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Kim, Hyewon; Spivack, Arthur J; Menden-Deuer, Susanne (2013): Seawater carbonate chemistry and swimming behaviors of the raphidophyte Heterosigma akashiwo in a laboratory experiment [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.830804, Supplement to: Kim, H et al. (2013): pH alters the swimming behaviors of the raphidophyte Heterosigma akashiwo: Implications for bloom formation in an acidified ocean. Harmful Algae, 26, 1-11, https://doi.org/10.1016/j.hal.2013.03.004

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Abstract:
We investigated the effects of pH on movement behaviors of the harmful algal bloom causing raphidophyte Heterosigma akashiwo. Motility parameters from >8000 swimming tracks of individual cells were quantified using 3D digital video analysis over a 6-h period in 3 pH treatments reflecting marine carbonate chemistry during the pre-industrial era, currently, and the year 2100. Movement behaviors were investigated in two different acclimation-to-target-pH conditions: instantaneous exposure and acclimation of cells for at least 11 generations. There was no negative impairment of cell motility when exposed to elevated PCO2 (i.e., low pH) conditions but there were significant behavioral responses. Irrespective of acclimation condition, lower pH significantly increased downward velocity and frequency of downward swimming cells (p < 0.001). Rapid exposure to lower pH resulted in 9% faster downward vertical velocity and up to 19% more cells swimming downwards (p < 0.001). Compared to pH-shock experiments, pre-acclimation of cells to target pH resulted in ~30% faster swimming speed and up to 46% faster downward velocities (all p < 0.001). The effect of year 2100 PCO2 levels on population diffusivity in pre-acclimated cultures was >2-fold greater than in pH-shock treatments (2.2 × 105 µm**2/s vs. 8.4 × 104 µm**2/s). Predictions from an advection-diffusion model, suggest that as PCO2 increased the fraction of the population aggregated at the surface declined, and moved deeper in the water column. Enhanced downward swimming of H. akashiwo at low pH suggests that these behavioral responses to elevated PCO2 could reduce the likelihood of dense surface slick formation of H. akashiwo through reductions in light exposure or growth independent surface aggregations. We hypothesize that the HAB alga's response to higher PCO2 may exploit the signaling function of high PCO2 as indicative of net heterotrophy in the system, thus indicative of high predation rates or depletion of nutrients.
Keyword(s):
Behaviour; Bottles or small containers/Aquaria (<20 L); Chromista; Growth/Morphology; Heterosigma akashiwo; Laboratory experiment; Laboratory strains; North Atlantic; Ochrophyta; Pelagos; Phytoplankton; Single species
Further details:
Lavigne, Héloïse; Gattuso, Jean-Pierre (2011): seacarb: seawater carbonate chemistry with R. R package version 2.4. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2014-03-21.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
IdentificationIDMenden-Deuer, Susanne
SpeciesSpeciesMenden-Deuer, Susanne
TreatmentTreatMenden-Deuer, Susanne
Incubation durationInc durdaysMenden-Deuer, Susanne
Growth rateµ1/dayMenden-Deuer, Susanne
Growth rate, standard errorµ std e±Menden-Deuer, Susanne
Cells equivalent spherical diameterESDcmMenden-Deuer, Susanne
Cells equivalent spherical diameter, standard errorESD std e±Menden-Deuer, Susanne
Speed, swimmingSp swimµm/sMenden-Deuer, Susanne
10 Speed, swimming, standard errorSp swim std e±Menden-Deuer, Susanne
11 Rate of turnROTdeg/minMenden-Deuer, Susanne
12 Rate of turn, standard errorROT std e±Menden-Deuer, Susanne
13 Velocity, verticalV vertcm/sMenden-Deuer, Susanneup
14 Velocity, vertical, standard errorV vert std e±Menden-Deuer, Susanneup
15 Velocity, verticalV vertcm/sMenden-Deuer, Susannedown
16 Velocity, vertical, standard errorV vert std e±Menden-Deuer, Susannedown
17 PercentagePerc%Menden-Deuer, Susanneupward population
18 PercentagePerc%Menden-Deuer, Susannedownward population
19 DiffusivityDiffusivityµm2/sMenden-Deuer, Susanne
20 TracksTracks#Menden-Deuer, Susanneupward
21 TracksTracks#Menden-Deuer, Susannedownward
22 DeclinationDecldegMenden-Deuer, Susanneupward
23 Declination, standard errorDecl std e±Menden-Deuer, Susanneupward
24 DeclinationDecldegMenden-Deuer, Susannedownward
25 Declination, standard errorDecl std e±Menden-Deuer, Susannedownward
26 LengthlmmMenden-Deuer, Susanneup diff
27 LengthlmmMenden-Deuer, Susannedown diff
28 SalinitySalMenden-Deuer, Susanne
29 Temperature, waterTemp°CMenden-Deuer, Susanne
30 Carbon, inorganic, dissolvedDICµmol/kgMenden-Deuer, Susannebefore experiment
31 Carbon, inorganic, dissolved, standard errorDIC std e±Menden-Deuer, Susannebefore experiment
32 Alkalinity, totalATµmol/kgMenden-Deuer, SusannePotentiometric titrationbefore experiment
33 Alkalinity, total, standard errorAT std e±Menden-Deuer, SusannePotentiometric titrationbefore experiment
34 Carbon, inorganic, dissolvedDICµmol/kgMenden-Deuer, Susanneafter experiment
35 Carbon, inorganic, dissolved, standard errorDIC std e±Menden-Deuer, Susanneafter experiment
36 Alkalinity, totalATµmol/kgMenden-Deuer, SusannePotentiometric titrationafter experiment
37 Alkalinity, total, standard errorAT std e±Menden-Deuer, SusannePotentiometric titrationafter experiment
38 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)before experiment, total scale
40 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)before experiment
41 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)before experiment
42 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)before experiment
43 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)before experiment
44 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)before experiment
45 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)before experiment
46 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)before experiment
47 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)after experiment, total scale
48 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)after experiment
49 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)after experiment
50 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)after experiment
51 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)after experiment
52 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)after experiment
53 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)after experiment
54 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)after experiment
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1389 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


ID

Species

Treat

Inc dur [days]

µ [1/day]

µ std e [±]

ESD [cm]

ESD std e [±]

Sp swim [µm/s]
10 
Sp swim std e [±]
11 
ROT [deg/min]
12 
ROT std e [±]
13 
V vert [cm/s]
(up)
14 
V vert std e [±]
(up)
15 
V vert [cm/s]
(down)
16 
V vert std e [±]
(down)
17 
Perc [%]
(upward population)
18 
Perc [%]
(downward population)
19 
Diffusivity [µm2/s]
20 
Tracks [#]
(upward)
21 
Tracks [#]
(downward)
22 
Decl [deg]
(upward)
23 
Decl std e [±]
(upward)
24 
Decl [deg]
(downward)
25 
Decl std e [±]
(downward)
26 
l [mm]
(up diff)
27 
l [mm]
(down diff)
28 
Sal
29 
Temp [°C]
30 
DIC [µmol/kg]
(before experiment)
31 
DIC std e [±]
(before experiment)
32 
AT [µmol/kg]
(before experiment, Potentiome...)
33 
AT std e [±]
(before experiment, Potentiome...)
34 
DIC [µmol/kg]
(after experiment)
35 
DIC std e [±]
(after experiment)
36 
AT [µmol/kg]
(after experiment, Potentiomet...)
37 
AT std e [±]
(after experiment, Potentiomet...)
38 
CSC flag
(Calculated using seacarb afte...)
39 
pH
(before experiment, total scal...)
40 
CO2 [µmol/kg]
(before experiment, Calculated...)
41 
pCO2water_SST_wet [µatm]
(before experiment, Calculated...)
42 
fCO2water_SST_wet [µatm]
(before experiment, Calculated...)
43 
[HCO3]- [µmol/kg]
(before experiment, Calculated...)
44 
[CO3]2- [µmol/kg]
(before experiment, Calculated...)
45 
Omega Arg
(before experiment, Calculated...)
46 
Omega Cal
(before experiment, Calculated...)
47 
pH
(after experiment, total scale...)
48 
CO2 [µmol/kg]
(after experiment, Calculated ...)
49 
pCO2water_SST_wet [µatm]
(after experiment, Calculated ...)
50 
fCO2water_SST_wet [µatm]
(after experiment, Calculated ...)
51 
[HCO3]- [µmol/kg]
(after experiment, Calculated ...)
52 
[CO3]2- [µmol/kg]
(after experiment, Calculated ...)
53 
Omega Arg
(after experiment, Calculated ...)
54 
Omega Cal
(after experiment, Calculated ...)
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 280 ppm10.1541630140.1010237120.0012551670.00001216730.531518336199221828619293158.011539739517021161.802.837.85225825801725811.261.98
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 280 ppm20.4697995160.0619436570.0012531110.00000876130.531518336199221828619293158.011539739517021161.802.837.85225825801725811.261.98
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 280 ppm30.4490306130.0217425820.0012826670.00001447730.531518336199221828619293158.011539739517021161.802.837.85225825801725811.261.98
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 280 ppm40.5378137880.0451243950.0012761110.00001023030.531518336199221828619293158.011539739517021161.802.837.85225825801725811.261.98
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 280 ppm50.4815231040.0152203530.0012763330.00000750630.531518336199221828619293158.011539739517021161.802.837.85225825801725811.261.98
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 280 ppm60.4252211790.0382824550.0012691110.00000578130.531518336199221828619293158.011539739517021161.802.837.85225825801725811.261.98
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 280 ppm70.4676279470.0148339270.0012732220.00000997530.531518336199221828619293158.011539739517021161.802.837.85225825801725811.261.98
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 380 ppm10.2869881140.0281648480.0012755560.00002451430.531519241203611909919625157.87225805771812901.402.207.68359049011817580.901.42
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 380 ppm20.4784769260.1325270640.0012724440.00002309830.531519241203611909919625157.87225805771812901.402.207.68359049011817580.901.42
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 380 ppm30.5392330240.0124346220.0013008890.00001561430.531519241203611909919625157.87225805771812901.402.207.68359049011817580.901.42
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 380 ppm40.5590118150.0143879060.0012736670.00000466730.531519241203611909919625157.87225805771812901.402.207.68359049011817580.901.42
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 380 ppm50.4976097520.0321299290.0012994440.00001305930.531519241203611909919625157.87225805771812901.402.207.68359049011817580.901.42
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 380 ppm60.5137319340.0553729460.0012926670.00001585730.531519241203611909919625157.87225805771812901.402.207.68359049011817580.901.42
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 380 ppm70.5649331400.0502620450.0012980000.00001068230.531519241203611909919625157.87225805771812901.402.207.68359049011817580.901.42
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 750 ppm10.2332948390.0248929300.0012272220.00001623230.531519812204121949219775157.70348928891884630.981.547.5844114811441858480.741.17
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 750 ppm20.3819081470.0486741830.0012373330.00000718330.531519812204121949219775157.70348928891884630.981.547.5844114811441858480.741.17
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 750 ppm30.4226267490.0673709620.0012927780.00001111630.531519812204121949219775157.70348928891884630.981.547.5844114811441858480.741.17
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 750 ppm40.5680305080.0432029410.0012844440.00000875730.531519812204121949219775157.70348928891884630.981.547.5844114811441858480.741.17
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 750 ppm50.6188034220.0122777330.0013602780.00006202230.531519812204121949219775157.70348928891884630.981.547.5844114811441858480.741.17
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 750 ppm60.5212150580.0083755220.0012747780.00000930230.531519812204121949219775157.70348928891884630.981.547.5844114811441858480.741.17
Figure 1Heterosigma akashiwo (phytoplankton)Pre-acclimation 750 ppm70.6788822690.0435095040.0012763330.00001251830.531519812204121949219775157.70348928891884630.981.547.5844114811441858480.741.17
Figure 2, 3, 5Heterosigma akashiwo (phytoplankton)pH-shock 280 ppm1100.0000037342390.0764.2300.00680.000004799-0.00780.00000556032.153567.84657970230.531518343199611833719405158.011539038917021171.832.887.86215595571727841.322.07
Figure 2, 3, 5Heterosigma akashiwo (phytoplankton)pH-shock 380 ppm1120.0000033182543.6404.1340.00630.000006143-0.00760.00000633021.835078.16508286130.5315191632029218621019636157.87225725701804901.402.217.84235985961757821.272.00
Figure 2, 3, 5Heterosigma akashiwo (phytoplankton)pH-shock 750 ppm1190.0000056532319.0665.4720.00520.000013965-0.00830.00001336612.507987.49218719330.531519913204031912819752157.66389829791896580.901.427.71328338301817630.981.54
Figure 2, 3, 5Heterosigma akashiwo (phytoplankton)Pre-acclimation 280 ppm1510.0000037232520.8343.4740.01040.000004428-0.01120.00000494241.176958.823118000030.531518336199221828619293158.011539739517021161.802.837.85225825801725811.261.98
Figure 2, 3, 5Heterosigma akashiwo (phytoplankton)Pre-acclimation 380 ppm1500.0000037902688.7504.0140.01130.000004779-0.01110.00000473044.218955.781121000030.531519241203611909919625157.87225805771812901.402.207.68359049011817580.901.42
Figure 2, 3, 5Heterosigma akashiwo (phytoplankton)Pre-acclimation 750 ppm1460.0000033122531.4663.2100.01090.000005263-0.00980.00000482424.602475.397622000030.531519812204121949219775157.70348928891884630.981.547.5844114811441858480.741.17
Figure 4Heterosigma akashiwo (phytoplankton)pH-shock 280 ppm21262522.144585991.329936306149.27961780.77388535030.531518343199611833719405158.011539038917021171.832.887.86215595571727841.322.07
Figure 4Heterosigma akashiwo (phytoplankton)pH-shock 380 ppm19689431.236305731.817197452150.20828030.61337579630.5315191632029218621019636157.87225725701804901.402.217.84235985961757821.272.00
Figure 4Heterosigma akashiwo (phytoplankton)pH-shock 750 ppm5643845.063057323.749044586149.30828030.94012738930.531519913204031912819752157.66389829791896580.901.427.71328338301817630.981.54
Figure 4Heterosigma akashiwo (phytoplankton)Pre-acclimation 280 ppm704128417.472611460.550318471155.66560510.45859872630.531518336199221828619293158.011539739517021161.802.837.85225825801725811.261.98
Figure 4Heterosigma akashiwo (phytoplankton)Pre-acclimation 380 ppm749108715.460509550.487261146156.84076430.47006369430.531519241203611909919625157.87225805771812901.402.207.68359049011817580.901.42
Figure 4Heterosigma akashiwo (phytoplankton)Pre-acclimation 750 ppm564202517.409554140.693630573150.01337580.41273885430.531519812204121949219775157.70348928891884630.981.547.5844114811441858480.741.17
Figure 6Heterosigma akashiwo (phytoplankton)pH-shock 280 ppm24.4249380836.2074025630.531518343199611833719405158.011539038917021171.832.887.86215595571727841.322.07
Figure 6Heterosigma akashiwo (phytoplankton)pH-shock 380 ppm28.6307527034.6361660730.5315191632029218621019636157.87225725701804901.402.217.84235985961757821.272.00
Figure 6Heterosigma akashiwo (phytoplankton)pH-shock 750 ppm45.8621412536.5330535330.531519913204031912819752157.66389829791896580.901.427.71328338301817630.981.54
Figure 6Heterosigma akashiwo (phytoplankton)Pre-acclimation 280 ppm26.6907624535.8727751930.531518336199221828619293158.011539739517021161.802.837.85225825801725811.261.98
Figure 6Heterosigma akashiwo (phytoplankton)Pre-acclimation 380 ppm25.2392551432.5596068830.531519241203611909919625157.87225805771812901.402.207.68359049011817580.901.42
Figure 6Heterosigma akashiwo (phytoplankton)Pre-acclimation 750 ppm21.7777684848.8578345830.531519812204121949219775157.70348928891884630.981.547.5844114811441858480.741.17