Long, Philip E; Williams, Kenneth H; Davis, James A; Fox, Patricia M; Wilkins, Michael J; Yabusaki, Steven B; Fang, Yilin; Waichler, Scott R; Berman, Elena S F; Gupta, Manish; Chandler, Darrell P; Murray, Chris; Peacock, Aaron D; Giloteaux, Ludovic; Handley, Kim M; Lovley, Derek R; Banfield, Jillian F (2015): (Tab 2) Average signal to noise ratio (SNR) for individual microarray probes in an alluvial aquifer along the Colorado River in Rifle, Colorado, USA [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.830270, In supplement to: Long, PE et al. (2015): Bicarbonate impact on U(VI) bioreduction in a shallow alluvial aquifer. Geochimica et Cosmochimica Acta, 150, 106-124, https://doi.org/10.1016/j.gca.2014.11.013
Always quote citation above when using data! You can download the citation in several formats below.
DOI registered: 2014-04-01 • Published: 2015 (exact date unknown)
Related to:
Bao, Chen; Wu, Hongfei; Li, Li; Williams, Kenneth H; Newcomer, Darrell; Long, Philip E (2014): Uranium bioreduction rates across ccales: Biogeochemical “Hot Moments” and “Hot Spots” during a field biostimulation experiment at Rifle, Colorado. Environmental Science & Technology, 48(17), 10116-10127, https://doi.org/10.1021/es501060d
Chandler, Darrell P; Knickerbocker, Christopher; Bryant, Lexi; Golova, Julia; Wiles, Cory; Williams, Kenneth H; Peacock, Aaron D; Long, Philip E (2012): Profiling In Situ Microbial Community Structure with an Amplification Microarray. Applied and Environmental Microbiology, 79(3), 799-807, https://doi.org/10.1128/AEM.02664-12
Coverage:
Median Latitude: 39.528879 * Median Longitude: -107.771803 * South-bound Latitude: 39.528843 * West-bound Longitude: -107.771850 * North-bound Latitude: 39.528956 * East-bound Longitude: -107.771757
Date/Time Start: 2006-09-08T00:00:00 * Date/Time End: 2006-10-27T00:00:00
Minimum ELEVATION: 1619.29 m a.s.l. * Maximum ELEVATION: 1619.37 m a.s.l.
Event(s):
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Sample code/label | Sample label | Long, Philip E | MI No. | ||
| 2 | Sample code/label | Sample label | Long, Philip E | Well | ||
| 3 | LATITUDE | Latitude | Geocode | |||
| 4 | LONGITUDE | Longitude | Geocode | |||
| 5 | Depth, relative | Depth rel | m | Long, Philip E | Borehole depth | |
| 6 | ELEVATION | Elevation | m a.s.l. | Geocode | ||
| 7 | Elevation 2 | Elev2 | m a.s.l. | Long, Philip E | Top of casing | |
| 8 | DATE/TIME | Date/Time | Geocode | |||
| 9 | Fluorescent dye, Cyanine 3 | Cy3 | arbitrary light units | Long, Philip E | ||
| 10 | 20-mer oligonucleotide | dN20 | arbitrary light units | Long, Philip E | dN = deoxyribonucleotide, the letter N is the IUPAC symbol for all of the bases in DNA (A,C,G, and T), and 20 is the length of the oligonucleotide (in bases) | |
| 11 | Hybridization marker | H | arbitrary light units | Long, Philip E | ||
| 12 | Signal/noise ratio | SNR | Long, Philip E | Calculated | total | |
| 13 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Sulfate reducers | |
| 14 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Metal reducers | |
| 15 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Fermentors | |
| 16 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter | |
| 17 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfitobacterium chlororespirans | |
| 18 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfitobacterium clone 2 X95972 | |
| 19 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfitobacterium dehalogenans | |
| 20 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfitobacterium dichloroeliminans | |
| 21 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfitobacterium frappieri | |
| 22 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfitobacterium hafniense DCB-2T | |
| 23 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfitobacterium metallireducens | |
| 24 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfitobacterium sp. PCE-S | |
| 25 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfoarculus baarsi | |
| 26 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfobacter curvatus | |
| 27 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfobacter elongatus | |
| 28 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfobacter hydrogenophilus | |
| 29 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfobacter postgateia | |
| 30 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfobacterium cetonicum AJ237603 | |
| 31 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfobacterium phenolicum DSM3384 | |
| 32 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfobulbus rhabdoformis | |
| 33 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfomicrobium norvegicum | |
| 34 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfotomaculum acetoxidans | |
| 35 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfotomaculum acetoxidans | |
| 36 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfotomaculum alkaliphilum | |
| 37 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfotomaculum carboxydivorans strain CO-1-SRB AY961415 | |
| 38 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfotomaculum guttoideum | |
| 39 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfotomaculum halophilum | |
| 40 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfotomaculum orientis | |
| 41 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfotomaculum putei SMCC W464 | |
| 42 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfotomaculum reducens | |
| 43 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfotomaculum sp. strain ASRB-Zg | |
| 44 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfotomaculum thermobenzoicum | |
| 45 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfovibrio bastinii | |
| 46 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfovibrio caledoniensis | |
| 47 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfovibrio dechloroacetivorans | |
| 48 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfovibrio desulfuricans | |
| 49 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfovibrio gabonensis | |
| 50 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfovibrio longreachii | |
| 51 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfovibrio profundus | |
| 52 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfovibrio senezii | |
| 53 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfovibrio sulfodismutans | |
| 54 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfovibrio vulgaris | |
| 55 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfuromonas acetexigens | |
| 56 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfuromonas acetoxidans | |
| 57 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfuromonas chloroethenica | |
| 58 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfuromonas michiganensis | |
| 59 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfuromonas palmitatis | |
| 60 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Desulfuromusa bakii | |
| 61 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Anaeromyxobacter dehalogenans strain 2CP-1 AF382396 | |
| 62 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Fe-oxidizing beta proteobacterium sp. TW2 (Eric Roden isolate) | |
| 63 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Ferribacterium limneticum (and Dechloromonas aromatica) | |
| 64 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Flexibacter canadensis | |
| 65 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Flexibacter flexilis | |
| 66 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Flexibacter litoralis | |
| 67 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Flexibacter polymorphus | |
| 68 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Flexibacter roseolus | |
| 69 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter Ala-5 and Ala-6 | |
| 70 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter argillaceus | |
| 71 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter bemidjiensis | |
| 72 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter bremensis | |
| 73 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter CdA-2 and CdA-3 | |
| 74 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter chapelleii | |
| 75 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter grbicium and metallireducens | |
| 76 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter hephaestius | |
| 77 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter humireducens | |
| 78 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter hydrogenophilus | |
| 79 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter lovleyii | |
| 80 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter pelophilus | |
| 81 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter pickeringii | |
| 82 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter SBD-1 | |
| 83 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter sp. CLFeRB | |
| 84 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter sp. JW-3 | |
| 85 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter sp. M18 | |
| 86 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter sp. M21 | |
| 87 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter sp. Ply1 | |
| 88 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter sp. Ply4 | |
| 89 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter sulfurreducens | |
| 90 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geobacter uraniumreducens | |
| 91 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geothrix fermentans | |
| 92 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geothrix fermentans U41563 | |
| 93 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Geovibrio ferrireductans | |
| 94 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Pelobacter acetylenicus | |
| 95 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Pelobacter carbinolicus | |
| 96 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Pelobacter propionicus | |
| 97 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Pelobacter venetianus | |
| 98 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Rhodoferax fermentans | |
| 99 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Rhodoferax ferrireducens | |
| 100 | Signal/noise ratio | SNR | Long, Philip E | Calculated | S. putrefaciens ACAM-574 (AF006670) | |
| 101 | Signal/noise ratio | SNR | Long, Philip E | Calculated | S. putrefaciens U91549, S. baltica | |
| 102 | Signal/noise ratio | SNR | Long, Philip E | Calculated | S.oneidensis SP-32 and SP-7, S.putrefaciens | |
| 103 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Shewanella massilia | |
| 104 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Shewanella sp. MR-7 | |
| 105 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Acetobacterium sp. HAAP-1 AF479584 | |
| 106 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Acetobacterium woodii X96954 | |
| 107 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Clostridium aceticum | |
| 108 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Clostridium acetobutylicum | |
| 109 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Clostridium acidiurici | |
| 110 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Clostridium formicaceticum | |
| 111 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Clostridium glycolicum strain RD-1 AJ291746 | |
| 112 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Clostridium magnum X77835 | |
| 113 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Clostridium pascui X96736 | |
| 114 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Clostridium scatologenes strain ATCC 25775 M59104 | |
| 115 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Moorella thermoacetica AJ633105 | |
| 116 | Signal/noise ratio | SNR | Long, Philip E | Calculated | Sporomusa ovata DSM2662 |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
8480 data points
Download Data
View dataset as HTML (shows only first 2000 rows)