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Eichner, Meri; Kranz, Sven A; Rost, Björn (2014): Combined effects of different CO2 levels and N sources on the diazotrophic cyanobacterium Trichodesmium [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.834556, Supplement to: Eichner, M et al. (2014): Combined effects of different CO2 levels and N sources on the diazotrophic cyanobacterium Trichodesmium. Physiologia Plantarum, 152(2), 316-330, https://doi.org/10.1111/ppl.12172

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Abstract:
To predict effects of climate change and possible feedbacks, it is crucial to understand the mechanisms behind CO2 responses of biogeochemically relevant phytoplankton species. Previous experiments on the abundant N2 fixers Trichodesmium demonstrated strong CO2 responses, which were attributed to an energy reallocation between its carbon (C) and nitrogen (N) acquisition. Pursuing this hypothesis, we manipulated the cellular energy budget by growing Trichodesmium erythraeum IMS101 under different CO2 partial pressure (pCO2) levels (180, 380, 980 and 1400?µatm) and N sources (N2 and NO3-). Subsequently, biomass production and the main energy-generating processes (photosynthesis and respiration) and energy-consuming processes (N2 fixation and C acquisition) were measured. While oxygen fluxes and chlorophyll fluorescence indicated that energy generation and its diurnal cycle was neither affected by pCO2 nor N source, cells differed in production rates and composition. Elevated pCO2 increased N2 fixation and organic C and N contents. The degree of stimulation was higher for nitrogenase activity than for cell contents, indicating a pCO2 effect on the transfer efficiency from N2 to biomass. pCO2-dependent changes in the diurnal cycle of N2 fixation correlated well with C affinities, confirming the interactions between N and C acquisition. Regarding effects of the N source, production rates were enhanced in NO3-grown cells, which we attribute to the higher N retention and lower ATP demand compared with N2 fixation. pCO2 effects on C affinity were less pronounced in NO3- users than N2 fixers. Our study illustrates the necessity to understand energy budgets and fluxes under different environmental conditions for explaining indirect effects of rising pCO2.
Keyword(s):
Bacteria; Bottles or small containers/Aquaria (<20 L); Cyanobacteria; Growth/Morphology; Laboratory experiment; Laboratory strains; Macro-nutrients; Not applicable; Other metabolic rates; Pelagos; Phytoplankton; Primary production/Photosynthesis; Respiration; Single species; Trichodesmium erythraeum
Further details:
Lavigne, Héloïse; Epitalon, Jean-Marie; Gattuso, Jean-Pierre (2014): seacarb: seawater carbonate chemistry with R. R package version 3.0. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne et al, 2014) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation is 2014-07-30.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
SpeciesSpeciesEichner, Meri
FigureFigEichner, Meri
TreatmentTreatEichner, Meri
SalinitySalEichner, Meri
Temperature, waterTemp°CEichner, Meri
IrradianceEµmol/m2/sEichner, Meri
pHpHEichner, MeriPotentiometricNBS scale
pH, standard deviationpH std dev±Eichner, MeriPotentiometricNBS scale
Alkalinity, totalATµmol/kgEichner, MeriPotentiometric titration
10 Alkalinity, total, standard deviationAT std dev±Eichner, MeriPotentiometric titration
11 Carbon, inorganic, dissolvedDICµmol/kgEichner, MeriCoulometric titration
12 Carbon, inorganic, dissolved, standard deviationDIC std dev±Eichner, MeriCoulometric titration
13 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetppmvEichner, MeriCalculated using CO2SYS
14 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Eichner, MeriCalculated using CO2SYS
15 Growth rateµ1/dayEichner, Meri
16 Growth rate, standard deviationµ std dev±Eichner, Meri
17 Carbon, organic, particulate per chlorophyll aPOC/Chl aµmol/mgEichner, Meri
18 Carbon, organic, particulate, standard deviationPOC std dev±Eichner, Meriper Chla
19 Nitrogen, organic, particulate per chlorophyll aPON/Chl aµmol/mgEichner, Meri
20 Nitrogen, organic, particulate, standard deviationPON std dev±Eichner, Meriper Chla
21 Particulate organic carbon production, per chlorophyll aPOC prod/Chl aµmol/µg/dayEichner, Meri
22 Particulate organic carbon, production, standard deviationPOC prod std dev±Eichner, Meriper Chl a
23 Particulate organic nitrogen production, per chlorophyll aPON prod/Chl aµmol/µg/dayEichner, Meri
24 Particulate organic nitrogen production, standard deviationPON prod std dev±Eichner, Meriper Chl a
25 Carbon, organic, particulate/Nitrogen, organic, particulate ratioPOC/PONEichner, Meri
26 Carbon, organic, particulate/Nitrogen, organic, particulate ratio, standard deviationPOC/PON std dev±Eichner, Meri
27 IdentificationIDEichner, Meri
28 Time in hoursTimehEichner, Meriafter beginning of photoperiod
29 Light:Dark cycleL:Dhh:hhEichner, Meri
30 Nitrogen fixation rate per chlorophyll aN2 fix/Chlnmol/µg/hEichner, Meri
31 Time point, descriptiveTime pointEichner, Meri
32 Net oxygen evolution, per chlorophyll aO2 ev/Chlµmol/mg/hEichner, Merimaximum rate
33 Net oxygen evolution, per chlorophyll a, standard deviationO2 ev/Chl std dev±Eichner, Merimaximum rate
34 Carbon, inorganic, dissolved, half saturation concentrationK1/2 DICµmol/lEichner, Meri
35 Carbon, inorganic, dissolved, half saturation concentration, standard deviationK1/2 DIC std dev±Eichner, Meri
36 Maximum photochemical quantum yield of photosystem IIFv/FmEichner, Merimeasured in dark
37 Maximum photochemical quantum yield of photosystem II, standard deviationFv/Fm std dev±Eichner, Merimeasured in dark
38 Maximum photochemical quantum yield of photosystem IIFv/FmEichner, Merimeasured in light
39 Maximum photochemical quantum yield of photosystem II, standard deviationFv/Fm std dev±Eichner, Merimeasured in light
40 Effective absorbance cross-section of photosystem IIsigma PSIIA2/quantaEichner, Merimeasured in dark
41 Effective absorbance cross-section of photosystem II, standard deviationsigma PSII std dev±Eichner, Merimeasured in dark
42 Effective absorbance cross-section of photosystem IIsigma PSIIA2/quantaEichner, Merimeasured in light
43 Effective absorbance cross-section of photosystem II, standard deviationsigma PSII std dev±Eichner, Merimeasured in light
44 Re-oxidation time of the Qa acceptortQaµsEichner, Merimeasured in dark
45 Re-oxidation time of the Qa acceptor, standard deviationtQa std dev±Eichner, Merimeasured in dark
46 Re-oxidation time of the Qa acceptortQaµsEichner, Merimeasured in light
47 Re-oxidation time of the Qa acceptor, standard deviationtQa std dev±Eichner, Merimeasured in light
48 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
50 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
53 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
55 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
57 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1523 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Species

Fig

Treat

Sal

Temp [°C]

E [µmol/m2/s]

pH
(NBS scale, Potentiometric)

pH std dev [±]
(NBS scale, Potentiometric)

AT [µmol/kg]
(Potentiometric titration)
10 
AT std dev [±]
(Potentiometric titration)
11 
DIC [µmol/kg]
(Coulometric titration)
12 
DIC std dev [±]
(Coulometric titration)
13 
pCO2water_SST_wet [ppmv]
(Calculated using CO2SYS)
14 
pCO2 std dev [±]
(Calculated using CO2SYS)
15 
µ [1/day]
16 
µ std dev [±]
17 
POC/Chl a [µmol/mg]
18 
POC std dev [±]
(per Chla)
19 
PON/Chl a [µmol/mg]
20 
PON std dev [±]
(per Chla)
21 
POC prod/Chl a [µmol/µg/day]
22 
POC prod std dev [±]
(per Chl a)
23 
PON prod/Chl a [µmol/µg/day]
24 
PON prod std dev [±]
(per Chl a)
25 
POC/PON
26 
POC/PON std dev [±]
27 
ID
28 
Time [h]
(after beginning of photoperiod)
29 
L:D [hh:hh]
30 
N2 fix/Chl [nmol/µg/h]
31 
Time point
32 
O2 ev/Chl [µmol/mg/h]
(maximum rate)
33 
O2 ev/Chl std dev [±]
(maximum rate)
34 
K1/2 DIC [µmol/l]
35 
K1/2 DIC std dev [±]
36 
Fv/Fm
(measured in dark)
37 
Fv/Fm std dev [±]
(measured in dark)
38 
Fv/Fm
(measured in light)
39 
Fv/Fm std dev [±]
(measured in light)
40 
sigma PSII [A2/quanta]
(measured in dark)
41 
sigma PSII std dev [±]
(measured in dark)
42 
sigma PSII [A2/quanta]
(measured in light)
43 
sigma PSII std dev [±]
(measured in light)
44 
tQa [µs]
(measured in dark)
45 
tQa std dev [±]
(measured in dark)
46 
tQa [µs]
(measured in light)
47 
tQa std dev [±]
(measured in light)
48 
CSC flag
(Calculated using seacarb afte...)
49 
pH
(total scale, Calculated using...)
50 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
51 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
52 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
53 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
54 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
55 
DIC [µmol/kg]
(Calculated using seacarb afte...)
56 
Omega Arg
(Calculated using seacarb afte...)
57 
Omega Cal
(Calculated using seacarb afte...)
Trichodesmium erythraeum IMS101 (prokaryote)1pCO2 180 µatm -NO3-33.8251508.480.04241511184710173120.3590.0164.90.21.010.051.750.100.360.024.830.10268.344.99175.17174.621545.01357.541907.545.718.69
Trichodesmium erythraeum IMS101 (prokaryote)1pCO2 180 µatm +NO3-33.8251508.490.0424383718682216840.3420.0325.30.71.100.161.890.240.390.054.820.06268.354.88171.48170.941547.69366.491919.065.868.91
Trichodesmium erythraeum IMS101 (prokaryote)1pCO2 380 µatm -NO3-33.8251508.260.0324081520146329220.3430.0424.70.20.970.041.600.220.330.044.810.08268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)1pCO2 380 µatm +NO3-33.8251508.260.0423897200312325100.3650.0295.00.21.070.051.820.140.390.034.680.07268.129.56335.72334.661784.14248.772042.473.986.04
Trichodesmium erythraeum IMS101 (prokaryote)1pCO2 1000 µatm -NO3-33.8251507.880.02237715214217918120.3120.0515.61.21.140.241.260.420.260.094.890.09267.7426.78940.33937.372083.12121.082230.981.932.94
Trichodesmium erythraeum IMS101 (prokaryote)1pCO2 1000 µatm +NO3-33.8251507.890.03239219216626912350.3540.0216.00.81.250.192.150.190.450.054.820.12267.7526.26922.22919.322090.54124.342241.141.993.02
Trichodesmium erythraeum IMS101 (prokaryote)1pCO2 1400 µatm -NO3-33.8251507.740.022399442231781354300.2700.0796.31.31.280.301.620.200.330.034.930.21267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)1pCO2 1400 µatm +NO3-33.8251507.760.052413372237201298740.2870.0567.21.21.570.272.020.150.440.034.560.07267.6236.951297.561293.482180.4196.132313.501.542.34
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.03240815201463292210.512:120.5268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.03240815201463292220.512:120.6268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.0223994422317813543010.512:121.2267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.0223994422317813543020.512:120.1267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.03240815201463292212.512:125.9268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.03240815201463292222.512:125.3268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.0223994422317813543012.512:126.1267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.0223994422317813543022.512:126.3267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.03240815201463292214.512:126.8268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.03240815201463292224.512:126.7268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.0223994422317813543014.512:128.4267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.0223994422317813543024.512:127.2267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.03240815201463292216.512:125.8268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.03240815201463292226.512:126.5268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.0223994422317813543016.512:1210.2267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.0223994422317813543026.512:1211.1267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.03240815201463292218.512:125.0268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.03240815201463292228.512:125.6268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.0223994422317813543018.512:128.8267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.0223994422317813543028.512:126.7267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.032408152014632922110.512:121.7268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.032408152014632922210.512:122.8268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.02239944223178135430110.512:128.8267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.02239944223178135430210.512:126.0267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.032408152014632922111.512:120.6268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 380 µatm -NO3-33.8258.260.032408152014632922211.512:121.9268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.02239944223178135430111.512:125.4267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)2pCO2 1400 µatm -NO3-33.8257.740.02239944223178135430211.512:126.6267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)3, 4, 5pCO2 380 µatm -NO3-33.8258.260.032408152014632922morning1292419110.340.080.460.05211252081270911464636268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)3, 4, 5pCO2 1400 µatm -NO3-33.8257.740.02239944223178135430morning124364940.400.090.500.0121421231206692761023267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)3, 4, 5pCO2 380 µatm +NO3-33.8258.260.042389720031232510morning1351852140.360.060.460.03191212131174117668334268.129.56335.72334.661784.14248.772042.473.986.04
Trichodesmium erythraeum IMS101 (prokaryote)3, 4, 5pCO2 1400 µatm +NO3-33.8257.760.05241337223720129874morning1372739110.300.050.480.011837236128512768230267.6236.951297.561293.482180.4196.132313.501.542.34
Trichodesmium erythraeum IMS101 (prokaryote)3, 4, 5pCO2 380 µatm -NO3-33.8258.260.032408152014632922midday8925217300.170.000.410.03147719223134726360048268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)3, 4, 5pCO2 1400 µatm -NO3-33.8257.740.02239944223178135430midday7012338170.170.020.430.0316552187167426355654267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)3, 4, 5pCO2 380 µatm +NO3-33.8258.260.042389720031232510midday81282211910.160.000.330.071465176291475265664268.129.56335.72334.661784.14248.772042.473.986.04
Trichodesmium erythraeum IMS101 (prokaryote)3, 4, 5pCO2 1400 µatm +NO3-33.8257.760.05241337223720129874midday8927184320.170.020.410.0515492072103512259576267.6236.951297.561293.482180.4196.132313.501.542.34
Trichodesmium erythraeum IMS101 (prokaryote)3, 4, 5pCO2 380 µatm -NO3-33.8258.260.032408152014632922evening1311366440.160.020.430.041501018111125917356718268.129.64338.51337.451799.00250.842059.484.016.10
Trichodesmium erythraeum IMS101 (prokaryote)3, 4, 5pCO2 1400 µatm -NO3-33.8257.740.02239944223178135430evening99124851920.170.010.450.0416232137186127454934267.6038.641356.641352.372177.0291.662307.321.462.23
Trichodesmium erythraeum IMS101 (prokaryote)3, 4, 5pCO2 380 µatm +NO3-33.8258.260.042389720031232510evening10729226170.180.020.440.0214931962122328057344268.129.56335.72334.661784.14248.772042.473.986.04
Trichodesmium erythraeum IMS101 (prokaryote)3, 4, 5pCO2 1400 µatm +NO3-33.8257.760.05241337223720129874evening132374541210.190.020.420.05159322014143014155167267.6236.951297.561293.482180.4196.132313.501.542.34