Domaschke, Stephanie; Fernández-Mendoza, Fernando; García, Miguel Ángel; Martín, María; Printzen, Christian (2012): (Table 3) Number of individuals and haplotypes, and haplotype and nucleotide diversity of mycobiont ITS, GPD and mtLSU sequences in the lichen Cetraria aculeata [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.847599, In supplement to: Domaschke, S et al. (2012): Low genetic diversity in Antarctic populations of the lichen-forming ascomycete Cetraria aculeata and its photobiont. Polar Research, 31, 17353, https://doi.org/10.3402/polar.v31i0.17353
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Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Province | Province | Domaschke, Stephanie | |||
| 2 | Gene name | Gene | Domaschke, Stephanie | |||
| 3 | Number of individuals | Ind No | # | Domaschke, Stephanie | ||
| 4 | Number of all haplotypes | Ht | # | Domaschke, Stephanie | ||
| 5 | Number of all haplotypes | Ht | # | Domaschke, Stephanie | Chao richness estimator (Chao 1984, Colwell & Coddington 1994) | estimated following Chao 1 |
| 6 | Number of all haplotypes | Ht | # | Domaschke, Stephanie | Chao richness estimator (Chao 1984, Colwell & Coddington 1994) | estimated following Chao 2 |
| 7 | Diversity description | Diversity | Domaschke, Stephanie | no. of haplotypes per single population | ||
| 8 | Haplotype diversity | h | Domaschke, Stephanie | |||
| 9 | Nucleotide diversity | pi | Domaschke, Stephanie |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
108 data points
Data
| 1 Province | 2 Gene | 3 Ind No [#] | 4 Ht [#] | 5 Ht [#] (estimated following Chao 1) | 6 Ht [#] (estimated following Chao 2) | 7 Diversity (no. of haplotypes per single ...) | 8 h | 9 pi |
|---|---|---|---|---|---|---|---|---|
| Arctic | ITS | 68 | 17 | 18.3 | 21.8 | 4-8 | 0.909 | 0.01432 |
| Temperate | ITS | 47 | 7 | 17.0 | 12.0 | 1-5 | 0.566 | 0.00130 |
| Antiboreal | ITS | 33 | 4 | 4.0 | 4.2 | 3 | 0.532 | 0.00167 |
| Antarctic | ITS | 52 | 2 | 2.0 | 2.0 | 1 -2 | 0.038 | 0.00008 |
| Arctic | GPD | 43 | 6 | 7.0 | 6.2 | 3-5 | 0.722 | 0.01342 |
| Temperate | GPD | 36 | 3 | 4.0 | 3.7 | 2-3 | 0.160 | 0.00317 |
| Antiboreal | GPD | 24 | 2 | 2.0 | 2.0 | 2 | 0.228 | 0.00042 |
| Antarctic | GPD | 21 | 2 | 2.0 | 2.0 | 1 -2 | 0.095 | 0.00017 |
| Arctic | mtLSU | 46 | 6 | 7.0 | 13.5 | 2-3 | 0.609 | 0.00077 |
| Temperate | mtLSU | 43 | 5 | 12.0 | 9.3 | 1 -5 | 0.179 | 0.00128 |
| Antiboreal | mtLSU | 20 | 2 | 2.0 | 2.0 | 2 | 0.395 | 0.00096 |
| Antarctic | mtLSU | 51 | 1 | 1.0 | 1.0 | 1 | 0.000 | 0.00000 |