Domaschke, Stephanie; Fernández-Mendoza, Fernando; García, Miguel Ángel; Martín, María; Printzen, Christian (2012): (Table 4) Number of individuals and haplotypes, and haplotype and nucleotide diversity of photobiont ITS, COX2 and Actin sequences in the lichen Cetraria aculeata [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.847601, In supplement to: Domaschke, S et al. (2012): Low genetic diversity in Antarctic populations of the lichen-forming ascomycete Cetraria aculeata and its photobiont. Polar Research, 31, 17353, https://doi.org/10.3402/polar.v31i0.17353
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Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Province | Province | Domaschke, Stephanie | |||
| 2 | Gene name | Gene | Domaschke, Stephanie | |||
| 3 | Number of individuals | Ind No | # | Domaschke, Stephanie | ||
| 4 | Number of all haplotypes | Ht | # | Domaschke, Stephanie | ||
| 5 | Number of all haplotypes | Ht | # | Domaschke, Stephanie | Chao richness estimator (Chao 1984, Colwell & Coddington 1994) | estimated following Chao 1 |
| 6 | Number of all haplotypes | Ht | # | Domaschke, Stephanie | Chao richness estimator (Chao 1984, Colwell & Coddington 1994) | estimated following Chao 2 |
| 7 | Diversity description | Diversity | Domaschke, Stephanie | no. of haplotypes per single population | ||
| 8 | Haplotype diversity | h | Domaschke, Stephanie | |||
| 9 | Nucleotide diversity | pi | Domaschke, Stephanie |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
108 data points
Data
| 1 Province | 2 Gene | 3 Ind No [#] | 4 Ht [#] | 5 Ht [#] (estimated following Chao 1) | 6 Ht [#] (estimated following Chao 2) | 7 Diversity (no. of haplotypes per single ...) | 8 h | 9 pi |
|---|---|---|---|---|---|---|---|---|
| Arctic | ITS | 71 | 14 | 32.0 | 38.8 | 2-8 | 0.632 | 0.01538 |
| Temperate | ITS | 55 | 12 | 19.5 | 22.0 | 3-7 | 0.820 | 0.02233 |
| Antiboreal | ITS | 37 | 11 | 21.5 | 17.0 | 6-7 | 0.799 | 0.00684 |
| Antarctic | ITS | 56 | 3 | 3.0 | 3.0 | 2-3 | 0.455 | 0.00082 |
| Arctic | COX2 | 38 | 4 | 4.0 | 4.0 | 1-4 | 0.670 | 0.00295 |
| Temperate | COX2 | 30 | 3 | 4.0 | 4.2 | 1-3 | 0.618 | 0.00486 |
| Antiboreal | COX2 | 21 | 3 | 3.0 | 4.5 | 1-2 | 0.571 | 0.00130 |
| Antarctic | COX2 | 21 | 1 | 1.0 | 1.0 | 1 | 0.000 | 0.00000 |
| Arctic | Actln | 25 | 9 | 11.0 | 10.9 | 2-4 | 0.753 | 0.01237 |
| Temperate | Actln | 45 | 13 | 23.5 | 25.2 | 1-8 | 0.817 | 0.07633 |
| Antiboreal | Actln | 24 | 6 | 12.0 | 8.5 | 3-4 | 0.703 | 0.01270 |
| Antarctic | Actln | 44 | 2 | 2.0 | 2.0 | 1-2 | 0.474 | 0.00332 |