3275591059123910.200.0812.40.61370700.00950.0002310.17715158.00323.70324.8892.291474.691621.151.442.260.690.05375338.200.038.60.822801920641714118962215410
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to low light700High DIC/High pH35519572078124510.240.1522.00.82500900.00950.0002310.17715158.01574.31576.39173.222695.222914.462.704.240.690.05375338.200.038.60.822801920641714118962215410
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to low light700Low DIC/Low pH36569271422616410.760.2324.01.51420800.01840.0003310.17715157.73626.52628.7951.231495.231563.580.801.250.690.05375338.200.038.60.822801920641714118962215410
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to low light700High DIC/Low pH4644846739312910.930.0643.71.825901100.01840.0003310.17715157.731140.791144.9393.602727.302818.371.462.290.690.05375338.200.038.60.822801920641714118962215410
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to high light180Low DIC/High pH1811472212339141400.140.2513.60.915601100.00910.0003310.17715158.02355.03356.32109.111682.711846.721.702.671.130.05376228.200.028.50.522881120724141190381558
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to high light180High DIC/High pH1412658321796150.250.1322.71.027301300.00890.0003310.17715158.04592.58594.73200.192952.893201.403.124.901.130.05376228.200.028.50.522881120724141190381558
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to high light180Low DIC/Low pH310.177151.130.05376228.200.028.50.522881120724141190381558
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to high light180High DIC/Low pH12428673773635160.670.1747.42.027301100.01880.0003310.17715157.721237.381241.8795.872873.272962.031.492.341.130.05376228.200.028.50.522881120724141190381558
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to high light700Low DIC/High pH3603080115677271680.170.2213.60.915601100.00910.0003310.17715158.02355.03356.32109.111682.711846.721.702.671.130.05376228.200.028.50.522881120724141190381558
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to high light700High DIC/High pH3074064175518224230.190.0522.71.027301300.00890.0003310.17715158.04592.58594.73200.192952.893201.403.124.901.130.05376228.200.028.50.522881120724141190381558
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to high light700Low DIC/Low pH310.177151.130.05376228.200.028.50.522881120724141190381558
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgdiploid life-cycle stage acclimated to high light700High DIC/Low pH225326049346129180.400.1747.42.027301100.01880.0003310.17715157.721237.381241.8795.872873.272962.031.492.341.130.05376228.200.028.50.522881120724141190381558
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to low light180Low DIC/High pH1472238818131140.000.0610.60.51200500.00920.0001310.17715158.01276.71277.7282.831293.431433.481.292.030.680.0534038.250.007.60.12352321081130192111741
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to low light180High DIC/High pH173692972826129390.150.1020.50.32400300.00920.0001310.17715158.02535.15537.09171.322591.822812.222.674.190.680.0534038.250.007.60.12352321081130192111741
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to low light180Low DIC/Low pH2022956125816126190.310.0717.10.51050300.01740.0005310.17715157.74446.40448.0139.311106.411170.940.610.960.680.0534038.250.007.60.12352321081130192111741
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to low light180High DIC/Low pH185792935583113170.240.3340.92.824601600.01810.0000310.17715157.731067.701071.5790.222591.122682.081.402.210.680.0534038.250.007.60.12352321081130192111741
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to low light700Low DIC/High pH22332354-68207230.030.0410.60.51200500.00920.0001310.17715158.01276.71277.7282.831293.431433.481.292.030.680.0534038.250.007.60.12352321081130192111741
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to low light700High DIC/High pH24056295721210410.020.0920.50.32400300.00920.0001310.17715158.02535.15537.09171.322591.822812.222.674.190.680.0534038.250.007.60.12352321081130192111741
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to low light700Low DIC/Low pH2862348112617225250.110.0717.10.51050300.01740.0005310.17715157.74446.40448.0139.311106.411170.940.610.960.680.0534038.250.007.60.12352321081130192111741
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to low light700High DIC/Low pH273233243852210370.140.1940.92.824601600.01810.0000310.17715157.731067.701071.5790.222591.122682.081.402.210.680.0534038.250.007.60.12352321081130192111741
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to high light180Low DIC/High pH11913694-33714111-0.310.0910.50.61150700.00930.0001310.17715158.00274.10275.1076.801237.301369.721.201.881.100.07343178.240.027.70.32349821073131192291737
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to high light180High DIC/High pH11336548-12261146-0.180.3018.61.421601300.00920.0001310.17715158.02485.55487.31152.952331.552535.042.383.741.100.07343178.240.027.70.32349821073131192291737
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to high light180Low DIC/Low pH136196719017124240.000.1417.91.810901200.01750.0004310.17715157.74467.28468.9740.471148.371212.990.630.991.100.07343178.240.027.70.32349821073131192291737
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to high light180High DIC/Low pH148347920-201715444-0.140.1032.52.519402000.01810.0005310.17715157.73848.41851.4970.612043.112122.621.101.731.100.07343178.240.027.70.32349821073131192291737
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to high light700Low DIC/High pH24613688-38102616-0.170.0510.50.61150700.00930.0001310.17715158.00274.10275.1076.801237.301369.721.201.881.100.07343178.240.027.70.32349821073131192291737
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to high light700High DIC/High pH19633559-292420724-0.180.1518.61.421601300.00920.0001310.17715158.02485.55487.31152.952331.552535.042.383.741.100.07343178.240.027.70.32349821073131192291737
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to high light700Low DIC/Low pH23625568-5820833-0.020.0317.91.810901200.01750.0004310.17715157.74467.28468.9740.471148.371212.990.630.991.100.07343178.240.027.70.32349821073131192291737
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orghaploid life-cycle stage acclimated to high light700High DIC/Low pH27468759-23227260-0.100.0332.52.519402000.01810.0005310.17715157.73848.41851.4970.612043.112122.621.101.731.100.07343178.240.027.70.32349821073131192291737