Gibbin, Emma M; Putnam, H M; Davy, Simon K; Gates, Ruth D (2014): Adaptation of a globally important coccolithophore to ocean warming and acidification [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.837880, Supplement to: Gibbin, EM et al. (2014): Intracellular pH and its response to CO2-driven seawater acidification in symbiotic versus non-symbiotic coral cells. Journal of Experimental Biology, 217(11), 1963-1969, https://doi.org/10.1242/jeb.099549
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Abstract:
Regulating intracellular pH (pHi) is critical for optimising the metabolic activity of corals, yet mechanisms involved in pH regulation and the buffering capacity within coral cells are not well understood. Our study investigated how the presence of symbiotic dinoflagellates affects the response of pHi to pCO2-driven seawater acidification in cells isolated from Pocillopora damicornis. Using the fluorescent dye BCECF-AM, in conjunction with confocal microscopy, we simultaneously characterised the response of pHi in host coral cells and their dinoflagellate symbionts, in symbiotic and non-symbiotic states under saturating light, with and without the photosynthetic inhibitor DCMU. Each treatment was run under control (pH 7.8) and CO2 acidified seawater conditions (decreasing pH from 7.8 - 6.8). After two hours of CO2 addition, by which time the external pH (pHe) had declined to 6.8, the dinoflagellate symbionts had increased their pHi by 0.5 pH units above control levels. In contrast, in both symbiotic and non-symbiotic host coral cells, 15 min of CO2 addition (0.2 pH unit drop in pHe) led to cytoplasmic acidosis equivalent to 0.4 pH units. Despite further seawater acidification over the duration of the experiment, the pHi of non-symbiotic coral cells did not change, though in host cells containing a symbiont cell the pHi recovered to control levels. This recovery was negated when cells were incubated with DCMU. Our results reveal that photosynthetic activity of the endosymbiont is tightly coupled with the ability of the host cell to recover from cellular acidosis after exposure to high CO2 / low pH.
Keyword(s):
Further details:
Lavigne, Héloïse; Epitalon, Jean-Marie; Gattuso, Jean-Pierre (2014): seacarb: seawater carbonate chemistry with R. R package version 3.0. https://cran.r-project.org/package=seacarb
Project(s):
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-11-04.
Parameter(s):
# | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
---|---|---|---|---|---|---|
1 | Species | Species | Gates, Ruth D | |||
2 | Figure | Fig | Gates, Ruth D | |||
3 | Treatment | Treat | Gates, Ruth D | |||
4 | Time in minutes | Time | min | Gates, Ruth D | ||
5 | Replicate | Repl | Gates, Ruth D | |||
6 | pH, extracellular | pHe | Gates, Ruth D | NBS scale | ||
7 | pH change | D pH | Gates, Ruth D | host intact symbiosis, NBS scale, relative change in pHi after acidification | ||
8 | pH change | D pH | Gates, Ruth D | alga intact symbiosis, NBS scale, relative change in pHi after acidification | ||
9 | pH change | D pH | Gates, Ruth D | non-symbiotic host cell, NBS scale, relative change in pHi after acidification | ||
10 | pH change | D pH | Gates, Ruth D | isolated alga, NBS scale, relative change in pHi after acidification | ||
11 | pH, intracellular | pH in | Gates, Ruth D | host intact symbiosis, NBS scale | ||
12 | pH, intracellular | pH in | Gates, Ruth D | alga intact symbiosis, NBS scale | ||
13 | pH, intracellular | pH in | Gates, Ruth D | non-symbiotic host cell, NBS scale | ||
14 | pH, intracellular | pH in | Gates, Ruth D | isolated alga, NBS scale | ||
15 | Salinity | Sal | Gates, Ruth D | |||
16 | Salinity, standard error | Sal std e | ± | Gates, Ruth D | ||
17 | pH | pH | Gates, Ruth D | NBS scale | ||
18 | pH, standard error | pH std e | ± | Gates, Ruth D | NBS scale | |
19 | Alkalinity, total | AT | µmol/kg | Gates, Ruth D | ||
20 | Alkalinity, total, standard error | AT std e | ± | Gates, Ruth D | ||
21 | Temperature, water | Temp | °C | Gates, Ruth D | ||
22 | Temperature, water, standard error | T std e | ± | Gates, Ruth D | ||
23 | Carbonate system computation flag | CSC flag | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | ||
24 | pH | pH | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | total scale | |
25 | Carbon dioxide | CO2 | µmol/kg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | |
26 | Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) | pCO2water_SST_wet | µatm | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | |
27 | Fugacity of carbon dioxide (water) at sea surface temperature (wet air) | fCO2water_SST_wet | µatm | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | |
28 | Bicarbonate ion | [HCO3]- | µmol/kg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | |
29 | Carbonate ion | [CO3]2- | µmol/kg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | |
30 | Carbon, inorganic, dissolved | DIC | µmol/kg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | |
31 | Aragonite saturation state | Omega Arg | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) | ||
32 | Calcite saturation state | Omega Cal | Yang, Yan | Calculated using seacarb after Nisumaa et al. (2010) |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
3840 data points
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