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Jin, Peng; Gao, Kunshan; Villafañe, Virginia E; Campbell, Douglas A; Helbling, E Walter (2013): Seawater carbonate chemistry and photosynthesis of a coccolithophorid in a laboratory experiment [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.830526, Supplement to: Jin, P et al. (2013): Ocean Acidification Alters the Photosynthetic Responses of a Coccolithophorid to Fluctuating Ultraviolet and Visible Radiation. Plant Physiology, 162(4), 2084-2094, https://doi.org/10.1104/pp.113.219543

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Abstract:
Mixing of seawater subjects phytoplankton to fluctuations in photosynthetically active radiation (400-700 nm) and ultraviolet radiation (UVR; 280-400 nm). These irradiance fluctuations are now superimposed upon ocean acidification and thinning of the upper mixing layer through stratification, which alters mixing regimes. Therefore, we examined the photosynthetic carbon fixation and photochemical performance of a coccolithophore, Gephyrocapsa oceanica, grown under high, future (1,000 µatm) and low, current (390 µatm) CO2 levels, under regimes of fluctuating irradiances with or without UVR. Under both CO2 levels, fluctuating irradiances, as compared with constant irradiance, led to lower nonphotochemical quenching and less UVR-induced inhibition of carbon fixation and photosystem II electron transport. The cells grown under high CO2 showed a lower photosynthetic carbon fixation rate but lower nonphotochemical quenching and less ultraviolet B (280-315 nm)-induced inhibition. Ultraviolet A (315-400 nm) led to less enhancement of the photosynthetic carbon fixation in the high-CO2-grown cells under fluctuating irradiance. Our data suggest that ocean acidification and fast mixing or fluctuation of solar radiation will act synergistically to lower carbon fixation by G. oceanica, although ocean acidification may decrease ultraviolet B-related photochemical inhibition.
Keyword(s):
Bottles or small containers/Aquaria (<20 L); Chromista; Gephyrocapsa oceanica; Haptophyta; Laboratory experiment; Laboratory strains; Light; North Pacific; Pelagos; Phytoplankton; Primary production/Photosynthesis; Single species
Further details:
Lavigne, Héloïse; Gattuso, Jean-Pierre (2011): seacarb: seawater carbonate chemistry with R. R package version 2.4. https://cran.r-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2014-03-03.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1SpeciesSpeciesJin, Peng
2IdentificationIDJin, Peng
3TreatmentTreatJin, PengLC=low pCO2, HC=high pCO2
4ReplicatesRepl#Jin, Peng
5WavelengthLambdanmJin, Peng
6Light absorption by phytoplankton per chlorophyll aa_ph/chlm2/mgJin, Peng
7ExperimentExpJin, Peng
8Time in minutesTimeminJin, Pengincubation time
9Electron transport rate, absoluteaETRmol/g/hJin, Peng
10Electron transport, absolute, cumulativeCum absETRmol/gJin, Peng
11IrradianceEµmol/m2/sJin, Peng
12Time in minutesTimeminJin, Pengcycle time
13DescriptionDescriptionJin, Peng
14Effective absorbance cross-section of photosystem IIsigma PSIIA2/quantaJin, Peng
15Non photochemical quenchingNPQJin, Peng
16Primary productionPPµg/µg/hJin, Pengper chl a
17Ultraviolet radiation-induced inhibition of photosynthesisUVR-induced inhibition of PN%Jin, Peng
18Primary production, cumulativePP cumµg/µgJin, Pengper chl a
19Primary production of carbonPP C%Jin, Peng
20PercentagePerc%Jin, Pengrelative absETR
21SalinitySalJin, Peng
22Temperature, waterTemp°CJin, Peng
23Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmJin, Pengbefore renewal
24Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Jin, Pengbefore renewal
25pHpHJin, PengPotentiometricbefore renewal, NBS scale
26pH, standard deviationpH std dev±Jin, PengPotentiometricbefore renewal, NBS scale
27Carbon, inorganic, dissolvedDICµmol/kgJin, PengCalculated using CO2SYSbefore renewal
28Carbon, inorganic, dissolved, standard deviationDIC std dev±Jin, PengCalculated using CO2SYSbefore renewal
29Bicarbonate ion[HCO3]-µmol/kgJin, PengCalculated using CO2SYSbefore renewal
30Bicarbonate ion, standard deviation[HCO3]- std dev±Jin, PengCalculated using CO2SYSbefore renewal
31Carbonate ion[CO3]2-µmol/kgJin, PengCalculated using CO2SYSbefore renewal
32Carbonate ion, standard deviation[CO3]2- std dev±Jin, PengCalculated using CO2SYSbefore renewal
33Carbon dioxideCO2µmol/kgJin, PengCalculated using CO2SYSbefore renewal
34Alkalinity, totalATµmol/kgJin, PengCalculated using CO2SYSbefore renewal
35Alkalinity, total, standard deviationAT std dev±Jin, PengCalculated using CO2SYSbefore renewal
36Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)before renewal
37pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)before renewal, total scale
38Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)before renewal
39Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)before renewal
40Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)before renewal
41Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)before renewal
42Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)before renewal
43Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)before renewal
44Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)before renewal
45Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)before renewal
46Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmJin, Pengafter renewal
47Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Jin, Pengafter renewal
48pHpHJin, PengPotentiometricafter renewal, NBS scale
49pH, standard deviationpH std dev±Jin, PengPotentiometricafter renewal, NBS scale
50Carbon, inorganic, dissolvedDICµmol/kgJin, PengCalculated using CO2SYSafter renewal
51Carbon, inorganic, dissolved, standard deviationDIC std dev±Jin, PengCalculated using CO2SYSafter renewal
52Bicarbonate ion[HCO3]-µmol/kgJin, PengCalculated using CO2SYSafter renewal
53Bicarbonate ion, standard deviation[HCO3]- std dev±Jin, PengCalculated using CO2SYSafter renewal
54Carbonate ion[CO3]2-µmol/kgJin, PengCalculated using CO2SYSafter renewal
55Carbonate ion, standard deviation[CO3]2- std dev±Jin, PengCalculated using CO2SYSafter renewal
56Carbon dioxideCO2µmol/kgJin, PengCalculated using CO2SYSafter renewal
57Alkalinity, totalATµmol/kgJin, PengCalculated using CO2SYSafter renewal
58Alkalinity, total, standard deviationAT std dev±Jin, PengCalculated using CO2SYSafter renewal
59Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)after renewal
60pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)after renewal, total scale
61Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)after renewal
62Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)after renewal
63Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)after renewal
64Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)after renewal
65Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)after renewal
66Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)after renewal
67Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)after renewal
68Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)after renewal
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
138064 data points

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