Citation:

PANGAEA.837593

Name: Gene expression profiling in gills of the great spider crab Hyas araneus in response to ocean acidification and warming
Published: 2014-10-29
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Acid-base regulation; Animalia; Arctic; Arthropoda; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Gene expression (incl. proteomics); Hyas araneus; Laboratory experiment; Polar; Single species; Temperature

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Published: 2014-10-29 • DOI registered: 2014-11-26

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Keyword(s):

Acid-base regulation; Animalia; Arctic; Arthropoda; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Gene expression (incl. proteomics); Hyas araneus; Laboratory experiment; Polar; Single species; Temperature

Related to:

Harms, Lars; Frickenhaus, Stephan; Schiffer, Melanie; Mark, Felix Christopher; Storch, Daniela; Held, Christoph; Pörtner, Hans-Otto; Lucassen, Magnus (2014): Gene expression profiling in gills of the great spider crab Hyas araneus in response to ocean acidification and warming. BMC Genomics, BMC Genomics, 15(1), 789, https://doi.org/10.1186/1471-2164-15-789

Original version:

Harms, Lars; Frickenhaus, Stephan; Schiffer, Melanie; Mark, Felix Christopher; Storch, Daniela; Held, Christoph; Lucassen, Magnus (2014): Gene expression profiling in gills of the great spider crab Hyas araneus in respond to ocean acidification and warming, supplementary data [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.833705

Further details:

Lavigne, Héloïse; Epitalon, Jean-Marie; Gattuso, Jean-Pierre (2014): seacarb: seawater carbonate chemistry with R. R package version 3.0 [webpage]. https://cran.r-project.org/package=seacarb

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 78.977250 * Longitude: 11.490900

Date/Time Start: 2009-05-01T00:00:00 * Date/Time End: 2009-05-31T00:00:00

Event(s):

Spitsbergen * Latitude: 78.977250 * Longitude: 11.490900 * Date/Time Start: 2009-05-01T00:00:00 * Date/Time End: 2009-05-31T00:00:00 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-10-29.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Species	Species		Harms, Lars
2	Treatment	Treat		Harms, Lars
3	Accession number	Access No		Harms, Lars
4	Description	Description		Harms, Lars
5	Category	Cat		Harms, Lars
6	Rank	Rank		Harms, Lars
7	Read length	Read l	bp	Harms, Lars
8	Gene expression, fold change, relative	Gene expression		Harms, Lars		log2-fold change
9	Test set	Test set		Harms, Lars
10	Gene Ontology term	GO term		Harms, Lars
11	Description	Description		Harms, Lars		the name of the functional group
12	Category	Cat		Harms, Lars		molecular function, biological process or cellular component
13	False discovery rate	FDR		Harms, Lars
14	Comment	Comment		Harms, Lars		over-/under-represented
15	Haemolymph, pH	pH (ha)		Harms, Lars
16	Haemolymph, bicarbonate ion	[HCO3]- (ha)	mmol/l	Harms, Lars
17	Haemolymph, partial pressure of carbon dioxide	pCO2 (ha)	kPa	Harms, Lars
18	Temperature, water	Temp	°C	Harms, Lars
19	Temperature, water, standard deviation	Temp std dev	±	Harms, Lars
20	Salinity	Sal		Harms, Lars
21	Salinity, standard deviation	Sal std dev	±	Harms, Lars
22	pH, NBS scale	pH NBS		Harms, Lars	Potentiometric	NBS scale
23	pH, standard deviation	pH std dev	±	Harms, Lars	Potentiometric	NBS scale
24	Carbon, inorganic, dissolved	DIC	µmol/kg	Harms, Lars	Coulometric titration
25	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Harms, Lars	Coulometric titration
26	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Harms, Lars	Calculated using CO2SYS
27	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Harms, Lars	Calculated using CO2SYS
28	Alkalinity, total	AT	µmol/kg	Harms, Lars	Calculated using CO2SYS
29	Alkalinity, total, standard deviation	AT std dev	±	Harms, Lars	Calculated using CO2SYS
30	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
31	pH, total scale	pHT		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
32	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
33	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
34	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
35	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
36	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
37	Alkalinity, total	AT	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
38	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
39	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

128871 data points

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