Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2014): Registry of selected samples from the Tara Oceans Expedition (2009-2013) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.840721
Always quote citation above when using data! You can download the citation in several formats below.
Alert Replaced by:
Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2015): Environmental context of all samples from the Tara Oceans Expedition (2009-2013), about depth specific features. PANGAEA, https://doi.org/10.1594/PANGAEA.853810
Abstract:
The present data set is a registry of samples from the Tara Oceans Expedition (2009-2013) that were selected for publication in a special issue of the SCIENCE journal (see related references below). The registry provides details about the sampling location and methodology of each sample. Uniform resource locators (URLs) offer direct links to additional contextual environmental data and to the corresponding sequence runs used for analysis in the related literature publications in the SCIENCE journal.
Related to:
Brum, Jennifer R; Ignacio-Espinoza, Julio; Roux, Simon; Doulcier, Guilhem; Acinas, Silvia G; Alberti, Adriana; Chaffron, Samuel; Cruaud, Corinne; De Vargas, Colomban; Gasol, Josep M; Gorsky, G; Gregory, Ann C; Guidi, L; Hingamp, Pascal; Iudicone, Daniele; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stephane; Poulos, Bonnie T; Schwenk, Sarah M; Speich, Sabrina; Dimier, Céline; Kandels-Lewis, Stefanie; Picheral, Marc; Searson, Sarah; Tara Oceans Consortium, Coordinators; Bork, Peer; Bowler, Chris; Sunagawa, Shinichi; Wincker, Patrick; Karsenti, Eric; Sullivan, Matthew B (2015): Patterns and ecological drivers of ocean viral communities. Science, 348(6237), 1261498-1261498, https://doi.org/10.1126/science.1261498
De Vargas, Colomban; Audic, Stephane; Henry, Nicolas; Decelle, Johan; Mahe, Jean-Claude; Logares, Ramiro; Lara, Enrique; Berney, Cédric; Le Bescot, Noan; Probert, Ian; Carmichael, Margaux; Poulain, Julie; Romac, Sarah; Colin, Sébastien; Aury, Jean-Marc; Bittner, Lucie; Chaffron, Samuel; Dunthorn, Micah; Engelen, Stefan; Flegontova, Olga; Guidi, L; Horák, Aleš; Jaillon, Olivier; Lima-Mendez, Gipsi; Lukes, Julius; Malviya, Shruti; Morard, Raphael; Mulot, Matthieu; Scalco, Eleonora; Siano, Raffaele; Vincent, Flora; Zingone, Adriana; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; Tara Oceans Consortium, Coordinators; Acinas, Silvia G; Bork, Peer; Bowler, Chris; Gorsky, G; Grimsley, Nigel; Hingamp, Pascal; Iudicone, Daniele; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stephane; Raes, Jeroen; Sieracki, Michael E; Speich, Sabrina; Stemmann, Lars; Sunagawa, Shinichi; Weissenbach, Jean; Wincker, Patrick; Karsenti, Eric; Boss, Emmanuel; Follows, Michael J; Karp-Boss, Lee; Krzic, Uros; Sardet, Christian; Sullivan, Matthew B; Velayoudon, Didier (2015): Eukaryotic plankton diversity in the sunlit ocean. Science, 348(6237), 1261605-1261605, https://doi.org/10.1126/science.1261605
Lima-Mendez, Gipsi; Faust, Karoline; Henry, Nicolas; Decelle, Johan; Colin, Sébastien; Carcillo, Fabrizio; Chaffron, Samuel; Ignacio-Espinosa, J Cesar; Roux, Simon; Vincent, Flora; Bittner, Lucie; Darzi, Youssef; Wang, Jun; Audic, Stephane; Berline, L; Bontempi, Gianluca; Cabello, Ana María; Coppola, L; Cornejo-Castillo, Francisco M; d'Ovidio, Francesco; De Meester, Luc; Ferrera, Isabel; Garet-Delmas, Marie-José; Guidi, L; Lara, Enrique; Pesant, Stephane; Royo-Llonch, Marta; Salazar, Guillem; Sánchez, Pablo; Sebastian, Marta; Souffreau, Caroline; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; Tara Oceans Consortium, Coordinators; Gorsky, G; Not, Fabrice; Ogata, Hiroyuki; Speich, Sabrina; Stemmann, Lars; Weissenbach, Jean; Wincker, Patrick; Acinas, Silvia G; Sunagawa, Shinichi; Bork, Peer; Sullivan, Matthew B; Karsenti, Eric; Bowler, Chris; De Vargas, Colomban; Raes, Jeroen (2015): Determinants of community structure in the global plankton interactome. Science, 348(6237), 1262073-1262073, https://doi.org/10.1126/science.1262073
Sunagawa, Shinichi; Coelho, Luis Pedro; Chaffron, Samuel; Kultima, Jens Roat; Labadie, Karine; Salazar, Guillem; Djahanschiri, Bardya; Zeller, George; Mende, Daniel R; Alberti, Adriana; Cornejo-Castillo, Francisco M; Costea, Paul I; Cruaud, Corinne; d'Ovidio, Francesco; Engelen, Stefan; Ferrera, Isabel; Gasol, Josep M; Guidi, L; Hildebrand, Falk; Kokoszka, Florian; Lepoivre, Cyrille; Lima-Mendez, Gipsi; Poulain, Julie; Poulos, Bonnie T; Royo-Llonch, Marta; Sarmento, Hugo; Vieira-Silva, Sara; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; Tara Oceans Consortium, Coordinators; Bowler, Chris; De Vargas, Colomban; Gorsky, G; Grimsley, Nigel; Hingamp, Pascal; Iudicone, Daniele; Jaillon, Olivier; Not, Fabrice; Ogata, Hiroyuki; Pesant, Stephane; Speich, Sabrina; Stemmann, Lars; Sullivan, Matthew B; Weissenbach, Jean; Wincker, Patrick; Karsenti, Eric; Raes, Jeroen; Acinas, Silvia G; Bork, Peer; Boss, Emmanuel; Follows, Michael J; Karp-Boss, Lee; Krzic, Uros; Sardet, Christian; Sieracki, Michael E; Velayoudon, Didier (2015): Structure and function of the global ocean microbiome. Science, 348(6237), 1261359-1261359, https://doi.org/10.1126/science.1261359
Villar, Emilie; Farrant, Gregory K; Follows, Michael J; Garczarek, Laurence; Speich, Sabrina; Audic, Stephane; Bittner, Lucie; Blanke, Bruno; Brum, Jennifer R; Brunet, Christian; Casotti, Raffaella; Chase, Alison P; Dolan, John; D'Ortenzio, Fabrizio; Gattuso, Jean-Pierre; Grima, Nicolas; Guidi, L; Hill, Christopher N; Jahn, Oliver; Jamet, Jean-Louis; Le Goff, Hervé; Lepoivre, Cyrille; Malviya, Shruti; Pelletier, Eric; Romagnan, Jean-Baptiste; Roux, Simon; Santini, Sébastien; Scalco, Eleonora; Schwenk, Sarah M; Tanaka, A; Testor, Pierre; Vannier, Thomas; Vincent, Flora; Zingone, Adriana; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; Tara Oceans Consortium, Coordinators; Acinas, Silvia G; Bork, Peer; Boss, Emmanuel; De Vargas, Colomban; Gorsky, G; Ogata, Hiroyuki; Pesant, Stephane; Sullivan, Matthew B; Sunagawa, Shinichi; Wincker, Patrick; Karsenti, Eric; Bowler, Chris; Not, Fabrice; Hingamp, Pascal; Iudicone, Daniele (2015): Environmental characteristics of Agulhas rings affect interocean plankton transport. Science, 348(6237), 1261447-1261447, https://doi.org/10.1126/science.1261447
Project(s):
Fondation Tara Expeditions (FondTara)
Tara Oceans Expedition (Tara_Oceans_2009-2013)
Coverage:
Median Latitude: 18.368012 * Median Longitude: 4.027800 * South-bound Latitude: -62.265800 * West-bound Longitude: -159.088000 * North-bound Latitude: 43.804700 * East-bound Longitude: 74.060700
Date/Time Start: 2009-09-15T11:30:00 * Date/Time End: 2012-03-20T13:07:00
Event(s):
TARA_20090915T1130Z_004_EVENT_PUMP ([day] [surface water layer (ENVO:00002042)]) * Latitude: 36.553300 * Longitude: -6.566900 * Date/Time: 2009-09-15T11:30:00 * Campaign: TARA_20090913Z (Lisbon to Tangier, Stations: TARA_003-004) * Basis: SV Tara * Method/Device: High Volume Peristaltic Pump ([HVP-PUMP]) * Comment: [Curator: No EVENT Logsheet]
TARA_20090915T1500Z_004_EVENT_NET ([day] [surface water layer (ENVO:00002042)] [proti) * Latitude: 36.553300 * Longitude: -6.566900 * Date/Time: 2009-09-15T15:00:00 * Campaign: TARA_20090913Z (Lisbon to Tangier, Stations: TARA_003-004) * Basis: SV Tara * Method/Device: Plankton net+sieve, type=Bongo, mesh(µm)=180, mouth(m^2)=0.258319, length(m)=3 ([NET-BONGO-180]+[SIEVE-2000]) * Comment: Device: material from the net was poured through a [SIEVE-2000] type=metal, shape=pan, mesh size (µm)=2000, diameter (cm)=30] [Curator: Time and position of the deployment was not recorded/ We used a single position for all events of station 004 and estimated the times from best experienced guesses (SP)]
TARA_20090915T1600Z_004_EVENT_NET ([day] [deep chlorophyll maximum layer (ENVO:010003) * Latitude: 36.553300 * Longitude: -6.566900 * Date/Time: 2009-09-15T16:00:00 * Campaign: TARA_20090913Z (Lisbon to Tangier, Stations: TARA_003-004) * Basis: SV Tara * Method/Device: Plankton net+sieve, type=Bongo, mesh(µm)=180, mouth(m^2)=0.258319, length(m)=3 ([NET-BONGO-180]+[SIEVE-2000]) * Comment: Device: material from the net was poured through a [SIEVE-2000] type=metal, shape=pan, mesh size (µm)=2000, diameter (cm)=30] [Curator: Time and position of the deployment was not recorded/ We used a single position for all events of station 004 and estimated the times from best experienced guesses (SP)]
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Sample ID | Sample ID | Pesant, Stephane | TARA_barcode# | ||
| 2 | Sample code/label | Sample label | Pesant, Stephane | TARA_station#_environmental-feature_size-fraction | ||
| 3 | Sample code/label 2 | Sample label 2 | Pesant, Stephane | INSDC sample accession number(s) | ||
| 4 | Accession number, genetics | Access no gen | Pesant, Stephane | published at the European Nucleotides Archive | of related run(s) for nucleotides data | |
| 5 | Uniform resource locator/link to source data file | URL source | Pesant, Stephane | published at PANGAEA, Data Publisher for Earth and Environmental Science | of related contextual data | |
| 6 | Sample code/label 2 | Sample label 2 | Pesant, Stephane | used in de Vargas, et al. (2015) | ||
| 7 | Sample code/label 2 | Sample label 2 | Pesant, Stephane | used in Sunagawa, et al. (2015) | ||
| 8 | Sample code/label 2 | Sample label 2 | Pesant, Stephane | used in Villar, et al. (2015) | ||
| 9 | Sample code/label 2 | Sample label 2 | Pesant, Stephane | used in Lima-Mendez, et al. (2015) | ||
| 10 | Sample code/label 2 | Sample label 2 | Pesant, Stephane | used in Brum, et al. (2015) | ||
| 11 | Station label | Station | Pesant, Stephane | TARA_station# | ||
| 12 | Event label | Event | ||||
| 13 | Method/Device of event | Method/Device | ||||
| 14 | Date/Time of event | Date/Time | ||||
| 15 | Latitude of event | Latitude | ||||
| 16 | Longitude of event | Longitude | ||||
| 17 | Depth, top/min | Depth top | m | Pesant, Stephane | of the environmental feature | |
| 18 | Depth, bottom/max | Depth bot | m | Pesant, Stephane | of the environmental feature | |
| 19 | Depth, nominal | Depth nominal | Pesant, Stephane | of the environmental feature | ||
| 20 | Environmental feature | Env feature | Pesant, Stephane | abbreviation | ||
| 21 | Environmental feature | Env feature | Pesant, Stephane | terms registered at EnvO, the Environmental Ontology | full name (ENVO:ID) | |
| 22 | Size fraction, lower threshold | Fraction lower | µm | Pesant, Stephane | ||
| 23 | Size fraction, upper threshold | Fraction upper | µm | Pesant, Stephane | ||
| 24 | Marine biome | MP biome | Pesant, Stephane | Longhurst (2007) | ||
| 25 | Ocean and sea region | OS region | Pesant, Stephane | IHO General Sea Areas (1953) registered at www.marineregions.org | [abbreviation] full name (MRGID:ID) | |
| 26 | Biogeographical province | BG province | Pesant, Stephane | Longhurst (2007) registered at marineregions.org | [abbreviation] full name (MRGID:ID) |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
10205 data points
Download Data
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