Citation:

PANGAEA.830605

Name: Seawater carbonate chemistry, calcification and organic matter of Mediterranean red coral (Corallium rubrum) in a laboratory experiment
Published: 2013
License: https://creativecommons.org/licenses/by/3.0/
Keywords: Animalia; Benthic animals; Benthos; Calcification/Dissolution; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Corallium rubrum; Growth/Morphology; Laboratory experiment; Mediterranean Sea; Single species; Temperate

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Keyword(s):

Animalia; Benthic animals; Benthos; Calcification/Dissolution; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Corallium rubrum; Growth/Morphology; Laboratory experiment; Mediterranean Sea; Single species; Temperate

Related to:

Bramanti, Lorenzo; Movilla, Juancho; Guron, Maricel; Calvo, Eva; Gori, Andrea; Dominguez-Cariò, Carlos; Grinyó, Jordi; Lopez-Sanz, Angel; Martinez-Quintana, Angela; Pelejero, Carles; Ziveri, Patrizia; Rossi, Sergio (2013): Detrimental effects of ocean acidification on the economically important Mediterranean red coral (Corallium rubrum). Global Change Biology, 19(6), 1897-1908, https://doi.org/10.1111/gcb.12171

Original version:

Bramanti, Lorenzo; Movilla, Juancho; Guron, Maricel; Calvo, Eva; Gori, Andrea; Dominguez-Cariò, Carlos; Grinyó, Jordi; Lopez-Sanz, Angel; Martinez-Quintana, Angela; Pelejero, Carles; Ziveri, Patrizia; Rossi, Sergio (2013): Effects of Ocean Acidification on calcification and biochemical balance of the Mediterranean red coral Corallium rubrum. PANGAEA, https://doi.org/10.1594/PANGAEA.819362

Further details:

Lavigne, Héloïse; Gattuso, Jean-Pierre (2011): seacarb: seawater carbonate chemistry with R. R package version 2.4. https://cran.r-project.org/package=seacarb

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 42.284270 * Longitude: 3.299020

Date/Time Start: 2011-01-17T00:00:00 * Date/Time End: 2011-09-19T00:00:00

Minimum ORDINAL NUMBER: 1 * Maximum ORDINAL NUMBER: 240

Event(s):

Cap-de-Creus * Latitude: 42.284270 * Longitude: 3.299020 * Elevation Start: -35.0 m * Elevation End: -40.0 m * Location: Mediterranean Sea * Method/Device: Experiment (EXP) * Comment: Sampling colonies of Corallium rubrum

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2014-03-13.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Species	Species		Bramanti, Lorenzo
2	Treatment	Treat		Bramanti, Lorenzo
3	Aquarium number	Aquarium		Bramanti, Lorenzo
4	Dry mass	Dry m	g	Bramanti, Lorenzo		2011-11-09
5	Dry mass	Dry m	g	Bramanti, Lorenzo		2010-12-30
6	Calcification rate of calcium carbonate	Calc rate CaCO3	mg/g/day	Bramanti, Lorenzo	Buoyant weighing technique according to Davies (1989)
7	DATE/TIME	Date/Time				Geocode
8	Sample comment	Sample comment		Bramanti, Lorenzo
9	Number	No		Bramanti, Lorenzo
10	Colony number/ID	Colony no/ID		Bramanti, Lorenzo
11	Sample mass	Samp m	g	Bramanti, Lorenzo
12	Foil mass	Foil m	g	Bramanti, Lorenzo
13	Mass	Mass	g	Bramanti, Lorenzo		initial, sample + foil
14	Mass	Mass	g	Bramanti, Lorenzo		final, dried weight + foil
15	Inorganic matter	IM	g	Bramanti, Lorenzo		dried weight
16	Organic matter	OM	g	Bramanti, Lorenzo		dried weight
17	Inorganic matter	IM	%	Bramanti, Lorenzo
18	Organic matter	OM	%	Bramanti, Lorenzo
19	Ratio	Ratio		Bramanti, Lorenzo		OM/Sample weight
20	Organic matter	OM	g	Bramanti, Lorenzo		mean
21	Organic matter, standard deviation	OM std dev	±	Bramanti, Lorenzo
22	ORDINAL NUMBER	Ord No				Geocode
23	Circularity	Circularity		Bramanti, Lorenzo		ratio between the area of the sclerite and the area of a circle with the same perimeter
24	Area/perimeter ratio	Area/perimeter		Bramanti, Lorenzo
25	Height/width ratio	Height/width		Bramanti, Lorenzo
26	Comment	Comment		Bramanti, Lorenzo
27	Salinity	Sal		Bramanti, Lorenzo
28	Temperature, water	Temp	°C	Bramanti, Lorenzo
29	pH	pH		Bramanti, Lorenzo	Potentiometric	total scale
30	Alkalinity, total	AT	µmol/kg	Bramanti, Lorenzo	Potentiometric titration
31	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Bramanti, Lorenzo	Calculated using CO2calc
32	xCO2 (ambient atmosphere, dry air)	xCO2air	µmol/mol	Bramanti, Lorenzo	Calculated using CO2calc
33	Carbon, inorganic, dissolved	DIC	µmol/kg	Bramanti, Lorenzo	Calculated using CO2calc
34	Carbon dioxide	CO2	µmol/kg	Bramanti, Lorenzo	Calculated using CO2calc
35	Bicarbonate ion	[HCO3]-	µmol/kg	Bramanti, Lorenzo	Calculated using CO2calc
36	Carbonate ion	[CO3]2-	µmol/kg	Bramanti, Lorenzo	Calculated using CO2calc
37	Calcite saturation state	Omega Cal		Bramanti, Lorenzo	Calculated using CO2calc
38	Aragonite saturation state	Omega Arg		Bramanti, Lorenzo	Calculated using CO2calc
39	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
40	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
41	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
42	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
43	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
44	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
45	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
46	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
47	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
48	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

13721 data points

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