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Fernández-Méndez, Mar; Peeken, Ilka; Boetius, Antje (2014): Carbon uptake rate calculated for melt pond water samples during POLARSTERN cruise ARK-XXVII/3 (IceArc) in 2012 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.834216, In supplement to: Fernández-Méndez, Mar; Katlein, Christian; Rabe, Benjamin; Nicolaus, Marcel; Peeken, Ilka; Bakker, Karel; Flores, Hauke; Boetius, Antje (2015): Photosynthetic production in the central Arctic Ocean during the record sea-ice minimum in 2012. Biogeosciences, 12, 3525-3549, https://doi.org/10.5194/bg-12-3525-2015

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Abstract:
Net Primary Production was measured using the 14**C uptake method with minor modifications. Melt pond samples were spiked with 0.1µCi ml**-1 of 14**C labelled sodium bicarbonate (Moravek Biochemicals, Brea, USA) and distributed in 10 clear bottles (20 ml each). Subsequently they were incubated for 12 h at -1.3°C under different scalar irradiances (0-420 µmol photons m**-2 s**-1) measured with a spherical sensor (Spherical Micro Quantum Sensor US-SQS/L, Heinz Walz, Effeltrich, Germany). At the end of the incubation, samples were filtered onto 0.2 µm nitrocellulose filters and the particulate radioactive carbon uptake was determined by liquid scintillation counting using Filter count scintillation cocktail (Perkin Elmer, Waltham, USA). The carbon uptake values in the dark were subtracted from the carbon uptake values measured in the light incubations. Dissolved inorganic carbon (DIC) was measured for each sample using the flow injection system (Hall and Aller, 1992). The DIC concentration was taken into account to calculate the amount of labeled bicarbonate incorporated into the cell. Carbon fixation rates were normalized volumetrically and by chlorophyll a. Photosynthesis-irradiance curves (PI curves) were fitted using MATLAB® according to the equation proposed by Platt et al. (1980) including a photoinhibition parameter (beta) and providing the main photosynthetic parameters: maximum Chla normalized carbon fixation rate if there were no photoinhibition (Pb) and the initial slope of the saturation curve (alpha). The derived parameters: light intensity at which photosynthesis is maximal (Im), the carbon fixation rate at that maximal irradiance (Pbm) and the adaptation parameter or photoacclimation index (Ik) were calculated according to Platt et al. (1982).
Source:
Bakker, Karel (2014): Nutrients measured on melt pond water samples during POLARSTERN cruise ARK-XXVII/3 (IceArc) in 2012. Royal Netherlands Institute for Sea Research, Texel, PANGAEA, https://doi.org/10.1594/PANGAEA.834282
Funding:
Seventh Framework Programme (FP7), grant/award no. 294757: Assessment of bacterial life and matter cycling in deep-sea surface sediments
Coverage:
Median Latitude: 84.660111 * Median Longitude: 81.935185 * South-bound Latitude: 81.884667 * West-bound Longitude: 17.453670 * North-bound Latitude: 88.827670 * East-bound Longitude: 131.128670
Date/Time Start: 2012-08-09T08:08:00 * Date/Time End: 2012-09-29T15:10:00
Minimum DEPTH, water: m * Maximum DEPTH, water: m
Event(s):
PS80/224-1 (Ice station #1) * Latitude Start: 84.050500 * Longitude Start: 31.113830 * Latitude End: 84.033833 * Longitude End: 31.109500 * Date/Time Start: 2012-08-09T08:08:00 * Date/Time End: 2012-08-11T12:23:00 * Elevation Start: -4013.0 m * Elevation End: -4011.0 m * Campaign: ARK-XXVII/3 (PS80 IceArc) * Basis: Polarstern * Method/Device: Ice station (ICE) * Comment: Position sensor: Ship's GPS; Wind speed start: 0.2 kn; Wind speed end: 0.2 kn; Sea ice coverage start: 95 %; Sea ice coverage end: 95 %
PS80/237-1 (Ice station #2) * Latitude Start: 83.986500 * Longitude Start: 78.103330 * Latitude End: 83.933667 * Longitude End: 75.504667 * Date/Time Start: 2012-08-14T13:10:00 * Date/Time End: 2012-08-16T18:42:00 * Elevation Start: -3484.0 m * Elevation End: -3424.0 m * Campaign: ARK-XXVII/3 (PS80 IceArc) * Basis: Polarstern * Method/Device: Ice station (ICE) * Comment: Position sensor: Ship's GPS; Wind speed start: 0.3 kn; Wind speed end: 0.6 kn; Sea ice coverage start: 90 %; Sea ice coverage end: 80 %
PS80/255-1 (Ice station #3) * Latitude Start: 82.670670 * Longitude Start: 109.589500 * Latitude End: 83.142333 * Longitude End: 109.929333 * Date/Time Start: 2012-08-20T08:48:00 * Date/Time End: 2012-08-22T11:49:00 * Elevation Start: -3569.0 m * Elevation End: -3608.0 m * Campaign: ARK-XXVII/3 (PS80 IceArc) * Basis: Polarstern * Method/Device: Ice station (ICE) * Comment: Position sensor: Ship's GPS; Wind speed start: 0.6 kn; Wind speed end: 0.9 kn; Sea ice coverage start: 95 %; Sea ice coverage end: 95 %
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Sample code/labelSample label
Optional event labelEvent 2
GearGear
DescriptionDescription
Date/Time of eventDate/Time
Latitude of eventLatitude
Longitude of eventLongitude
Date/time startDate/time start
Date/time endDate/time end
10 CommentComment
11 DEPTH, waterDepth watermGeocode
12 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 420 [µmol photons/m**2/s]
13 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 370 [µmol photons/m**2/s]
14 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 150 [µmol photons/m**2/s]
15 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 90 [µmol photons/m**2/s]
16 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 65 [µmol photons/m**2/s]
17 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 50 [µmol photons/m**2/s]
18 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 25 [µmol photons/m**2/s]
19 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 13 [µmol photons/m**2/s]
20 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 8 [µmol photons/m**2/s]
21 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 0 [µmol photons/m**2/s]
22 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 420 [µmol photons/m**2/s]
23 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 370 [µmol photons/m**2/s]
24 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 150 [µmol photons/m**2/s]
25 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 90 [µmol photons/m**2/s]
26 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 65 [µmol photons/m**2/s]
27 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 50 [µmol photons/m**2/s]
28 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 25 [µmol photons/m**2/s]
29 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 13 [µmol photons/m**2/s]
30 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 8 [µmol photons/m**2/s]
31 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 0 [µmol photons/m**2/s]
32 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedPb (Photoinhibition) [mg C/mg Chl a/h]
33 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedInitial slope alpha [mg C/mg Chl a/(µmol photons/m**2/s)/h]
34 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedPhotoinhibition [mg C/mg Chl a/(µmol photons/m**2/s)/h]
35 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedIm (light intensity at which photosynthesis is maximal) [µmol photons/m**2/s]
36 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedPbm (carbon fixation rate at that maximal irradiance) [mg C/mg Chl a/h]
37 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedAdaptation parameter Ik (or photoacclimation index calculated according to Platt et al., 1982) [µmol photons/m**2/s]
38 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedR**2
Size:
390 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Sample label

Event 2

Gear

Description

Date/Time

Latitude

Longitude

Date/time start

Date/time end
10 
Comment
11 
Depth water [m]
12 
C upt rate frac [µg/l/day]
(at light irradiance 420 [µmol...)
13 
C upt rate frac [µg/l/day]
(at light irradiance 370 [µmol...)
14 
C upt rate frac [µg/l/day]
(at light irradiance 150 [µmol...)
15 
C upt rate frac [µg/l/day]
(at light irradiance 90 [µmol ...)
16 
C upt rate frac [µg/l/day]
(at light irradiance 65 [µmol ...)
17 
C upt rate frac [µg/l/day]
(at light irradiance 50 [µmol ...)
18 
C upt rate frac [µg/l/day]
(at light irradiance 25 [µmol ...)
19 
C upt rate frac [µg/l/day]
(at light irradiance 13 [µmol ...)
20 
C upt rate frac [µg/l/day]
(at light irradiance 8 [µmol p...)
21 
C upt rate frac [µg/l/day]
(at light irradiance 0 [µmol p...)
22 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 420 [µmol...)
23 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 370 [µmol...)
24 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 150 [µmol...)
25 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 90 [µmol ...)
26 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 65 [µmol ...)
27 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 50 [µmol ...)
28 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 25 [µmol ...)
29 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 13 [µmol ...)
30 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 8 [µmol p...)
31 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 0 [µmol p...)
32 
Parameter [arbitrary units]
(Pb (Photoinhibition) [mg C/mg...)
33 
Parameter [arbitrary units]
(Initial slope alpha [mg C/mg ...)
34 
Parameter [arbitrary units]
(Photoinhibition [mg C/mg Chl ...)
35 
Parameter [arbitrary units]
(Im (light intensity at which ...)
36 
Parameter [arbitrary units]
(Pbm (carbon fixation rate at ...)
37 
Parameter [arbitrary units]
(Adaptation parameter Ik (or p...)
38 
Parameter [arbitrary units]
(R**2, Calculated)
PS80/224_HP-2_MPIce station #1HPMelt Pond2012-08-09T08:0884.0505031.113832012-08-09T09:302012-08-09T10:00meltpond 2 water sample011.8317.3014.0913.9912.169.243.300.790.0001.091.601.301.291.120.850.300.070.000798.32000.01993.5925221.60391.621781.52340.9073
PS80/237_HP-1_MPIce station #2HPMelt Pond2012-08-14T13:1083.9865078.103332012-08-14T09:002012-08-14T09:30meltpond 1 water sample00.550.830.480.220.220.350.090.050.0400.230.350.210.090.090.150.040.020.02065.02900.00150.0820785.58860.4413288.99780.9342
PS80/255_HP-3_MPIce station #3HPMelt Pond2012-08-20T08:4882.67067109.589502012-08-19T17:002012-08-19T17:30meltpond 3 water sample021.0515.1764.1764.9744.7029.921.642.7402.912.108.888.996.184.140.230.3806673.24250.152949.2178135.37587.614149.80200.7762
PS80/277_HP-3_MPIce station #4HPMelt Pond2012-08-25T10:3382.88250130.129502012-08-25T10:002012-08-25T10:30meltpond 3 water sample00.241.381.110.480.920.380.190.110.0500.251.441.160.500.960.400.190.120.050610.04840.01061.6333372.30181.4532136.96200.7623
PS80/323_HP-1_MPIce station #5HPMelt Pond2012-09-04T11:0081.92550131.128672012-09-04T09:002012-09-04T09:30meltpond 1 water sample04.264.492.654.184.073.091.000.901.2300.690.730.430.680.660.500.160.150.2001.54740.01340.0029198.64990.873465.14190.8892
PS80/335_HP-1_MPIce station #6HPMelt Pond2012-09-07T07:4785.10183122.245332012-09-07T09:002012-09-07T09:30meltpond 1 water sample00.760.790.720.660.600.360.070.040.0400.360.370.340.310.280.170.030.020.0201.38290.00450.0035252.95140.407190.51060.9382
PS80/335_HP-1_MPIce station #6HPMelt Pond2012-09-07T07:4785.10183122.245332012-09-07T09:002012-09-07T09:30meltpond 1 water sample01.781.392.291.960.470.190.510.430.7300.080.060.100.090.020.010.020.020.03034.74770.00100.1478234.33400.090286.20650.6003
PS80/349_HP-3_MPIce station #7HPMelt Pond2012-09-18T09:3887.9335061.217332012-09-18T10:002012-09-18T10:30meltpond 3 water sample026.2820.9937.0325.1026.1529.2312.5511.704.3301.130.901.591.081.121.250.540.500.1901.93670.03320.0031144.28011.411642.55160.8860
PS80/349_ICES-4Ice station #7Ice sampleIce2012-09-18T09:3887.9335061.217332012-09-17T15:002012-09-17T15:30brown ice sample 1; Bio-pond 10297.62283.48247.45328.57306.89177.29232.72151.4762.2000.380.360.320.420.390.230.300.190.0800.36610.01810.0000554.99160.366120.23580.8531
PS80/360_ICES-1Ice station #8Ice sampleIce2012-09-22T05:2488.8276758.863502012-09-22T09:002012-09-22T10:00brown ice sample158.0294.1882.2190.6372.8786.9144.3720.560.0700.070.110.100.110.090.100.050.020.0000.13620.00290.0001144.27010.111238.83520.5449
PS80/360_HP-3_MPIce station #8HPMelt Pond2012-09-22T05:2488.8276758.863502012-09-22T10:002012-09-22T10:30meltpond 3 water sample06.837.987.227.946.517.134.911.750.7002.042.382.162.371.942.131.470.520.2102.52570.07210.0009152.18082.354532.65420.9422
PS80/384_ICES-4Ice station #9Ice sampleNew Ice2012-09-28T12:2384.3748317.4536705.878.422.522.314.181.113.692.1500.751.070.320.290.530.140.470.000.2700.97200.00550.00004645.84570.9720177.09660.5725