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Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2014): Registry of selected samples from the Tara Oceans Expedition (2009-2013). PANGAEA, https://doi.org/10.1594/PANGAEA.840721

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Abstract:
The present data set is a registry of samples from the Tara Oceans Expedition (2009-2013) that were selected for publication in a special issue of the SCIENCE journal (see related references below). The registry provides details about the sampling location and methodology of each sample. Uniform resource locators (URLs) offer direct links to additional contextual environmental data and to the corresponding sequence runs used for analysis in the related literature publications in the SCIENCE journal.
Replaced by:
Tara Oceans Consortium, Coordinators; Tara Oceans Expedition, Participants (2015): Environmental context of all samples from the Tara Oceans Expedition (2009-2013), about depth specific features. PANGAEA, https://doi.org/10.1594/PANGAEA.853810
Related to:
Lima-Mendez, Gipsi; Faust, Karoline; Henry, Nicolas; Decelle, Johan; Colin, Sébastien; Carcillo, Fabrizio; Chaffron, Samuel; Ignacio-Espinosa, J Cesar; Roux, Simon; Vincent, Flora; Bittner, Lucie; Darzi, Youssef; Wang, Jun; Audic, Stephane; Berline, Leo; Bontempi, Gianluca; Cabello, Ana M; Coppola, L; Cornejo-Castillo, Francisco M; d'Ovidio, Francesco; De Meester, Luc; Ferrera, Isabel; Garet-Delmas, Marie-José; Guidi, L; Lara, Enrique; Pesant, Stephane; Royo-Llonch, Marta; Salazar, Guillem; Sánchez, Pablo; Sebastian, Marta; Souffreau, Caroline; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; Tara Oceans Consortium, Coordinators; Gorsky, Gabriel; Not, Fabrice; Ogata, Hiroyuki; Speich, Sabrina; Stemmann, Lars; Weissenbach, Jean; Wincker, Patrick; Acinas, Silvia G; Sunagawa, Shinichi; Bork, Peer; Sullivan, Matthew B; Karsenti, Eric; Bowler, Chris; De Vargas, Colomban; Raes, Jeroen (2015): Determinants of community structure in the global plankton interactome. Science, 348(6237), 1262073-1262073, https://doi.org/10.1126/science.1262073
Villar, Emilie; Farrant, Gregory K; Follows, Michael J; Garczarek, Laurence; Speich, Sabrina; Audic, Stephane; Bittner, Lucie; Blanke, Bruno; Brum, Jennifer; Brunet, Christian; Casotti, Raffaella; Chase, Alison; Dolan, John; D'Ortenzio, Fabrizio; Gattuso, Jean-Pierre; Grima, Nicolas; Guidi, L; Hill, Christopher N; Jahn, Oliver; Jamet, Jean-Louis; Le Goff, Hervé; Lepoivre, Cyrille; Malviya, Shruti; Pelletier, Eric; Romagnan, Jean-Baptiste; Roux, Simon; Santini, Sébastien; Scalco, Eleonora; Schwenk, Sarah M; Tanaka, A; Testor, Pierre; Vannier, Thomas; Vincent, Flora; Zingone, Adriana; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; Tara Oceans Consortium, Coordinators; Acinas, Silvia G; Bork, Peer; Boss, Emmanuel; De Vargas, Colomban; Gorsky, Gabriel; Ogata, Hiroyuki; Pesant, Stephane; Sullivan, Matthew B; Sunagawa, Shinichi; Wincker, Patrick; Karsenti, Eric; Bowler, Chris; Not, Fabrice; Hingamp, Pascal; Iudicone, Daniele (2015): Environmental characteristics of Agulhas rings affect interocean plankton transport. Science, 348(6237), 1261447-1261447, https://doi.org/10.1126/science.1261447
Project(s):
Fondation Tara Expeditions (FondTara)
Tara Oceans Expedition (TOE-2009-2013)
Coverage:
Median Latitude: 18.368012 * Median Longitude: 4.027800 * South-bound Latitude: -62.265800 * West-bound Longitude: -159.088000 * North-bound Latitude: 43.804700 * East-bound Longitude: 74.060700
Date/Time Start: 2009-09-15T11:30:00 * Date/Time End: 2012-03-20T13:07:00
Event(s):
TARA_20090915T1130Z_004_EVENT_PUMP ([day] [surface water layer (ENVO:00002042)]) * Latitude: 36.553300 * Longitude: -6.566900 * Date/Time: 2009-09-15T11:30:00 * Campaign: TARA_20090913Z (Lisbon to Tangier, Stations: TARA_003-004) * Basis: SV Tara * Device: High Volume Peristaltic Pump ([HVP-PUMP]) * Comment: [Curator: No EVENT Logsheet]
TARA_20090915T1500Z_004_EVENT_NET ([day] [surface water layer (ENVO:00002042)] [proti) * Latitude: 36.553300 * Longitude: -6.566900 * Date/Time: 2009-09-15T15:00:00 * Campaign: TARA_20090913Z (Lisbon to Tangier, Stations: TARA_003-004) * Basis: SV Tara * Device: Plankton net+sieve, type=Bongo, mesh(µm)=180, mouth(m^2)=0.258319, length(m)=3 ([NET-BONGO-180]+[SIEVE-2000]) * Comment: Device: material from the net was poured through a [SIEVE-2000] type=metal, shape=pan, mesh size (µm)=2000, diameter (cm)=30] [Curator: Time and position of the deployment was not recorded/ We used a single position for all events of station 004 and estimated the times from best experienced guesses (SP)]
TARA_20090915T1600Z_004_EVENT_NET ([day] [deep chlorophyll maximum layer (ENVO:010003) * Latitude: 36.553300 * Longitude: -6.566900 * Date/Time: 2009-09-15T16:00:00 * Campaign: TARA_20090913Z (Lisbon to Tangier, Stations: TARA_003-004) * Basis: SV Tara * Device: Plankton net+sieve, type=Bongo, mesh(µm)=180, mouth(m^2)=0.258319, length(m)=3 ([NET-BONGO-180]+[SIEVE-2000]) * Comment: Device: material from the net was poured through a [SIEVE-2000] type=metal, shape=pan, mesh size (µm)=2000, diameter (cm)=30] [Curator: Time and position of the deployment was not recorded/ We used a single position for all events of station 004 and estimated the times from best experienced guesses (SP)]
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethodComment
1Sample IDSample IDPesant, StephaneTARA_barcode#
2Sample code/labelSample labelPesant, StephaneTARA_station#_environmental-feature_size-fraction
3Sample code/label 2Sample label 2Pesant, StephaneINSDC sample accession number(s)
4Uniform resource locator/link to source data fileURL sourcePesant, Stephanepublished at the European Nucleotides Archiveof related run(s) for nucleotides data
5Uniform resource locator/link to source data fileURL sourcePesant, Stephanepublished at PANGAEA, Data Publisher for Earth and Environmental Scienceof related contextual data
6Sample code/label 2Sample label 2Pesant, Stephaneused in de Vargas, et al. (2015)
7Sample code/label 2Sample label 2Pesant, Stephaneused in Sunagawa, et al. (2015)
8Sample code/label 2Sample label 2Pesant, Stephaneused in Villar, et al. (2015)
9Sample code/label 2Sample label 2Pesant, Stephaneused in Lima-Mendez, et al. (2015)
10Sample code/label 2Sample label 2Pesant, Stephaneused in Brum, et al. (2015)
11Station labelStationPesant, StephaneTARA_station#
12Event labelEvent
13Device of eventDevice
14Date/Time of eventDate/Time
15Latitude of eventLatitude
16Longitude of eventLongitude
17Depth, top/minDepth topmPesant, Stephaneof the environmental feature
18Depth, bottom/maxDepth botmPesant, Stephaneof the environmental feature
19Depth, nominalDepth, nominalPesant, Stephaneof the environmental feature
20Environmental featureEnv featurePesant, Stephaneabbreviation
21Environmental featureEnv featurePesant, Stephaneterms registered at EnvO, the Environmental Ontologyfull name (ENVO:ID)
22Size fraction, lower thresholdFraction lowerµmPesant, Stephane
23Size fraction, upper thresholdFraction upperµmPesant, Stephane
24Marine biomeMP biomePesant, StephaneLonghurst (2007)
25Ocean and sea regionOS regionPesant, StephaneIHO General Sea Areas (1953) registered at www.marineregions.org[abbreviation] full name (MRGID:ID)
26Biogeographical provinceBG provincePesant, StephaneLonghurst (2007) registered at marineregions.org[abbreviation] full name (MRGID:ID)
Size:
10207 data points

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