Horn, Hannes; Hentschel, Ute; Abdelmohsen, Usama Ramadan (2015): Individual codes, GenBank accession numbers and GenBank accession links for sponge-associated actinobacterial isolates [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.855522, Supplement to: Horn, H et al. (2015): Mining Genomes of Three Marine Sponge-Associated Actinobacterial Isolates for Secondary Metabolism. Genome Announcements, 3(5), e01106-15, https://doi.org/10.1128/genomeA.01106-15
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Abstract:
Here, we report the draft genome sequences of three actinobacterial isolates, Micromonospora sp. RV43, Rubrobacter sp. RV113, and Nocardiopsis sp. RV163 that had previously been isolated from Mediterranean sponges. The draft genomes were analyzed for the presence of gene clusters indicative of secondary metabolism using antiSMASH 3.0 and NapDos pipelines. Our findings demonstrated the chemical richness of sponge-associated actinomycetes and the efficacy of genome mining in exploring the genomic potential of sponge-derived actinomycetes.
Coverage:
Latitude: 45.081000 * Longitude: 13.638000
Date/Time Start: 2008-08-01T00:00:00 * Date/Time End: 2008-08-01T00:00:00
Event(s):
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Date/Time of event | Date/Time | ||||
| 2 | Latitude of event | Latitude | ||||
| 3 | Longitude of event | Longitude | ||||
| 4 | Depth, top/min | Depth top | m | Horn, Hannes | ||
| 5 | Depth, bottom/max | Depth bot | m | Horn, Hannes | ||
| 6 | Species code | Spec code | Horn, Hannes | |||
| 7 | Species | Species | Horn, Hannes | |||
| 8 | Accession number | Access No | Horn, Hannes | GenBank | ||
| 9 | Accession number, link | Access URL | Horn, Hannes | GenBank | ||
| 10 | Area/locality | Area | Horn, Hannes |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
21 data points
Data
| 1 Date/Time | 2 Latitude | 3 Longitude | 4 Depth top [m] | 5 Depth bot [m] | 6 Spec code | 7 Species | 8 Access No | 9 Access URL | 10 Area |
|---|---|---|---|---|---|---|---|---|---|
| 2008-08-01 | 45.0810 | 13.6380 | 3 | 20 | RV43 | Micromonospora sp. RV43 | LEKG00000000.1 | ncbi.nlm.nih.gov | Rovinj, Croatia |
| 2008-08-01 | 45.0810 | 13.6380 | 3 | 20 | RV113 | Rubrobacter sp. RV113 | LEKH00000000.1 | ncbi.nlm.nih.gov | Rovinj, Croatia |
| 2008-08-01 | 45.0810 | 13.6380 | 3 | 20 | RV163 | Nocardiopsis sp. RV163 | LEKI00000000.1 | ncbi.nlm.nih.gov | Rovinj, Croatia |