Citation:

PANGAEA.859953

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Replaced by:

Pesant, Stephane; Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2017): Methodology used on board to prepare samples from the Tara Oceans Expedition (2009-2013). PANGAEA, https://doi.org/10.1594/PANGAEA.875580

Abstract:

The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set is a registry of all samples collected during the Tara Oceans Expedition (2009-2013). The registry provides details about the sampling location and methodology of each sample. Uniform resource locators (URLs) offer direct links to additional contextual environmental data published at PANGAEA, and to the corresponding nucleotides data published at the European Nucleotides Archive (EBI-ENA).

Related to:

Pesant, Stephane; Tara Oceans Consortium, Coordinators; et al. (in prep.): Methodological and environmental context of Tara Oceans samples. Scientific Data

Project(s):

Fondation Tara Expeditions (FondTara)

Tara Oceans Expedition (Tara_Oceans_2009-2013)

Coverage:

Median Latitude: 2.808888 * Median Longitude: -43.598006 * South-bound Latitude: -64.382200 * West-bound Longitude: -168.550100 * North-bound Latitude: 79.673200 * East-bound Longitude: 174.991700

Date/Time Start: 2009-09-07T15:30:00 * Date/Time End: 2013-10-27T21:38:00

Event(s):

TARA_2009-2013_EVENT_unknown * Date/Time Start: 2009-09-05T00:00:00 * Date/Time End: 2013-12-06T00:00:00 * Comment: This event is used to describe a few samples for which the sampling event is unknown

TARA_20090907T1530Z_001_EVENT_NET ([day] [water layer with no specific feature]) * Latitude: 44.401300 * Longitude: -9.827300 * Date/Time: 2009-09-07T15:30:00 * Campaign: (Lorient to Lisbon, Stations: TARA_001-002) * Basis: SV Tara * Method/Device: Plankton net, type=Bongo, mesh(µm)=300, mouth(m^2)=0.258319, length(m)=3 ([NET-BONGO-300])

TARA_20090907T1610Z_001_EVENT_NET ([day] [surface water layer (ENVO:00002042)]) * Latitude: 44.401300 * Longitude: -9.827300 * Date/Time: 2009-09-07T16:10:00 * Campaign: (Lorient to Lisbon, Stations: TARA_001-002) * Basis: SV Tara * Method/Device: Plankton net+sieve, type=Double, mesh(µm)=20, mouth(m^2)=0.192442, length(m)=2.5 ([NET-DOUBLE-20]+[SIEVE-180])

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Sample ID	Sample ID		Pesant, Stephane		TARA_barcode#
2	Basis of event	Basis		Pesant, Stephane
3	Campaign of event	Campaign		Pesant, Stephane
4	Station label	Station		Pesant, Stephane		TARA_station#
5	Event label	Event		Pesant, Stephane
6	Optional event label	Event 2		Pesant, Stephane
7	Method/Device of event	Method/Device		Pesant, Stephane
8	Date/Time of event	Date/Time		Pesant, Stephane
9	Latitude of event	Latitude		Pesant, Stephane
10	Longitude of event	Longitude		Pesant, Stephane
11	Date/Time of event 2	Date/Time 2		Pesant, Stephane
12	Latitude of event 2	Latitude 2		Pesant, Stephane
13	Longitude of event 2	Longitude 2		Pesant, Stephane
14	Environmental feature	Env feature		Pesant, Stephane		abbreviation
15	Environmental feature	Env feature		Pesant, Stephane	terms registered at EnvO, the Environmental Ontology	full name (ENVO:ID)
16	Environmental feature	Env feature		Pesant, Stephane		complementary
17	Depth, top/min	Depth top	m	Pesant, Stephane		of the environmental feature
18	Depth, bottom/max	Depth bot	m	Pesant, Stephane		of the environmental feature
19	Depth, nominal	Depth nominal		Pesant, Stephane		of the environmental feature
20	Sample material	Samp mat		Pesant, Stephane
21	Description	Description		Pesant, Stephane		TARA_event-datetime_station#_event-type_environmental-feature_(depth)_protocol-label_size-fraction_sample-barcode
22	Description	Description		Pesant, Stephane		TARA_station#_environmental-feature_protocol-label_size-fraction
23	Sample code/label	Sample label		Pesant, Stephane		of replicate samples
24	Sample code/label	Sample label		Pesant, Stephane		of subsamples, i.e. when the sample material was split into several containers
25	Sample code/label	Sample label		Pesant, Stephane		INSDC sample accession number
26	Accession number, genetics	Access no gen		Pesant, Stephane	published at the European Nucleotides Archive	of related biomolecular data
27	Uniform resource locator/link to reference	URL ref		Pesant, Stephane	published at PANGAEA, Data Publisher for Earth and Environmental Science	of related contextual data
28	Uniform resource locator/link to metadata file	URL meta		Pesant, Stephane	published at PANGAEA, Data Publisher for Earth and Environmental Science	of the event logsheet (pdf) where this sample was recorded
29	Uniform resource locator/link to metadata file	URL meta		Pesant, Stephane	published at PANGAEA, Data Publisher for Earth and Environmental Science	of the wetlab logsheet (pdf) where this sample was recorded
30	Uniform resource locator/link to metadata file	URL meta		Pesant, Stephane	published at PANGAEA, Data Publisher for Earth and Environmental Science	of the drylab logsheet (pdf) where this sample was recorded
31	Sample method	Sample method		Pesant, Stephane		label
32	Sample method	Sample method		Pesant, Stephane		operator
33	Sample method	Sample method		Pesant, Stephane		lower threshold (in micrometres) of the size fraction
34	Sample method	Sample method		Pesant, Stephane		device used for the lower threshold of the size fraction
35	Sample method	Sample method		Pesant, Stephane		upper threshold (in micrometres) of the size fraction
36	Sample method	Sample method		Pesant, Stephane		device used for the upper threshold of the size fraction
37	Sample method	Sample method		Pesant, Stephane		quantity of sample material to be processed, recommended by the protocol
38	Sample method	Sample method		Pesant, Stephane		chemical treatment of the processed sample, recommended by the protocol
39	Sample method	Sample method		Pesant, Stephane		sample container type (volume), recommended by the protocol
40	Sample method	Sample method		Pesant, Stephane		sample content, recommended by the protocol
41	Sample method	Sample method		Pesant, Stephane		temperature treatment for storage, recommended by the protocol
42	Sample repository	Sample repository		Pesant, Stephane		recommended by the protocol

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Size:

878332 data points

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