Citation:

PANGAEA.847795

Name: Ocean acidification decreases the light-use efficiency in an Antarctic diatom under dynamic but not constant light
Published: 2015-07-07
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Antarctic; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Chaetoceros debilis; Chromista; Growth/Morphology; Laboratory experiment; Laboratory strains; Light; Ochrophyta; Pelagos; Phytoplankton; Primary production/Photosynthesis; Single species

Always quote citation above when using data! You can download the citation in several formats below.

RIS Citation BibTeX Citation Text Citation Facebook Twitter

Keyword(s):

Antarctic; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Chaetoceros debilis; Chromista; Growth/Morphology; Laboratory experiment; Laboratory strains; Light; Ochrophyta; Pelagos; Phytoplankton; Primary production/Photosynthesis; Single species

Related to:

Hoppe, Clara Jule Marie; Holtz, Lena-Maria; Trimborn, Scarlett; Rost, Björn (2015): Ocean acidification decreases the light-use efficiency in an Antarctic diatom under dynamic but not constant light. New Phytologist, 207(1), 159-171, https://doi.org/10.1111/nph.13334

Original version:

Hoppe, Clara Jule Marie; Holtz, Lena-Maria; Trimborn, Scarlett; Rost, Björn (2015): Ocean acidification decreases the light-use efficiency in an Antarctic diatom under dynamic but not constant light, link to supplementary data. PANGAEA, https://doi.org/10.1594/PANGAEA.842808

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse (2015): seacarb: seawater carbonate chemistry with R. R package version 3.0.6. https://cran.r-project.org/package=seacarb

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2015) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2015-07-03.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Species	Species		Hoppe, Clara Jule Marie
2	Light mode	L mode		Hoppe, Clara Jule Marie
3	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Hoppe, Clara Jule Marie		treatment
4	Replicate	Repl		Hoppe, Clara Jule Marie
5	Growth rate	µ	1/day	Hoppe, Clara Jule Marie
6	Chlorophyll a per cell	Chl a/cell	pg/#	Hoppe, Clara Jule Marie
7	Carbon, organic, particulate, per cell	POC/cell	pg/#	Hoppe, Clara Jule Marie
8	Nitrogen, organic, particulate, per cell	PON/cell	pg/#	Hoppe, Clara Jule Marie
9	Biogenic silica, per cell	bSiO2/cell	µg/#	Hoppe, Clara Jule Marie
10	Chlorophyll a production per cell	Chl a prod/cell	pg/#/day	Hoppe, Clara Jule Marie
11	Carbon, organic, particulate, production per cell	POC prod/cell	pg/#/day	Hoppe, Clara Jule Marie
12	Production of particulate organic nitrogen	PON prod	pg/#/day	Hoppe, Clara Jule Marie
13	Biogenic silica production per cell	bSiO2 prod/cell	pg/#/day	Hoppe, Clara Jule Marie
14	Carbon, organic, particulate/Nitrogen, organic, particulate ratio	POC/PON		Hoppe, Clara Jule Marie
15	Chlorophyll a/particulate organic carbon ratio	Chl a/POC		Hoppe, Clara Jule Marie
16	Non photochemical quenching	NPQ		Hoppe, Clara Jule Marie		at 490 at µE/m**2/s
17	Non photochemical quenching	NPQ		Hoppe, Clara Jule Marie		maximal
18	Electron transport rate per chlorophyll a	ETR/Chl a	µmol e/µmol/min	Hoppe, Clara Jule Marie
19	Light saturation point	Ik	µmol/m²/s	Hoppe, Clara Jule Marie
20	Photosynthetic efficiency per chlorophyll a	alpha/Chl a	mol e/(E/m²)/mol	Hoppe, Clara Jule Marie
21	Electron transport rate per chlorophyll a per day	ETR/Chl a	mol e/mol/day	Hoppe, Clara Jule Marie
22	Net primary production of carbon per chlorophyll a	NPP C/Chl a	mol/mol/day	Hoppe, Clara Jule Marie
23	Energy transfer efficiency per carbon	phi_eC	mol e/mol	Hoppe, Clara Jule Marie
24	Salinity	Sal		Hoppe, Clara Jule Marie
25	Temperature, water	Temp	°C	Hoppe, Clara Jule Marie
26	Carbon, inorganic, dissolved	DIC	µmol/kg	Hoppe, Clara Jule Marie	Coulometric titration
27	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Hoppe, Clara Jule Marie	Coulometric titration
28	Alkalinity, total	AT	µmol/kg	Hoppe, Clara Jule Marie	Potentiometric titration
29	Alkalinity, total, standard deviation	AT std dev	±	Hoppe, Clara Jule Marie	Potentiometric titration
30	pH	pH		Hoppe, Clara Jule Marie	Potentiometric	total scale
31	pH, standard deviation	pH std dev	±	Hoppe, Clara Jule Marie	Potentiometric	total scale
32	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Hoppe, Clara Jule Marie	Calculated using CO2SYS
33	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Hoppe, Clara Jule Marie	Calculated using CO2SYS
34	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
35	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
36	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
37	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
38	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
39	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
40	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
41	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
42	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

780 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Species	2 L mode	3 pCO2water_SST_wet [µatm] (treatment)	4 Repl	5 µ [1/day]	6 Chl a/cell [pg/#]	7 POC/cell [pg/#]	8 PON/cell [pg/#]	9 bSiO2/cell [µg/#]	10 Chl a prod/cell [pg/#/day]	11 POC prod/cell [pg/#/day]	12 PON prod [pg/#/day]	13 bSiO2 prod/cell [pg/#/day]	14 POC/PON	15 Chl a/POC	16 NPQ (at 490 at µE/m**2/s)	17 NPQ (maximal)	18 ETR/Chl a [µmol e/µmol/min]	19 Ik [µmol/m²/s]	20 alpha/Chl a [mol e/(E/m²)/mol]	21 ETR/Chl a [mol e/mol/day]	22 NPP C/Chl a [mol/mol/day]	23 phi_eC [mol e/mol]	24 Sal	25 Temp [°C]	26 DIC [µmol/kg] (Coulometric titration)	27 DIC std dev [±] (Coulometric titration)	28 AT [µmol/kg] (Potentiometric titration)	29 AT std dev [±] (Potentiometric titration)	30 pH (total scale, Potentiometric)	31 pH std dev [±] (total scale, Potentiometric)	32 pCO2water_SST_wet [µatm] (Calculated using CO2SYS)	33 pCO2 std dev [±] (Calculated using CO2SYS)	34 CSC flag (Calculated using seacarb afte...)	35 CO2 [µmol/kg] (Calculated using seacarb afte...)	36 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	37 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	38 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	39 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	40 DIC [µmol/kg] (Calculated using seacarb afte...)	41 Omega Arg (Calculated using seacarb afte...)	42 Omega Cal (Calculated using seacarb afte...)
Chaetoceros debilis (phytoplankton)	constant	390	A	0.49	0.69	41.07	7.94	54.39	0.37	21.64	4.18	28.67	5.17	59.18									34	3	2092	15	2250	27	8.05	0.02	382	18	8	21.37	378.77	380.37	1994.64	101.12	2117.12	1.53	2.43
Chaetoceros debilis (phytoplankton)	constant	390	B	0.54	0.61	35.95	7.89	56.52	0.32	18.94	4.16	29.78	4.55	58.73									34	3	2092	15	2250	27	8.05	0.02	382	18	8	21.37	378.77	380.37	1994.64	101.12	2117.12	1.53	2.43
Chaetoceros debilis (phytoplankton)	constant	390	C	0.55	0.66	44.46	7.24	54.70	0.35	23.43	3.82	28.83	6.14	67.09									34	3	2092	15	2250	27	8.05	0.02	382	18	8	21.37	378.77	380.37	1994.64	101.12	2117.12	1.53	2.43
Chaetoceros debilis (phytoplankton)	constant	1000	A	0.53	0.68	48.42	7.52	42.39	0.32	26.97	4.19	23.61	6.43	71.22									34	3	2202	29	2258	18	7.66	0.03	987	28	8	56.43	1000.30	1004.55	2145.96	44.32	2246.72	0.67	1.07
Chaetoceros debilis (phytoplankton)	constant	1000	B	0.59	0.66	41.59	6.96	38.76	0.37	23.17	3.88	21.59	5.98	62.72									34	3	2202	29	2258	18	7.66	0.03	987	28	8	56.43	1000.30	1004.55	2145.96	44.32	2246.72	0.67	1.07
Chaetoceros debilis (phytoplankton)	constant	1000	C	0.55	0.57	40.97	5.78	44.46	0.38	22.82	3.22	24.76	7.09	71.57									34	3	2202	29	2258	18	7.66	0.03	987	28	8	56.43	1000.30	1004.55	2145.96	44.32	2246.72	0.67	1.07
Chaetoceros debilis (phytoplankton)	dynamic	390	A	0.42	0.68	37.95	7.12	41.84	0.29	16.55	3.11	18.25	5.33	56.14									34	3	2101	27	2263	33	8.03	0.02	400	17	8	22.62	401.01	402.71	2016.70	97.63	2136.96	1.48	2.35
Chaetoceros debilis (phytoplankton)	dynamic	390	B	0.45	0.71	47.60	8.65	50.83	0.31	20.76	3.77	22.17	5.51	66.93									34	3	2101	27	2263	33	8.03	0.02	400	17	8	22.62	401.01	402.71	2016.70	97.63	2136.96	1.48	2.35
Chaetoceros debilis (phytoplankton)	dynamic	390	C	0.44	0.76	44.28	8.06	49.63	0.33	19.31	3.52	21.64	5.49	58.24									34	3	2101	27	2263	33	8.03	0.02	400	17	8	22.62	401.01	402.71	2016.70	97.63	2136.96	1.48	2.35
Chaetoceros debilis (phytoplankton)	dynamic	1000	A	0.43	0.41	25.46	4.65	40.81	0.17	10.60	1.94	16.99	5.48	61.39									34	3	2203	25	2252	27	7.65	0.02	1026	31	8	57.66	1022.01	1026.35	2142.62	43.24	2243.52	0.65	1.04
Chaetoceros debilis (phytoplankton)	dynamic	1000	B	0.38	0.50	33.58	6.10	39.86	0.21	13.98	2.54	16.60	5.50	67.71									34	3	2203	25	2252	27	7.65	0.02	1026	31	8	57.66	1022.01	1026.35	2142.62	43.24	2243.52	0.65	1.04
Chaetoceros debilis (phytoplankton)	dynamic	1000	C	0.43	0.45	33.67	6.20	38.56	0.19	14.02	2.58	16.05	5.43	74.50									34	3	2203	25	2252	27	7.65	0.02	1026	31	8	57.66	1022.01	1026.35	2142.62	43.24	2243.52	0.65	1.04
Chaetoceros debilis (phytoplankton)	constant	390	A												1.22	1.65	7.86	119	0.07	4118	1475	4.76	34	3	2092	15	2250	27	8.05	0.02	382	18	8	21.37	378.77	380.37	1994.64	101.12	2117.12	1.53	2.43
Chaetoceros debilis (phytoplankton)	constant	390	B												0.85	1.39	7.21	131	0.06	3632	1481	5.19	34	3	2092	15	2250	27	8.05	0.02	382	18	8	21.37	378.77	380.37	1994.64	101.12	2117.12	1.53	2.43
Chaetoceros debilis (phytoplankton)	constant	390	C												1.46	1.87	9.85	165	0.06	4754	1264	5.27	34	3	2092	15	2250	27	8.05	0.02	382	18	8	21.37	378.77	380.37	1994.64	101.12	2117.12	1.53	2.43
Chaetoceros debilis (phytoplankton)	constant	1000	A												1.00	1.61	8.35	122	0.07	4310	1510	5.19	34	3	2202	29	2258	18	7.66	0.03	987	28	8	56.43	1000.30	1004.55	2145.96	44.32	2246.72	0.67	1.07
Chaetoceros debilis (phytoplankton)	constant	1000	B												1.08	1.79	10.10	118	0.09	4494	1955	5.64	34	3	2202	29	2258	18	7.66	0.03	987	28	8	56.43	1000.30	1004.55	2145.96	44.32	2246.72	0.67	1.07
Chaetoceros debilis (phytoplankton)	constant	1000	C												1.21	1.99	9.88	149	0.07	4501	1563	4.96	34	3	2202	29	2258	18	7.66	0.03	987	28	8	56.43	1000.30	1004.55	2145.96	44.32	2246.72	0.67	1.07
Chaetoceros debilis (phytoplankton)	dynamic	390	A												1.14	1.92	13.14	132	0.10	4886	1080	6.84	34	3	2101	27	2263	33	8.03	0.02	400	17	8	22.62	401.01	402.71	2016.70	97.63	2136.96	1.48	2.35
Chaetoceros debilis (phytoplankton)	dynamic	390	B												0.84	1.60	11.59	148	0.08	4097	1100	7.24	34	3	2101	27	2263	33	8.03	0.02	400	17	8	22.62	401.01	402.71	2016.70	97.63	2136.96	1.48	2.35
Chaetoceros debilis (phytoplankton)	dynamic	390	C												0.60	1.34	11.39	148	0.08	4056	1295	8.50	34	3	2101	27	2263	33	8.03	0.02	400	17	8	22.62	401.01	402.71	2016.70	97.63	2136.96	1.48	2.35
Chaetoceros debilis (phytoplankton)	dynamic	1000	A												1.00	1.81	14.94	140	0.11	5272	1060	8.26	34	3	2203	25	2252	27	7.65	0.02	1026	31	8	57.66	1022.01	1026.35	2142.62	43.24	2243.52	0.65	1.04
Chaetoceros debilis (phytoplankton)	dynamic	1000	B												0.82	1.67	16.50	141	0.12	5640	903	9.88	34	3	2203	25	2252	27	7.65	0.02	1026	31	8	57.66	1022.01	1026.35	2142.62	43.24	2243.52	0.65	1.04
Chaetoceros debilis (phytoplankton)	dynamic	1000	C												0.70	1.32	16.33	150	0.11	5377	777	12.37	34	3	2203	25	2252	27	7.65	0.02	1026	31	8	57.66	1022.01	1026.35	2142.62	43.24	2243.52	0.65	1.04