Citation:

PANGAEA.835119

Name: Villefranche MedSeA mesocosm experiment 2013: perturbation studies
Published: 2017
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Calcification/Dissolution; Coast and continental shelf; Community composition and diversity; Entire community; Field experiment; Mediterranean Sea; Mesocosm or benthocosm; Other metabolic rates; Pelagos; Primary production/Photosynthesis; Respiration; Temperate

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Keyword(s):

Calcification/Dissolution; Coast and continental shelf; Community composition and diversity; Entire community; Field experiment; Mediterranean Sea; Mesocosm or benthocosm; Other metabolic rates; Pelagos; Primary production/Photosynthesis; Respiration; Temperate

Related to:

Maugendre, Laure; Gattuso, Jean-Pierre; Poulton, Alex J; Dellisanti, Walter; Gaubert, M; Guieu, Cecile; Gazeau, Frédéric (2015): No detectable effect of ocean acidification on plankton metabolism in the NW oligotrophic Mediterranean Sea: results from two mesocosm studies. Estuarine, Coastal and Shelf Science, https://doi.org/10.1016/j.ecss.2015.03.009

Further details:

Lavigne, Héloïse; Epitalon, Jean-Marie; Gattuso, Jean-Pierre (2014): seacarb: seawater carbonate chemistry with R. R package version 3.0. https://cran.r-project.org/package=seacarb

Project(s):

Mediterranean Sea Acidification in a Changing Climate (MedSeA)

Ocean Acidification International Coordination Centre (OA-ICC)

Funding:

Seventh Framework Programme (FP7), grant/award no. 265103 : Mediterranean Sea Acidification in a Changing Climate

Coverage:

Latitude: 43.697000 * Longitude: 7.312000

Date/Time Start: 2013-02-17T08:00:00 * Date/Time End: 2013-03-05T13:47:00

Minimum DEPTH, water, experiment: 0.50 m * Maximum DEPTH, water, experiment: 12.50 m

Event(s):

Villefranche-2013-CTD-perturbation * Latitude: 43.697000 * Longitude: 7.312000 * Date/Time Start: 2013-02-17T07:30:00 * Date/Time End: 2013-03-05T14:00:00 * Location: Bay of Villefranche, Mediterranean Sea * Method/Device: Mesocosm experiment (MESO)

Villefranche-2013-IWS-perturbation * Latitude: 43.697000 * Longitude: 7.312000 * Date/Time Start: 2013-02-17T07:30:00 * Date/Time End: 2013-03-05T14:00:00 * Location: Bay of Villefranche, Mediterranean Sea * Method/Device: Mesocosm experiment (MESO)

Comment:

<0= below detection limits. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-08-21.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event
2	Other event	Other event		Gazeau, Frédéric
3	Treatment	Treat		Gazeau, Frédéric
4	Day of experiment	DOE	day	Guieu, Cecile
5	DATE/TIME	Date/Time				Geocode
6	DEPTH, water, experiment	Depth water exp	m			Geocode
7	Temperature, water	Temp	°C	Taillandier, V	CTD
8	Salinity	Sal		Taillandier, V	CTD
9	Density, sigma, in situ	Sigma in situ	kg/m³	Taillandier, V	CTD
10	Fluorometer	Fluorometer	V	Taillandier, V	CTD
11	Oxygen	O2	µmol/l	Taillandier, V	CTD with attached oxygen sensor
12	Irradiance	E	µmol/m²/s	Taillandier, V	CTD
13	pH	pH		Taillandier, V	CTD	Total scale; based on a empiric relationship between pH calculated from TA and TCO2 and integrated pH from the CTD (originally on the NBS)
14	Carbonate system computation flag	CSC flag		Alliouane, Samir	Calculated using seacarb
15	pH	pH		Alliouane, Samir	Calculated using seacarb	Total scale
16	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Alliouane, Samir	Calculated using seacarb
17	Bicarbonate ion	[HCO3]-	µmol/kg	Alliouane, Samir	Calculated using seacarb
18	Carbonate ion	[CO3]2-	µmol/kg	Alliouane, Samir	Calculated using seacarb
19	Carbon, inorganic, dissolved	DIC	µmol/kg	Alliouane, Samir	AIRICA analyzer (Miranda)
20	Alkalinity, total	AT	µmol/kg	Alliouane, Samir	Titration potentiometric, Metrohm
21	Aragonite saturation state	Omega Arg		Alliouane, Samir	Calculated using seacarb
22	Calcite saturation state	Omega Cal		Alliouane, Samir	Calculated using seacarb
23	Ammonium	[NH4]+	µmol/l	Sallon, Amèlie	Skalar AutoAnalyser
24	Silicon	Si	µmol/l	Giani, Michele	Skalar AutoAnalyser
25	Nitrogen, total, particulate	TPN	µmol/l	Giani, Michele	Element analyser CHN, Costech
26	Carbon, total, particulate	TPC	µmol/l	Giani, Michele	Element analyser CHN, Costech
27	Carbon, organic, particulate	POC	µmol/l	Giani, Michele	Element analyser CHN, Costech
28	Phosphorus, particulate	PP	µmol/l	Giani, Michele	Colorimetric, GF/F filters, autoanalyzer (Bran Luebbe)	Total
29	Chlorophyll c3	Chl c3	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
30	Chlorophyll c1+c2	Chl c1+c2	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
31	Chlorophyllide a	Chlide a	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)	Sum
32	Peridinin	Perid	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
33	Phaeophorbide a	Phaeopho a	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
34	19-Butanoyloxyfucoxanthin	But-fuco	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
35	Fucoxanthin	Fuco	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
36	Neoxanthin	Neo	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
37	Prasinoxanthin	Pras	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
38	Violaxanthin	Viola	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
39	19-Hexanoyloxyfucoxanthin	Hex-fuco	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
40	Diadinoxanthin	Diadino	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
41	Alloxanthin	Allo	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
42	Diatoxanthin	Diato	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
43	Zeaxanthin	Zea	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
44	Lutein	Lut	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
45	Bacteriochlorophyll a	BChl a	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
46	Divinyl chlorophyll b	DV chl b	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
47	Chlorophyll b	Chl b	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
48	Divinyl chlorophyll a	DV chl a	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
49	Chlorophyll a	Chl a	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)
50	Chlorophyll a	Chl a	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)	Total
51	Phaeophytin a	Phaeophytin a	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)	Sum
52	Carotene	Carotene	µg/l	Sallon, Amèlie	High Performance Liquid Chromatography (HPLC)	Sum
53	Prochlorococcus	Prochlorococcus	#/ml	Pedrotti, Maria Luiza	Flow cytometry
54	Synechococcus	Synechococcus	#/ml	Pedrotti, Maria Luiza	Flow cytometry
55	Picoeukaryotes, autotrophic	PEuk auto	#/ml	Pedrotti, Maria Luiza	Flow cytometry
56	Nanoeukaryotes	NEuk	#/ml	Pedrotti, Maria Luiza	Flow cytometry
57	Bacteria	Bact	#/ml	Pitta, Paraskevi	Flow cytometry
58	Bacteria, low DNA fluorescence	Bact LDNA	#/ml	Pitta, Paraskevi	Flow cytometry
59	Bacteria, high DNA fluorescence	Bact HDNA	#/ml	Pitta, Paraskevi	Flow cytometry
60	Viral abundance	Virus	#/ml	Pitta, Paraskevi	Flow cytometry
61	Virus, low DNA fluorescence	Virus LDNA	#/ml	Pitta, Paraskevi	Flow cytometry
62	Virus, medium DNA fluorescence	Virus HDNA	#/ml	Pitta, Paraskevi	Flow cytometry
63	Virus, high DNA fluorescence	Virus HDNA	#/ml	Pitta, Paraskevi	Flow cytometry
64	beta-glucosidase activity	MUF-bglu	µmol/l/h	Celussi, Mauro		MUF-beta-D-glucose fluorogenic substrate
65	Lipase activity	Lipase activity	nmol/l/h	Celussi, Mauro		MUF-beta-D-glucose fluorogenic substrate
66	Chitinase activity	Chitinase activity	nmol/l/h	Celussi, Mauro		MUF-beta-D-glucose fluorogenic substrate
67	Phosphatase activity	MUF-Phos	µmol/l/h	Celussi, Mauro		MUF-beta-D-glucose fluorogenic substrate
68	Leucine aminopeptidase activity	Leu aminopep	nmol/l/h	Celussi, Mauro		MCA-leucine fluorogenic substrate
69	Prokaryotes	Prokaryotes	#/ml	Celussi, Mauro	Epifluorescence microscopy	Highly active
70	Prokaryotes	Prokaryotes	#/ml	Celussi, Mauro	Epifluorescence microscopy	Total
71	Net community production of oxygen	NCP O2	µmol/l/day	Gazeau, Frédéric	Incubation (INCUB)	Incubated in situ at 4m depth in 5 x biological oxygen demand (BOD) 60ml bottles over 24h. Rate estimated using a linear regression between initial and final oxygen concentration
72	Net community production of oxygen, standard error	NCP O2 std e	±	Gazeau, Frédéric	Calculated from linear regression
73	Respiration rate, oxygen	Resp O2	µmol/l/day	Gazeau, Frédéric	Incubation (INCUB)	Community; Incubated in the laboratory in the dark at in situ temperature in 5 x biological oxygen demand (BOD) 60ml bottles over 24h. Rate estimated using a linear regression between initial and final oxygen concentration
74	Respiration rate, oxygen, standard deviation	Resp O2 std dev	±	Gazeau, Frédéric	Calculated from linear regression	Community
75	Gross community production of oxygen	GCP O2	µmol/l/day	Gazeau, Frédéric	Calculated	Calculated as the difference between net community production and respiration
76	Gross community production of oxygen, standard error	GCP O2 std e	±	Gazeau, Frédéric	Calculated using error propagation
77	Bacterial production	BP	ng/l/h	Giannakourou, Antonia	Incubation (INCUB)	3H-Leucine incorporation in triplicated bottles incubated in the laboratory in the dark at in situ temperature over 2h
78	Primary production of POC as determined by 14C POC production	PP 14C POC	µmol/l/day	Maugendre, Laure
79	Primary production of POC as determined by 14C POC production, standard deviation	PP 14C POC std dev	±	Maugendre, Laure
80	Calcification rate of calcium carbonate	Calc rate CaCO3	µmol/l/day	Maugendre, Laure
81	Calcification rate, standard deviation	Calc rate std dev	±	Maugendre, Laure
82	Exudation as determined by 14C DOC production	Exud 14C DOC	µmol/l/day	Maugendre, Laure
83	Exudation as determined by 14C DOC production, standard deviation	Exud 14C DOC std dev	±	Maugendre, Laure
84	Transparent exopolymer particles as Gum Xanthan equivalents per volume	TEP	µg Xeq/l	Pedrotti, Maria Luiza
85	Nitrate	[NO3]-	µmol/l	Louis, Justine	Spectrophotometric method with Liquid Waveguide Capillary Cell (LWCC)	Filtration onto 0.2 µm polycarbonate filters
86	Phosphate	[PO4]3-	µmol/l	Louis, Justine	Spectrophotometric method with Liquid Waveguide Capillary Cell (LWCC)	Filtration onto 0.2 µm polycarbonate filters
87	Iron, dissolved	Fe diss	nmol/l	Louis, Justine	FIA with chemiluminescence detection	Filtration onto 0.2 µm polycarbonate filters
88	Nitrogen, organic, dissolved	DON	µmol/l	Louis, Justine	UV light photo oxidation then spectrophotometric method with LWCC	Calculated as the difference between total dissolved nitrogen measured (TDN) and nitrate concentration
89	Phosphate, organic, dissolved	DOP	µmol/l	Louis, Justine	UV light photo oxidation then spectrophotometric method with LWCC	Calculated as the difference between total dissolved phosphorus measured (TDP) and phosphate concentration
90	Validation flag/comment	Flag comm		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
91	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Total scale
92	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
93	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
94	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
95	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
96	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
97	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
98	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

67487 data points

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