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PANGAEA.
Data Publisher for Earth & Environmental Science

Long, Philip E; Williams, Kenneth H; Davis, James A; Fox, Patricia M; Wilkins, Michael J; Yabusaki, Steven B; Fang, Yilin; Waichler, Scott R; Berman, Elena S F; Gupta, Manish; Chandler, Darrell P; Murray, Chris; Peacock, Aaron D; Giloteaux, Ludovic; Handley, Kim M; Lovley, Derek R; Banfield, Jillian F (2015): (Tab 3) Signal to noise ratio (SNR) by genus for microarray probes in an alluvial aquifer along the Colorado River in Rifle, Colorado, USA [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.830271, In supplement to: Long, PE et al. (2015): Bicarbonate impact on U(VI) bioreduction in a shallow alluvial aquifer. Geochimica et Cosmochimica Acta, 150, 106-124, https://doi.org/10.1016/j.gca.2014.11.013

Always quote citation above when using data! You can download the citation in several formats below.

RIS CitationBibTeX CitationShow MapGoogle Earth

Related to:
Bao, Chen; Wu, Hongfei; Li, Li; Williams, Kenneth H; Newcomer, Darrell; Long, Philip E (2014): Uranium bioreduction rates across ccales: Biogeochemical “Hot Moments” and “Hot Spots” during a field biostimulation experiment at Rifle, Colorado. Environmental Science & Technology, 48(17), 10116-10127, https://doi.org/10.1021/es501060d
Chandler, Darrell P; Knickerbocker, Christopher; Bryant, Lexi; Golova, Julia; Wiles, Cory; Williams, Kenneth H; Peacock, Aaron D; Long, Philip E (2012): Profiling In Situ Microbial Community Structure with an Amplification Microarray. Applied and Environmental Microbiology, 79(3), 799-807, https://doi.org/10.1128/AEM.02664-12
Coverage:
Median Latitude: 39.528879 * Median Longitude: -107.771803 * South-bound Latitude: 39.528843 * West-bound Longitude: -107.771850 * North-bound Latitude: 39.528956 * East-bound Longitude: -107.771757
Date/Time Start: 2006-09-08T00:00:00 * Date/Time End: 2006-10-27T00:00:00
Minimum ELEVATION: 1619.29 m a.s.l. * Maximum ELEVATION: 1619.37 m a.s.l.
Event(s):
Rilfe * Latitude: 39.528950 * Longitude: -107.771870 * Date/Time Start: 2010-06-01T00:00:00 * Date/Time End: 2011-01-01T00:00:00 * Elevation: 1619.0 m * Location: Colorado, U.S.A., North America * Method/Device: Sampling Well (WELL)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Sample code/labelSample labelLong, Philip EWell
LATITUDELatitudeGeocode
LONGITUDELongitudeGeocode
Depth, relativeDepth relmLong, Philip EBorehole depth
ELEVATIONElevationm a.s.l.Geocode
Elevation 2Elev2m a.s.l.Long, Philip ETop of casing
DATE/TIMEDate/TimeGeocode
Signal/noise ratioSNRLong, Philip ECalculatedDesulfitobacterium, 8 probes per genus
Signal/noise ratioSNRLong, Philip ECalculatedDesulfoarculus, 1 probes per genus
10 Signal/noise ratioSNRLong, Philip ECalculatedDesulfobacter, 4 probes per genus
11 Signal/noise ratioSNRLong, Philip ECalculatedDesulfobacterium, 2 probes per genus
12 Signal/noise ratioSNRLong, Philip ECalculatedDesulfobulbus, 1 probes per genus
13 Signal/noise ratioSNRLong, Philip ECalculatedDesulfomicrobium , 1 probes per genus
14 Signal/noise ratioSNRLong, Philip ECalculatedDesulfotomaculum, 11 probes per genus
15 Signal/noise ratioSNRLong, Philip ECalculatedDesulfovibrio, 10 probes per genus
16 Signal/noise ratioSNRLong, Philip ECalculatedDesulfuromonas, 5 probes per genus
17 Signal/noise ratioSNRLong, Philip ECalculatedDesulfuromusa, 1 probes per genus
18 Signal/noise ratioSNRLong, Philip ECalculatedAnaeromyxobacter, 1 probes per genus
19 Signal/noise ratioSNRLong, Philip ECalculatedFe-oxidizer TW2, 1 probes per genus
20 Signal/noise ratioSNRLong, Philip ECalculatedFerribacterium, 1 probes per genus
21 Signal/noise ratioSNRLong, Philip ECalculatedFlexibacter, 5 probes per genus
22 Signal/noise ratioSNRLong, Philip ECalculatedGeobacter, 22 probes per genus
23 Signal/noise ratioSNRLong, Philip ECalculatedGeothrix, 2 probes per genus
24 Signal/noise ratioSNRLong, Philip ECalculatedGeovibrio, 1 probes per genus
25 Signal/noise ratioSNRLong, Philip ECalculatedPelobacter, 4 probes per genus
26 Signal/noise ratioSNRLong, Philip ECalculatedRhodoferax, 2 probes per genus
27 Signal/noise ratioSNRLong, Philip ECalculatedShewanella, 5 probes per genus
28 Signal/noise ratioSNRLong, Philip ECalculatedAcetobacterium, 2 probes per genus
29 Signal/noise ratioSNRLong, Philip ECalculatedClostridium, 8 probes per genus
30 Signal/noise ratioSNRLong, Philip ECalculatedMoorella, 1 probes per genus
31 Signal/noise ratioSNRLong, Philip ECalculatedSporomusa, 1 probes per genus
32 Signal/noise ratioSNRLong, Philip ECalculatedtotal
33 DateDateLong, Philip EMaximum
34 Signal/noise ratioSNRLong, Philip ECalculatedSulfate reducers
35 Signal/noise ratioSNRLong, Philip ECalculatedMetal reducers
36 Signal/noise ratioSNRLong, Philip ECalculatedFermentors
Size:
2386 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Sample label
(Well)

Latitude

Longitude

Depth rel [m]
(Borehole depth)

Elevation [m a.s.l.]

Elev2 [m a.s.l.]
(Top of casing)

Date/Time

SNR
(Desulfitobacterium, 8 probes ...)

SNR
(Desulfoarculus, 1 probes per ...)
10 
SNR
(Desulfobacter, 4 probes per g...)
11 
SNR
(Desulfobacterium, 2 probes pe...)
12 
SNR
(Desulfobulbus, 1 probes per g...)
13 
SNR
(Desulfomicrobium , 1 probes p...)
14 
SNR
(Desulfotomaculum, 11 probes p...)
15 
SNR
(Desulfovibrio, 10 probes per ...)
16 
SNR
(Desulfuromonas, 5 probes per ...)
17 
SNR
(Desulfuromusa, 1 probes per g...)
18 
SNR
(Anaeromyxobacter, 1 probes pe...)
19 
SNR
(Fe-oxidizer TW2, 1 probes per...)
20 
SNR
(Ferribacterium, 1 probes per ...)
21 
SNR
(Flexibacter, 5 probes per genus)
22 
SNR
(Geobacter, 22 probes per genus)
23 
SNR
(Geothrix, 2 probes per genus)
24 
SNR
(Geovibrio, 1 probes per genus)
25 
SNR
(Pelobacter, 4 probes per genus)
26 
SNR
(Rhodoferax, 2 probes per genus)
27 
SNR
(Shewanella, 5 probes per genus)
28 
SNR
(Acetobacterium, 2 probes per ...)
29 
SNR
(Clostridium, 8 probes per genus)
30 
SNR
(Moorella, 1 probes per genus)
31 
SNR
(Sporomusa, 1 probes per genus)
32 
SNR
(total)
33 
Date
(Maximum)
34 
SNR
(Sulfate reducers)
35 
SNR
(Metal reducers)
36 
SNR
(Fermentors)
CU-0139.528956-107.7717605.791619.331619.572006-09-210.000.000.000.000.000.0040.870.000.000.000.000.000.000.000.004.190.000.000.000.000.002.070.000.0047.122010-09-2240.874.192.07
CU-0139.528956-107.7717605.791619.331619.572006-10-070.000.000.000.000.000.0025.990.000.000.000.000.002.770.000.000.000.000.004.510.000.000.000.000.0033.272010-10-0825.997.280.00
CU-0139.528956-107.7717605.791619.331619.572006-10-200.000.000.000.000.000.0023.490.000.000.000.000.000.000.000.000.000.000.000.000.000.006.360.000.0029.852010-10-2123.490.006.36
CU-0139.528956-107.7717605.791619.331619.572006-10-2714.674.060.000.000.000.0019.950.000.000.000.000.009.960.000.000.000.000.0011.690.000.000.000.000.0060.322010-10-2838.6821.640.00
CD-0239.528890-107.7717756.101619.311619.512006-09-210.000.000.000.000.000.00122.972.640.000.000.000.000.000.0038.040.000.0014.120.0010.760.007.930.000.00196.452010-09-22125.6162.917.93
CD-0239.528890-107.7717756.101619.311619.512006-09-280.000.000.000.000.000.00104.230.000.000.000.000.002.550.007.320.000.0019.000.000.000.0022.070.000.00155.172010-09-29104.2328.8722.07
CD-0239.528890-107.7717756.101619.311619.512006-10-200.000.000.000.000.000.00183.400.000.000.000.000.0039.680.0023.500.000.0058.930.000.000.0056.820.000.00362.332010-10-21183.40122.1056.82
CD-0239.528890-107.7717756.101619.311619.512006-10-270.000.000.000.000.000.00138.420.000.000.000.000.006.680.0033.120.000.0057.960.000.000.0030.210.000.00266.392010-10-28138.4297.7630.21
CD-0339.528892-107.7717996.401619.321619.452006-09-210.0037.970.000.000.000.007.080.000.000.000.000.002.850.0011.960.000.0014.880.000.000.0038.9510.060.00123.772010-09-2245.0529.7049.01
CD-0439.528865-107.7717577.011619.291619.482006-09-210.000.000.000.000.000.0030.560.000.000.006.840.000.002.5327.630.000.0010.810.000.000.0035.170.000.00113.542010-09-2230.5647.8135.17
CD-0539.528867-107.7717806.711619.311619.422006-09-080.000.000.000.000.000.006.000.000.000.000.000.002.870.0060.652.060.000.000.000.000.006.800.000.0078.372010-09-096.0065.576.80
CD-0539.528867-107.7717806.711619.311619.422006-09-210.000.000.000.000.000.0016.130.000.000.000.000.0013.270.0023.740.000.0011.330.000.000.0011.470.000.0075.932010-09-2216.1348.3411.47
CD-0539.528867-107.7717806.711619.311619.422006-09-288.140.000.002.330.000.005.640.000.000.000.000.000.000.0021.432.070.0012.530.005.080.0010.850.000.0068.082010-09-2916.1141.1210.85
CD-0539.528867-107.7717806.711619.311619.422006-10-070.000.000.000.000.000.0064.180.000.000.000.000.004.230.0013.860.000.0017.550.000.000.0040.680.000.00140.492010-10-0864.1835.6340.68
CD-0539.528867-107.7717806.711619.311619.422006-10-200.000.003.210.000.000.00372.250.002.130.000.000.0011.570.008.060.000.0012.890.000.000.0097.800.000.00507.922010-10-21377.6032.5297.80
CD-0539.528867-107.7717806.711619.311619.422006-10-270.000.000.000.000.000.00113.270.000.000.000.000.006.810.006.620.000.005.630.000.000.0068.130.000.00200.462010-10-28113.2719.0668.13
CD-0739.528843-107.7717606.401619.291619.432006-09-214.390.000.000.000.000.006.070.000.000.000.000.002.010.0014.080.000.0013.180.000.000.0017.530.000.0057.252010-09-2210.4529.2717.53
CD-0739.528843-107.7717606.401619.291619.432006-09-283.350.000.000.000.000.0016.080.000.000.000.000.004.060.0016.490.000.006.740.000.000.0020.850.000.0067.572010-09-2919.4327.2920.85
CD-0739.528843-107.7717606.401619.291619.432006-10-072.790.000.000.000.000.00121.690.000.000.000.000.000.000.005.480.000.008.510.000.000.0020.330.000.00158.812010-10-08124.4813.9920.33
CD-0739.528843-107.7717606.401619.291619.432006-10-206.210.000.000.000.000.00246.210.000.000.000.000.000.000.000.000.000.000.000.000.000.00108.410.000.00360.832010-10-21252.410.00108.41
CD-0739.528843-107.7717606.401619.291619.432006-10-270.000.000.000.000.000.00224.690.000.000.000.000.000.000.000.000.000.000.000.000.000.0019.750.000.00244.442010-10-28224.690.0019.75
CD-0839.528846-107.7717836.101619.311619.512006-09-086.090.000.000.000.000.0093.680.000.000.000.000.009.710.0044.560.000.005.260.000.000.006.190.000.00165.492010-09-0999.7759.536.19
CD-0839.528846-107.7717836.101619.311619.512006-09-210.000.000.000.000.000.0027.250.000.000.000.000.0021.960.0018.580.000.006.085.360.000.0010.460.000.0089.682010-09-2227.2551.9810.46
CD-0839.528846-107.7717836.101619.311619.512006-09-280.000.000.000.000.000.0017.300.000.000.000.000.0015.300.005.670.000.000.008.270.000.002.610.000.0049.142010-09-2917.3029.242.61
CD-0839.528846-107.7717836.101619.311619.512006-10-070.000.000.000.000.000.0024.070.000.000.000.000.0012.460.0016.380.000.004.003.890.0012.5314.530.000.0087.852010-10-0824.0736.7327.06
CD-0839.528846-107.7717836.101619.311619.512006-10-200.000.002.600.000.000.0092.560.002.740.000.000.003.403.8425.570.000.000.000.000.0010.8416.462.040.00160.052010-10-2197.9032.8129.34
CD-0839.528846-107.7717836.101619.311619.512006-10-270.000.000.000.000.000.00129.296.290.000.000.000.006.670.002.060.000.000.000.000.0060.5716.610.000.00221.502010-10-28135.588.7377.19
CD-0939.528848-107.7718075.791619.311619.422006-09-089.430.000.000.000.000.008.130.000.000.000.000.005.880.0030.160.000.000.000.000.000.006.750.000.0060.352010-09-0917.5636.046.75
CD-0939.528848-107.7718075.791619.311619.422006-09-213.110.000.000.000.000.008.560.000.000.000.000.0013.570.0039.410.000.004.620.000.000.009.500.000.0078.762010-09-2211.6757.609.50
CD-0939.528848-107.7718075.791619.311619.422006-09-282.130.000.000.000.000.0021.970.000.000.000.000.007.190.0025.182.410.007.250.002.250.0022.050.000.0090.432010-09-2924.1044.2822.05
CD-0939.528848-107.7718075.791619.311619.422006-10-072.120.000.000.000.000.00112.710.000.000.000.000.003.210.002.600.000.002.060.000.000.0061.880.000.00184.582010-10-08114.837.8761.88
CD-0939.528848-107.7718075.791619.311619.422006-10-2029.386.5524.280.007.750.0080.950.0016.650.000.000.002.690.002.440.000.005.060.000.006.6753.100.000.00235.522010-10-21165.5510.1959.77
CD-0939.528848-107.7718075.791619.311619.422006-10-270.000.000.000.000.000.00109.300.000.000.000.000.000.000.000.000.000.000.000.000.000.0020.410.000.00129.712010-10-28109.300.0020.41
CD-1039.528885-107.7718156.401619.351619.502006-09-210.000.000.000.000.000.0046.050.000.000.000.000.000.000.0029.534.770.0033.350.000.000.0063.710.000.00177.412010-09-2246.0567.6463.71
CD-1039.528885-107.7718156.401619.351619.502006-09-280.000.000.000.000.000.00103.314.320.000.000.000.000.000.0015.940.000.0025.590.000.000.0027.330.000.00176.492010-09-29107.6341.5327.33
CD-1039.528885-107.7718156.401619.351619.502006-10-070.000.000.000.000.000.00127.620.000.000.000.000.000.000.004.470.000.0019.300.000.000.0026.540.000.00177.932010-10-08127.6223.7726.54
CD-1039.528885-107.7718156.401619.351619.502006-10-200.000.000.000.000.000.0091.870.000.000.000.000.000.000.005.640.000.002.610.000.000.00132.020.000.00232.142010-10-2191.878.25132.02
CD-1039.528885-107.7718156.401619.351619.502006-10-270.000.000.000.000.000.00138.164.060.000.000.000.000.000.000.000.000.002.580.000.000.00157.470.000.00302.272010-10-28142.222.58157.47
CD-1139.528909-107.7718275.791619.361619.512006-09-084.740.000.000.000.000.0068.130.000.003.990.000.000.002.3630.220.000.0014.424.490.000.0072.110.000.00200.472010-09-0976.8651.5072.11
CD-1139.528909-107.7718275.791619.361619.512006-09-210.000.000.000.000.000.0033.420.000.000.000.000.000.000.0025.920.000.0026.630.000.000.0010.620.000.0096.592010-09-2233.4252.5510.62
CD-1139.528909-107.7718275.791619.361619.512006-09-280.000.000.000.000.000.00163.312.100.000.000.000.002.590.0026.310.000.0041.170.000.000.0049.690.000.00285.172010-09-29165.4270.0649.69
CD-1139.528909-107.7718275.791619.361619.512006-10-070.000.000.000.000.000.00102.450.000.000.000.000.000.000.000.000.000.005.480.000.000.0016.040.000.00123.972010-10-08102.455.4816.04
CD-1139.528909-107.7718275.791619.361619.512006-10-200.000.007.199.207.760.00196.170.0013.577.140.000.000.000.000.000.000.000.000.000.000.0037.223.650.00281.892010-10-21241.020.0040.87
CD-1139.528909-107.7718275.791619.361619.512006-10-270.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.002010-10-280.000.000.00
CD-1439.528896-107.7718396.101619.371619.632006-09-210.000.000.000.000.000.0050.520.000.000.000.000.007.190.0032.220.000.0016.740.000.000.0075.990.000.00182.652010-09-2250.5256.1475.99
CD-1439.528896-107.7718396.101619.371619.632006-09-280.000.000.000.000.000.00186.380.000.000.000.000.000.000.007.550.000.0023.020.000.000.004.130.000.00221.082010-09-29186.3830.574.13
CD-1439.528896-107.7718396.101619.371619.632006-10-070.000.000.000.000.000.0093.950.000.000.000.000.000.003.424.660.000.0029.490.000.000.0016.360.000.00147.882010-10-0893.9537.5716.36
CD-1439.528896-107.7718396.101619.371619.632006-10-200.000.000.000.000.000.00175.470.000.000.000.000.002.183.267.780.000.0019.190.000.000.0034.160.000.00242.032010-10-21175.4732.4134.16
CD-1439.528896-107.7718396.101619.371619.632006-10-270.000.000.000.000.000.00121.520.000.000.000.000.002.590.009.380.000.0010.310.000.000.0017.530.000.00161.332010-10-28121.5222.2817.53
CD-1639.528878-107.7718326.401619.341619.502006-09-080.000.000.000.000.000.005.750.000.000.000.000.000.002.018.660.000.000.000.000.000.006.870.000.0023.292010-09-095.7510.686.87
CD-1639.528878-107.7718326.401619.341619.502006-09-210.000.000.000.000.000.0023.320.000.000.000.000.000.000.007.020.000.005.880.000.000.0072.290.000.00108.522010-09-2223.3212.9172.29
CD-1639.528878-107.7718326.401619.341619.502006-09-280.000.000.000.000.000.0068.352.390.000.000.000.002.790.0017.850.000.0015.040.000.000.0031.280.000.00137.692010-09-2970.7335.6831.28
CD-1639.528878-107.7718326.401619.341619.502006-10-070.000.000.000.000.000.00144.136.880.000.000.000.000.000.000.000.000.002.680.000.000.0022.440.000.00176.122010-10-08151.012.6822.44
CD-1639.528878-107.7718326.401619.341619.502006-10-200.000.004.250.000.000.00145.290.000.000.000.000.000.000.000.000.000.000.000.000.000.0061.450.000.00210.982010-10-21149.530.0061.45
CD-1639.528878-107.7718326.401619.341619.502006-10-270.000.000.000.000.000.00230.450.002.510.000.000.000.000.000.000.000.000.000.000.000.00130.920.000.00363.882010-10-28232.960.00130.92
CD-1739.528880-107.7718506.401619.371619.522006-09-210.000.000.000.000.000.0051.750.000.000.000.000.000.000.009.700.000.005.700.000.000.0059.760.000.00126.912010-09-2251.7515.4059.76
CD-1739.528880-107.7718506.401619.371619.522006-09-280.000.000.000.000.000.0060.760.000.000.000.000.003.584.9227.400.000.0020.010.000.000.0033.500.000.00150.182010-09-2960.7655.9133.50
CD-1739.528880-107.7718506.401619.371619.522006-10-070.000.000.000.000.000.00181.070.000.000.000.000.000.002.023.000.000.004.660.000.000.0019.830.000.00210.582010-10-08181.079.6819.83
CD-1739.528880-107.7718506.401619.371619.522006-10-200.002.782.400.000.000.00329.330.004.880.000.000.000.000.004.360.000.004.092.922.860.00161.360.000.00514.982010-10-21339.3914.23161.36
CD-1739.528880-107.7718506.401619.371619.522006-10-270.000.000.000.000.000.00252.570.002.090.000.000.000.000.002.320.000.000.000.000.000.00130.910.000.00387.902010-10-28254.672.32130.91
Unknown2006-09-280.000.000.000.000.000.0024.830.000.000.000.000.000.003.330.000.000.000.000.000.000.0013.532.170.0043.872010-09-2924.833.3315.71
Unknown2006-09-280.000.000.000.000.000.0085.570.000.000.000.000.000.000.0010.860.000.0014.640.000.000.0032.120.000.00143.202010-09-2985.5725.5032.12
Positive control, Big Rusty0.000.000.000.000.000.009.630.000.000.000.000.0010.710.0045.500.000.000.000.000.000.002.490.000.0068.349.6356.212.49
Positive control, Big Rusty0.000.000.000.000.000.009.800.000.000.000.000.0010.622.2747.430.000.000.000.002.340.003.280.000.0075.749.8062.663.28
Positive control, Big Rusty0.000.000.000.000.0011.7111.120.0011.840.000.002.2411.110.0044.750.000.000.000.000.000.003.450.000.0096.2034.6658.103.45
Positive control, Big Rusty0.000.000.000.000.000.006.530.000.000.000.000.0010.720.0035.780.000.000.000.000.000.002.420.000.0055.446.5346.502.42
Positive control, Big Rusty0.000.000.000.000.000.0017.6311.980.000.000.000.0013.169.6067.260.000.000.000.0019.720.003.430.000.00142.7829.62109.743.43
Positive control, Big Rusty0.000.000.000.000.000.006.880.000.000.003.260.009.000.0044.240.000.000.000.000.000.003.060.000.0066.456.8856.513.06
Positive control, Big Rusty0.000.000.000.000.000.003.390.000.000.000.000.008.090.0019.940.000.000.000.000.000.000.000.000.0031.413.3928.020.00
Negative control0.000.000.000.000.000.007.750.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.007.757.750.000.00
Negative control0.000.000.000.000.000.000.000.000.000.000.000.000.000.002.742.390.000.000.000.000.000.000.000.005.130.005.130.00
Negative control0.000.000.000.000.000.000.003.630.000.000.000.000.000.002.780.000.000.000.000.000.000.000.000.006.413.632.780.00
Negative control0.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.00
Negative control0.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.00
Negative control0.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.004.060.000.000.000.004.060.004.060.00
Negative control0.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.000.00