Inagaki, Fumio; Hinrichs, Kai-Uwe; Kubo, Yusuke; Expedition 337 Scientists (2013): Perfluorocarbon measurements from IODP Hole 337-C0020A [dataset]. SIO7 Data Center, J-CORES Database; Ocean Drilling Program, Center for Deep Earth Exploration (JAMSTEC), PANGAEA, https://doi.org/10.1594/PANGAEA.823590
Always quote citation above when using data! You can download the citation in several formats below.
Related to:
Inagaki, Fumio; Hinrichs, Kai-Uwe; Kubo, Yusuke; Expedition 337 Scientists (2010): Integrated Ocean Drilling Program Expedition 337 scientific prospectus; deep coalbed biosphere off Shimokita; microbial processes and hydrocarbon system associated with deeply buried coalbed in the ocean. IODP Preliminary Report, Integrated Ocean Drilling Program, https://doi.org/10.2204/iodp.sp.337.2010
Project(s):
Coverage:
Latitude: 41.176640 * Longitude: 142.200550
Date/Time Start: 2012-08-11T00:00:00 * Date/Time End: 2012-09-09T00:00:00
Minimum DEPTH, sediment/rock: 0.000 m * Maximum DEPTH, sediment/rock: 2463.030 m
Event(s):
337-C0020A * Latitude: 41.176640 * Longitude: 142.200550 * Date/Time Start: 2012-08-11T00:00:00 * Date/Time End: 2012-09-09T00:00:00 * Elevation: -1180.0 m * Penetration: 1819 m * Recovery: 200.9 m * Location: Northwest Pacific * Campaign: Exp337 (Deep Coalbed Biosphere off Shimokita) * Basis: Chikyu * Method/Device: Drilling/drill rig (DRILL) * Comment: 32 cores; 263.5 m cored; 76.2 % recovered
Comment:
Geocode = [m CSF-A] Top Core depth (below sea floor)
Plus signs (+) indicate detection by MPN-PCR, with the number of plus signs indicating the highest dilution factor of DNA extract at which PCR detection could be obtained (+ = 1 fold, ++ = 10 fold, +++ = 100 fold, and ++++ = 1,000 fold dilution). Note: bd = below detection limit.
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Sample code/label | Sample label | Expedition 337 Scientists | DSDP/ODP/IODP sample designation | Sample top | |
| 2 | DEPTH, sediment/rock | Depth sed | m | Geocode | ||
| 3 | Depth, top/min | Depth top | m | Expedition 337 Scientists | [m CSF-A] Top Core depth (below sea floor) | |
| 4 | Depth, top/min | Depth top | m | Expedition 337 Scientists | [m CSF-B] Top Core depth (below sea floor) | |
| 5 | Sample code/label 2 | Sample label 2 | Expedition 337 Scientists | DSDP/ODP/IODP sample designation | Sample bottom | |
| 6 | Depth, bottom/max | Depth bot | m | Expedition 337 Scientists | [m CSF-A] Bottom Core depth (below sea floor) | |
| 7 | Depth, bottom/max | Depth bot | m | Expedition 337 Scientists | [m CSF-B] Bottom Core depth (below sea floor) | |
| 8 | Perfluorocarbon | PFC | µg/l | Expedition 337 Scientists | Gas chromatograph with an electron capture detector (GC-ECD) | Headspace, interior |
| 9 | Perfluorocarbon | PFC | µg/l | Expedition 337 Scientists | Gas chromatograph with an electron capture detector (GC-ECD) | Headspace, halfway |
| 10 | Perfluorocarbon | PFC | µg/l | Expedition 337 Scientists | Gas chromatograph with an electron capture detector (GC-ECD) | Headspace, exterior |
| 11 | Perfluorocarbon | PFC | µg/l | Expedition 337 Scientists | Gas chromatograph with an electron capture detector (GC-ECD) | Headspace, outskirt |
| 12 | Perfluorocarbon | PFC | µg/l | Expedition 337 Scientists | Gas chromatograph with an electron capture detector (GC-ECD) | Headspace, cuttings |
| 13 | Perfluorocarbon | PFC | µg/l | Expedition 337 Scientists | Gas chromatograph with an electron capture detector (GC-ECD) | Headspace, mud water |
| 14 | Perfluorocarbon | PFC | µg/l | Expedition 337 Scientists | Gas chromatograph with an electron capture detector (GC-ECD) | Mud gas |
| 15 | Perfluorocarbon | PFC | µg/l | Expedition 337 Scientists | Gas chromatograph with an electron capture detector (GC-ECD) | Headspace, formation water |
| 16 | Time Stamp | Time Stamp | Expedition 337 Scientists | Registration contamination test | ||
| 17 | Prokaryotes, abundance as single cells | Prok cell abund | #/cm3 | Expedition 337 Scientists | Epifluorescence microscopy | |
| 18 | Prokaryotes, abundance as single cells | Prok cell abund | #/cm3 | Expedition 337 Scientists | Flow cytometry | |
| 19 | Time Stamp | Time Stamp | Expedition 337 Scientists | Registration of microbial cell count | ||
| 20 | Specific 16S rRNA gene, presence | S 16S rRNA gene pres | Expedition 337 Scientists | Polymerase chain reaction (PCR) | Of SAR11 cluster | |
| 21 | Specific 16S rRNA gene, presence | S 16S rRNA gene pres | Expedition 337 Scientists | Polymerase chain reaction (PCR) | Of MG1 cluster | |
| 22 | Specific 16S rRNA gene, presence | S 16S rRNA gene pres | Expedition 337 Scientists | Polymerase chain reaction (PCR) | Of Xanthomonas | |
| 23 | Specific 16S rRNA gene, presence | S 16S rRNA gene pres | Expedition 337 Scientists | Polymerase chain reaction (PCR) | Of Halomonas | |
| 24 | Specific 16S rRNA gene, presence | S 16S rRNA gene pres | Expedition 337 Scientists | Polymerase chain reaction (PCR) | Of Bifidobacterium | |
| 25 | Specific 16S rRNA gene, presence | S 16S rRNA gene pres | Expedition 337 Scientists | Polymerase chain reaction (PCR) | Of Blautia | |
| 26 | Specific 16S rRNA gene, presence | S 16S rRNA gene pres | Expedition 337 Scientists | Polymerase chain reaction (PCR) | Of Methanobrevibacter | |
| 27 | 16S rRNA gene, abundance | 16S rRNA gene abund | #/cm3 | Expedition 337 Scientists | Polymerase chain reaction (PCR), using 806F/908R primer | Of Bacteria |
| 28 | 16S rRNA gene, abundance | 16S rRNA gene abund | #/cm3 | Expedition 337 Scientists | Polymerase chain reaction (PCR), using 908F/1075R primer | Of Bacteria |
| 29 | 16S rRNA gene, abundance | 16S rRNA gene abund | #/cm3 | Expedition 337 Scientists | Polymerase chain reaction (PCR), using 27F/338R primer | Of Bacteria |
| 30 | 16S rRNA gene, abundance | 16S rRNA gene abund | #/cm3 | Expedition 337 Scientists | Polymerase chain reaction (PCR), using 806F/915R primer | Of Archaea |
| 31 | 16S rRNA gene, abundance | 16S rRNA gene abund | #/cm3 | Expedition 337 Scientists | Polymerase chain reaction (PCR), using 915F/1059R primer | Of Archaea |
| 32 | 16S rRNA gene, abundance | 16S rRNA gene abund | #/cm3 | Expedition 337 Scientists | Polymerase chain reaction (PCR,) using 806F/958R primer | Of Archaea |
| 33 | Functional gene modified cytosine restriction, presence | F gene McrA pres | Expedition 337 Scientists | Polymerase chain reaction (PCR), using mcrIRD primer | Of methanogenic and anaerobic methane-oxidizing archaea | |
| 34 | Functional gene modified cytosine restriction, presence | F gene McrA pres | Expedition 337 Scientists | Polymerase chain reaction (PCR), using ANME-1-mcrI primer | Of methanogenic and anaerobic methane-oxidizing archaea | |
| 35 | Functional gene dissimilatory sulfite reductase genes, presence | F gene dsrB pres | Expedition 337 Scientists | Polymerase chain reaction (PCR), using dsrB F1-4RSI1 primer | Of sulfate-reducing prokaryotes | |
| 36 | Functional gene dissimilatory sulfite reductase genes, presence | F gene dsrB pres | Expedition 337 Scientists | Polymerase chain reaction (PCR), using dsrB F1-4RSI2 primer | Of sulfate-reducing prokaryotes | |
| 37 | Functional gene formyl tetrahydrofolate synthetase genes, presence | F gene fhs pres | Expedition 337 Scientists | Polymerase chain reaction (PCR), using fhs 49F-574R primer | Of Acetogens and other C1-compound metabolizing prokaryotes | |
| 38 | Uniform resource locator/link to graphic | URL graphic | Expedition 337 Scientists | |||
| 39 | Comment | Comment | Expedition 337 Scientists | On measurement | ||
| 40 | Time Stamp | Time Stamp | Expedition 337 Scientists | Registration of PCR and DNA sequencer |
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
2885 data points
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