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Fernández-Méndez, Mar; Peeken, Ilka; Boetius, Antje (2014): Carbon uptake rate calculated for sea-ice core samples during POLARSTERN cruise ARK-XXVII/3 (IceArc) in 2012 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.834215, In supplement to: Fernández-Méndez, Mar; Katlein, Christian; Rabe, Benjamin; Nicolaus, Marcel; Peeken, Ilka; Bakker, Karel; Flores, Hauke; Boetius, Antje (2015): Photosynthetic production in the central Arctic Ocean during the record sea-ice minimum in 2012. Biogeosciences, 12, 3525-3549, https://doi.org/10.5194/bg-12-3525-2015

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Abstract:
Net Primary Production was measured using the 14**C uptake method with minor modifications. Melted sea ice samples were spiked with 0.1µCi ml**-1 of 14**C labelled sodium bicarbonate (Moravek Biochemicals, Brea, USA) and distributed in 10 clear bottles (20 ml each). Subsequently they were incubated for 12 h at -1.3°C under different scalar irradiances (0-420 µmol photons m**-2 s**-1) measured with a spherical sensor (Spherical Micro Quantum Sensor US-SQS/L, Heinz Walz, Effeltrich, Germany). At the end of the incubation, samples were filtered onto 0.2 µm nitrocellulose filters and the particulate radioactive carbon uptake was determined by liquid scintillation counting using Filter count scintillation cocktail (Perkin Elmer, Waltham, USA). The carbon uptake values in the dark were subtracted from the carbon uptake values measured in the light incubations. Dissolved inorganic carbon (DIC) was measured for each sample using the flow injection system (Hall and Aller, 1992). The DIC concentration was taken into account to calculate the amount of labeled bicarbonate incorporated into the cell. Carbon fixation rates were normalized volumetrically and by chlorophyll a. Photosynthesis-irradiance curves (PI curves) were fitted using MATLAB® according to the equation proposed by Platt et al. (1980) including a photoinhibition parameter (beta) and providing the main photosynthetic parameters: maximum Chla normalized carbon fixation rate if there were no photoinhibition (Pb) and the initial slope of the saturation curve (alpha). The derived parameters: light intensity at which photosynthesis is maximal (Im), the carbon fixation rate at that maximal irradiance (Pbm) and the adaptation parameter or photoacclimation index (Ik) were calculated according to Platt et al. (1982).
Source:
Bakker, Karel (2014): Nutrients measured on sea-ice core samples during POLARSTERN cruise ARK-XXVII/3 (IceArc) in 2012. PANGAEA, https://doi.org/10.1594/PANGAEA.834084
Funding:
Seventh Framework Programme (FP7), grant/award no. 294757: Assessment of bacterial life and matter cycling in deep-sea surface sediments
Coverage:
Median Latitude: 84.660111 * Median Longitude: 81.935185 * South-bound Latitude: 81.884667 * West-bound Longitude: 17.453670 * North-bound Latitude: 88.827670 * East-bound Longitude: 131.128670
Date/Time Start: 2012-08-09T08:08:00 * Date/Time End: 2012-09-29T15:10:00
Minimum DEPTH, ice/snow: 0.2000 m * Maximum DEPTH, ice/snow: 1.4630 m
Event(s):
PS80/224-1 (Ice station #1) * Latitude Start: 84.050500 * Longitude Start: 31.113830 * Latitude End: 84.033833 * Longitude End: 31.109500 * Date/Time Start: 2012-08-09T08:08:00 * Date/Time End: 2012-08-11T12:23:00 * Elevation Start: -4013.0 m * Elevation End: -4011.0 m * Campaign: ARK-XXVII/3 (PS80 IceArc) * Basis: Polarstern * Method/Device: Ice station (ICE) * Comment: Position sensor: Ship's GPS; Wind speed start: 0.2 kn; Wind speed end: 0.2 kn; Sea ice coverage start: 95 %; Sea ice coverage end: 95 %
PS80/237-1 (Ice station #2) * Latitude Start: 83.986500 * Longitude Start: 78.103330 * Latitude End: 83.933667 * Longitude End: 75.504667 * Date/Time Start: 2012-08-14T13:10:00 * Date/Time End: 2012-08-16T18:42:00 * Elevation Start: -3484.0 m * Elevation End: -3424.0 m * Campaign: ARK-XXVII/3 (PS80 IceArc) * Basis: Polarstern * Method/Device: Ice station (ICE) * Comment: Position sensor: Ship's GPS; Wind speed start: 0.3 kn; Wind speed end: 0.6 kn; Sea ice coverage start: 90 %; Sea ice coverage end: 80 %
PS80/255-1 (Ice station #3) * Latitude Start: 82.670670 * Longitude Start: 109.589500 * Latitude End: 83.142333 * Longitude End: 109.929333 * Date/Time Start: 2012-08-20T08:48:00 * Date/Time End: 2012-08-22T11:49:00 * Elevation Start: -3569.0 m * Elevation End: -3608.0 m * Campaign: ARK-XXVII/3 (PS80 IceArc) * Basis: Polarstern * Method/Device: Ice station (ICE) * Comment: Position sensor: Ship's GPS; Wind speed start: 0.6 kn; Wind speed end: 0.9 kn; Sea ice coverage start: 95 %; Sea ice coverage end: 95 %
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Sample code/labelSample label
Optional event labelEvent 2
GearGear
DescriptionDescription
Latitude of eventLatitude
Longitude of eventLongitude
Date/Time of eventDate/Time
Date/time startDate/time start
CommentComment
10 DEPTH, ice/snowDepth ice/snowmGeocode
11 Depth, top/minDepth topm
12 Depth, bottom/maxDepth botm
13 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 420 [µmol photons/m**2/s]
14 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 370 [µmol photons/m**2/s]
15 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 150 [µmol photons/m**2/s]
16 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 90 [µmol photons/m**2/s]
17 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 65 [µmol photons/m**2/s]
18 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 50 [µmol photons/m**2/s]
19 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 25 [µmol photons/m**2/s]
20 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 13 [µmol photons/m**2/s]
21 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 8 [µmol photons/m**2/s]
22 Carbon uptake rate, fractionatedC upt rate fracµg/l/dayBoetius, AntjeMeasuredat light irradiance 0 [µmol photons/m**2/s]
23 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 420 [µmol photons/m**2/s]
24 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 370 [µmol photons/m**2/s]
25 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 150 [µmol photons/m**2/s]
26 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 90 [µmol photons/m**2/s]
27 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 65 [µmol photons/m**2/s]
28 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 50 [µmol photons/m**2/s]
29 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 25 [µmol photons/m**2/s]
30 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 13 [µmol photons/m**2/s]
31 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 8 [µmol photons/m**2/s]
32 Carbon uptake rate, fractionated per chlorophyll aC upt rate frac norm chl amg/mg/hBoetius, AntjeMeasuredat light irradiance 0 [µmol photons/m**2/s]
33 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedPb (Photoinhibition) [mg C/mg Chl a/h]
34 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedInitial slope alpha [mg C/mg Chl a/(µmol photons/m**2/s)/h]
35 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedPhotoinhibition [mg C/mg Chl a/(µmol photons/m**2/s)/h]
36 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedIm (light intensity at which photosynthesis is maximal) [µmol photons/m**2/s]
37 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedPbm (carbon fixation rate at that maximal irradiance) [mg C/mg Chl a/h]
38 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedAdaptation parameter Ik (or photoacclimation index calculated according to Platt et al., 1982) [µmol photons/m**2/s]
39 ParameterParameterarbitrary unitsBoetius, AntjeCalculatedR**2
Size:
557 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Sample label

Event 2

Gear

Description

Latitude

Longitude

Date/Time

Date/time start

Comment
10 
Depth ice/snow [m]
11 
Depth top [m]
12 
Depth bot [m]
13 
C upt rate frac [µg/l/day]
(at light irradiance 420 [µmol...)
14 
C upt rate frac [µg/l/day]
(at light irradiance 370 [µmol...)
15 
C upt rate frac [µg/l/day]
(at light irradiance 150 [µmol...)
16 
C upt rate frac [µg/l/day]
(at light irradiance 90 [µmol ...)
17 
C upt rate frac [µg/l/day]
(at light irradiance 65 [µmol ...)
18 
C upt rate frac [µg/l/day]
(at light irradiance 50 [µmol ...)
19 
C upt rate frac [µg/l/day]
(at light irradiance 25 [µmol ...)
20 
C upt rate frac [µg/l/day]
(at light irradiance 13 [µmol ...)
21 
C upt rate frac [µg/l/day]
(at light irradiance 8 [µmol p...)
22 
C upt rate frac [µg/l/day]
(at light irradiance 0 [µmol p...)
23 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 420 [µmol...)
24 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 370 [µmol...)
25 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 150 [µmol...)
26 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 90 [µmol ...)
27 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 65 [µmol ...)
28 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 50 [µmol ...)
29 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 25 [µmol ...)
30 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 13 [µmol ...)
31 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 8 [µmol p...)
32 
C upt rate frac norm chl a [mg/mg/h]
(at light irradiance 0 [µmol p...)
33 
Parameter [arbitrary units]
(Pb (Photoinhibition) [mg C/mg...)
34 
Parameter [arbitrary units]
(Initial slope alpha [mg C/mg ...)
35 
Parameter [arbitrary units]
(Photoinhibition [mg C/mg Chl ...)
36 
Parameter [arbitrary units]
(Im (light intensity at which ...)
37 
Parameter [arbitrary units]
(Pbm (carbon fixation rate at ...)
38 
Parameter [arbitrary units]
(Adaptation parameter Ik (or p...)
39 
Parameter [arbitrary units]
(R**2, Calculated)
PS80/224_CORE-BAT-1_2Ice station #1Sea Ice CorerIce Top84.0505031.113832012-08-092012-08-09ice core PS80/224_CORE-BAT-1 (total length=1.13 m) pooled with ice core PS80/224_CORE-BAT-2 (total length=1.14 m)0.28500.0000.5707.791.267.016.735.214.262.511.010.740.000.810.130.720.700.540.440.260.100.080.00377.52660.01232.2679166.01410.749761.07310.8344
PS80/224_CORE-BAT-1_2Ice station #1Sea Ice CorerIce Bottom84.0505031.113832012-08-092012-08-09ice core PS80/224_CORE-BAT-1 (core total length=1.13 m) pooled with ice core PS80/224_CORE-BAT-2 (core total length=1.14 m)0.85500.5701.1400.111.250.151.990.000.681.090.510.480.210.000.040.000.060.000.020.040.020.020.01
PS80/237_CORE-BAT-1Ice station #2Sea Ice CorerIce Top83.9865078.103332012-08-142012-08-14core total length=1.35 m0.33750.0000.6750.750.750.830.750.650.300.380.110.000.010.080.080.080.080.070.030.040.010.000.000.14020.00130.0002208.28090.088665.84650.9252
PS80/237_CORE-BAT-1Ice station #2Sea Ice CorerIce Bottom83.9865078.103332012-08-142012-08-14core total length=1.35 m1.01250.6751.3502.863.413.602.652.252.151.921.890.050.000.070.090.090.070.060.050.050.050.000.000.07970.00210.0000245.96440.078936.80070.8214
PS80/255_CORE-BAT-1Ice station #3Sea Ice CorerIce Top82.67067109.589502012-08-202012-08-20core total length=0.9 m0.22500.0000.450-0.010.910.790.690.610.430.200.090.040.000.000.110.100.080.070.050.020.010.000.000.15630.00140.0001271.69470.112380.84220.8401
PS80/255_CORE-BAT-1Ice station #3Sea Ice CorerIce Bottom82.67067109.589502012-08-202012-08-20core total length=0.9 m0.67500.4500.9002.352.272.652.142.321.540.760.470.150.000.100.100.120.090.100.070.030.020.010.000.18400.00190.0003202.33880.120563.06790.9701
PS80/277_CORE-BAT-1Ice station #4Sea Ice CorerIce Top82.88250130.129502012-08-252012-08-25core total length=0.92 m0.23000.0000.4600.160.220.240.180.180.130.050.020.010.000.060.080.090.060.060.050.020.010.010.0081.95150.00120.3925208.48210.088376.69620.9612
PS80/277_CORE-BAT-1Ice station #4Sea Ice CorerIce Bottom82.88250130.129502012-08-252012-08-25core total length=0.92 m0.69000.4600.9201.691.431.421.441.341.160.930.390.190.000.130.110.110.110.110.090.070.030.020.000.12110.00360.0000876.91600.121133.98730.9666
PS80/323_CORE-BAT-1Ice station #5Sea Ice CorerIce Top81.92550131.128672012-09-042012-09-04core total length=0.81 m0.20000.0000.4000.890.480.100.670.450.450.180.070.010.000.210.110.020.160.100.110.040.020.000.0098.93800.00260.5655174.57010.166364.22070.7622
PS80/323_CORE-BAT-1Ice station #5Sea Ice CorerIce Bottom81.92550131.128672012-09-042012-09-04core total length=0.81 m0.60500.4000.8100.280.290.140.190.250.160.070.070.020.000.040.040.020.030.030.020.010.010.000.000.03860.00060.0000402.56260.038259.68220.8742
PS80/335_CORE-BAT-1Ice station #6Sea Ice CorerIce Top85.10183122.245332012-09-072012-09-07core total length=0.8 m0.20000.0000.4000.531.181.011.391.170.970.620.340.150.000.070.150.130.170.150.120.080.040.020.000.23050.00430.0005121.51050.157837.10400.8411
PS80/335_CORE-BAT-1Ice station #6Sea Ice CorerIce Bottom85.10183122.245332012-09-072012-09-07core total length=0.8 m0.60500.4000.8100.620.600.730.700.530.570.300.200.110.000.050.050.060.060.040.050.030.020.010.000.07850.00140.0001162.80900.062345.07170.9838
PS80/349_CORE-BAT-1Ice station #7Sea Ice CorerIce Top87.9335061.217332012-09-182012-09-18core total length=1.25 m0.31250.0000.6251.601.831.631.701.841.841.580.830.410.000.040.050.040.050.050.050.040.020.010.000.05140.00270.000099.19600.049718.30160.9402
PS80/349_CORE-BAT-1Ice station #7Sea Ice CorerIce Bottom87.9335061.217332012-09-182012-09-18core total length=1.25 m0.93750.6251.25098.0923.3154.26113.10118.29111.275.8394.8537.860.000.500.120.280.570.600.570.030.480.190.00
PS80/360_CORE-BAT-1Ice station #8Sea Ice CorerIce Top88.8276758.863502012-09-222012-09-22core total length=1.95 m0.48800.0000.9750.490.620.460.700.300.760.450.280.180.000.040.050.040.050.020.060.040.020.010.000.04590.00260.000096.23040.044617.19570.6550
PS80/360_CORE-BAT-1Ice station #8Sea Ice CorerIce Bottom88.8276758.863502012-09-222012-09-22core total length=1.95 m1.46300.9751.9500.820.260.100.22-0.030.160.290.570.130.000.000.000.000.000.000.000.000.000.000.00
PS80/384_CORE-BAT-1Ice station #9Sea Ice CorerIce84.3748317.453672012-09-282012-09-28core total length=0.84 m0.42000.0000.8400.700.750.700.740.650.800.690.540.370.000.040.040.040.040.030.040.040.030.020.000.03970.00380.000071.81270.039410.24980.8946