Horn, Hannes; Cheng, Cheng; Edrada-Ebel, RuAngelie; Hentschel, Ute; Abdelmohsen, Usama Ramadan (2015): Individual codes, GenBank accession numbers and GenBank accession links for Mediterranean sponges [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.855521, Supplement to: Horn, H et al. (2015): Draft genome sequences of three chemically rich actinomycetes isolated from Mediterranean sponges. Marine Genomics, https://doi.org/10.1016/j.margen.2015.10.003
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Abstract:
Metabolomic analysis has shown the chemical richness of the sponge-associated actinomycetes Streptomyces sp. SBT349, Nonomureae sp. SBT364, and Nocardiopsis sp. SBT366. The genomes of these actinomycetes were sequenced and the genomic potential for secondary metabolism was evaluated. Their draft genomes have sizes of 8.0, 10, and 5.8Mb having 687, 367, and 179 contigs with a GC content of 71.6, 70.7, and 72.7%, respectively. Moreover, antiSMASH 3.0 predicted 108, 149, and 75 secondary metabolite gene clusters, respectively which highlight the metabolic capacity of the three actinomycete species to produce diverse classes of natural products.
Coverage:
Latitude: 36.770000 * Longitude: 24.520000
Date/Time Start: 2013-05-29T00:00:00 * Date/Time End: 2013-05-29T00:00:00
Minimum Elevation: -7.0 m * Maximum Elevation: -5.0 m
Event(s):
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Date/Time of event | Date/Time | ||||
| 2 | Latitude of event | Latitude | ||||
| 3 | Longitude of event | Longitude | ||||
| 4 | Depth, top/min | Depth top | m | Horn, Hannes | ||
| 5 | Depth, bottom/max | Depth bot | m | Horn, Hannes | ||
| 6 | Sample code/label | Sample label | Horn, Hannes | |||
| 7 | Species code | Spec code | Horn, Hannes | |||
| 8 | Accession number | Access No | Horn, Hannes | GenBank | ||
| 9 | Accession number, link | Access URL | Horn, Hannes | GenBank | ||
| 10 | Area/locality | Area | Horn, Hannes |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
21 data points
Data
| 1 Date/Time | 2 Latitude | 3 Longitude | 4 Depth top [m] | 5 Depth bot [m] | 6 Sample label | 7 Spec code | 8 Access No | 9 Access URL | 10 Area |
|---|---|---|---|---|---|---|---|---|---|
| 2013-05-29 | 36.7700 | 24.5200 | 5 | 7 | SBT349 | Streptomyces sp. SBT349 | LAVK00000000.1 | ncbi.nlm.nih.gov | Milos, Greece |
| 2013-05-29 | 36.7700 | 24.5200 | 5 | 7 | SBT364 | Nonomureae sp. SBT364 | LAVL00000000.1 | ncbi.nlm.nih.gov | Milos, Greece |
| 2013-05-29 | 36.7700 | 24.5200 | 5 | 7 | SBT366 | Nocardiopsis sp. SBT366 | LAVM00000000.1 | ncbi.nlm.nih.gov | Milos, Greece |