Citation:

PANGAEA.818214

Name: Abundance of Gamma-A nifH genes in tropical waters of the eastern North Atlantic
Published: 2013-08-20
License: https://creativecommons.org/licenses/by/3.0/
Keywords: MAREDAT_Diazotrophs_Collection

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Keyword(s):

MAREDAT_Diazotrophs_Collection

Related to:

Luo, Yawei; Doney, Scott C; Anderson, L A; Benavides, Mar; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, Kjärstin H; Böttjer, D; Capone, D G; Carpenter, E J; Chen, Yaw-Lin; Church, Matthew J; Dore, John E; Falcón, Luisa I; Fernández, A; Foster, R A; Furuya, Ken; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47-73, https://doi.org/10.5194/essd-4-47-2012

Turk, Kendra A; Rees, Andrew; Zehr, Jonathan P; Pereira, Nicole; Swift, Paul; Shelley, Rachel; Lohan, Maeve C; Woodward, E Malcolm S; Gilbert, Jack Anthony (2011): Nitrogen fixation and nitrogenase (nifH) expression in tropical waters of the eastern North Atlantic. The ISME Journal, 5(7), 1201-1212, https://doi.org/10.1038/ismej.2010.205

Coverage:

Median Latitude: 19.832593 * Median Longitude: -23.924074 * South-bound Latitude: 16.010000 * West-bound Longitude: -25.050000 * North-bound Latitude: 26.110000 * East-bound Longitude: -22.740000

Date/Time Start: 2007-11-17T04:09:00 * Date/Time End: 2007-12-13T00:00:00

Minimum DEPTH, water: 5 m * Maximum DEPTH, water: 50 m

Event(s):

D325_Stn-A-02 * Latitude: 17.720000 * Longitude: -22.740000 * Date/Time: 2007-11-17T04:09:00 * Location: Cape Verde * Method/Device: Water pump (PUMP)

D325_Stn-B-01 * Latitude: 16.890000 * Longitude: -24.830000 * Date/Time: 2007-11-22T00:00:00 * Location: Cape Verde * Method/Device: Water pump (PUMP)

D325_Stn-C-01 * Latitude: 16.010000 * Longitude: -23.670000 * Date/Time: 2007-11-28T00:00:00 * Location: Cape Verde * Method/Device: Water pump (PUMP)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event
2	Latitude of event	Latitude
3	Longitude of event	Longitude
4	Date/Time of event	Date/Time
5	DEPTH, water	Depth water	m			Geocode
6	Trichodesmium, abundance expressed in number of nifH gene copies	Trichodesmium abund nifH copies	10⁶ #/m³	Turk, Kendra A	Fluorescence-based quantitative real-time PCR (qPCR)
7	Trichodesmium abundance, total	Trichodesmium abund total	10⁶ #/m³	Turk, Kendra A	Fluorescence-based quantitative real-time PCR (qPCR)
8	Trichodesmium, biomass as carbon	Trichodesmium C	mg/m³	Luo, Yawei	Calculated after Luo et al. (2012)
9	Unicellular cyanobacteria-A, abundance expressed in number of nifH gene copies	UCYN-A abund nifH copies	10⁶ #/m³	Turk, Kendra A	Fluorescence-based quantitative real-time PCR (qPCR)
10	Unicellular cyanobacteria-A, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	UCYN-A C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated after Luo et al. (2012)
11	Unicellular cyanobacteria-B, abundance expressed in number of nifH gene copies	UCYN-B abund nifH copies	10⁶ #/m³	Turk, Kendra A	Fluorescence-based quantitative real-time PCR (qPCR)
12	Unicellular cyanobacteria-B, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	UCYN-B C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated after Luo et al. (2012)
13	Unicellular cyanobacteria, biomass	UCYN biom	mg/m²	Luo, Yawei	Calculated after Luo et al. (2012)
14	Richelia, associated species	Richelia association		Turk, Kendra A	Fluorescence-based quantitative real-time PCR (qPCR)
15	Richelia, abundance expressed in number of nifH gene copies	Richelia abund nifH copies	10⁶ #/m³	Turk, Kendra A	Fluorescence-based quantitative real-time PCR (qPCR)
16	Richelia, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies	Richelia C per nifH copies	mg/10⁶ #	Luo, Yawei	Calculated after Luo et al. (2012)
17	Heterocyst, biomass	Heterocyst biom	mg/m³	Luo, Yawei	Calculated after Luo et al. (2012)
18	Diazotrophs, total biomass as carbon	Diazotrophs total C	mg/m³	Luo, Yawei	Calculated after Luo et al. (2012)
19	Temperature, water	Temp	°C	Turk, Kendra A
20	Salinity	Sal		Turk, Kendra A
21	Nitrate	[NO3]-	µmol/l	Turk, Kendra A
22	Phosphate	[PO4]3-	µmol/l	Turk, Kendra A
23	Iron	Fe	nmol/l	Turk, Kendra A
24	Chlorophyll a	Chl a	mg/m³	Turk, Kendra A
25	Comment	Comment		Luo, Yawei

License:

Creative Commons Attribution 3.0 Unported (CC-BY-3.0)

Size:

510 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Event	2 Latitude	3 Longitude	4 Date/Time	5 Depth water [m]	6 Trichodesmium abund nifH copies [10⁶ #/m³]	7 Trichodesmium abund total [10⁶ #/m³]	8 Trichodesmium C [mg/m³]	9 UCYN-A abund nifH copies [10⁶ #/m³]	10 UCYN-A C per nifH copies [mg/10⁶ #]	11 UCYN-B abund nifH copies [10⁶ #/m³]	12 UCYN-B C per nifH copies [mg/10⁶ #]	13 UCYN biom [mg/m²]	14 Richelia association	15 Richelia abund nifH copies [10⁶ #/m³]	16 Richelia C per nifH copies [mg/10⁶ #]	17 Heterocyst biom [mg/m³]	18 Diazotrophs total C [mg/m³]	19 Temp [°C]	20 Sal	21 [NO3]- [µmol/l]	22 [PO4]3- [µmol/l]	23 Fe [nmol/l]	24 Chl a [mg/m³]	25 Comment
D325_Stn-A-02	17.72	-22.74	2007-11-17	5	0.00	0.3	0.000	130.00	0.0002	0.01	0.02	0.0262	Rhizosolenia	0.88	0.01	0.0088	0.035	24.9	36.8	0.01	0.05	1.51	0.10	UCYN-B detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-B-01	16.89	-24.83	2007-11-22	5	4.90	0.3	1.470	10.00	0.0002	0.00	0.02	0.0020		0.00	0.01	0.0000	1.472	25.3	36.7	0.05	0.09	0.58	0.33
D325_Stn-B-01	16.89	-24.83	2007-11-22	5	0.00	0.3	0.000	1.40	0.0002	0.00	0.02	0.0003	Hemiaulus, Rhizosolenia	0.01	0.01	0.0001	0.000	25.2	36.8	0.06	0.10		0.38	Richelia detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-B-01	16.89	-24.83	2007-11-22	50	0.52	0.3	0.156	1.90	0.0002	0.01	0.02	0.0006	Hemiaulus	2.20	0.01	0.0220	0.179	25.2	36.8	4.12	0.33			UCYN-B detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-C-01	16.01	-23.67	2007-11-28	5	0.63	0.3	0.189	0.00	0.0002	0.00	0.02	0.0000	Hemiaulus, Rhizosolenia	0.86	0.01	0.0086	0.198	24.9	36.8	0.12	0.06	0.32	0.19
D325_Stn-C-03	16.02	-23.73	2007-11-28	5	0.90	0.3	0.270	0.00	0.0002	0.00	0.02	0.0000	Hemiaulus, Rhizosolenia	1.10	0.01	0.0110	0.281	24.7	36.5	0.06	0.06		0.22
D325_Stn-C-04	16.02	-23.74	2007-11-28	5	2.50	0.3	0.750	0.00	0.0002	0.00	0.02	0.0000	Hemiaulus, Rhizosolenia	1.00	0.01	0.0100	0.760	24.7	36.5	0.06	0.06	0.32
D325_Stn-C-05	16.03	-23.76	2007-11-28	5	0.00	0.3	0.000	0.00	0.0002	0.00	0.02	0.0000		0.00	0.01	0.0000	0.000	24.7	36.4	0.05	0.04
D325_Stn-C-06	16.04	-23.78	2007-11-28	5	0.01	0.3	0.003	0.00	0.0002	0.00	0.02	0.0000		0.00	0.01	0.0000	0.003	24.7	36.5	0.05	0.04
D325_Stn-C-07	16.03	-23.78	2007-11-28	5	0.00	0.3	0.000	0.00	0.0002	0.00	0.02	0.0000					0.000	24.7	36.5	0.05	0.04
D325_Stn-C-08	16.02	-23.77	2007-11-28	5	0.00	0.3	0.000	0.00	0.0002	0.00	0.02	0.0000	Rhizosolenia	0.01	0.01	0.0001	0.000	24.6	36.5	0.05	0.04			Richelia detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-D-01	17.72	-22.95	2007-12-02	5	0.00	0.3	0.000	41.00	0.0002	0.00	0.02	0.0082	Rhizosolenia	0.01	0.01	0.0001	0.008	23.9	36.8	0.01	0.08	0.30	0.12	Richelia detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-D-02	17.78	-22.96	2007-12-02	5	0.01	0.3	0.003	73.00	0.0002	1.50	0.02	0.0446	Rhizosolenia	0.01	0.01	0.0001	0.048	23.9	36.8	0.01	0.12			Richelia detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-D-03	17.79	-22.97	2007-12-02	5	0.00	0.3	0.000	16.00	0.0002	0.00	0.02	0.0032					0.003	24.0	36.8	0.01	0.12
D325_Stn-D-04	17.80	-23.00	2007-12-02	5	0.00	0.3	0.000	0.01	0.0002	0.00	0.02	0.0000	Rhizosolenia	0.01	0.01	0.0001	0.000	24.0	36.8	0.01	0.12			UCYN-A Richelia detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-D-05	17.81	-23.05	2007-12-02	5	0.00	0.3	0.000	4.50	0.0002	0.00	0.02	0.0009	Rhizosolenia	0.01	0.01	0.0001	0.001	24.0	36.9	0.01	0.12			Richelia detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-D-06	17.81	-23.09	2007-12-02	5	0.00	0.3	0.000	0.01	0.0002	0.00	0.02	0.0000	Rhizosolenia	1.00	0.01	0.0100	0.010	23.9	36.9	0.01	0.14			UCYN-A detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-E-02	20.65	-24.96	2007-12-07	5	0.01	0.3	0.003	76.00	0.0002	0.00	0.02	0.0152		0.00	0.01	0.0000	0.018	23.9	36.9	0.01	0.06	0.35	0.08
D325_Stn-E-03	20.85	-25.01	2007-12-07	5	0.95	0.3	0.285	45.00	0.0002	0.00	0.02	0.0090	Rhizosolenia	0.01	0.01	0.0001	0.294	23.9	37.0	0.01	0.05			Richelia detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-E-04	20.94	-25.04	2007-12-07	5	0.01	0.3	0.003	24.00	0.0002	0.00	0.02	0.0048		0.00	0.01	0.0000	0.008	23.9	36.9	0.01	0.05
D325_Stn-E-05	20.98	-25.05	2007-12-07	5	0.00	0.3	0.000	3.40	0.0002	0.01	0.02	0.0009		0.00	0.01	0.0000	0.001	23.9	36.9	0.01	0.05			UCYN-B detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-E-07	21.04	-25.05	2007-12-07	5	0.00	0.3	0.000	44.00	0.0002	0.00	0.02	0.0088	Rhizosolenia	0.01	0.01	0.0001	0.009	23.8	36.9	0.01	0.05			Richelia detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-E-08	21.08	-25.05	2007-12-08	5	0.00	0.3	0.000	120.00	0.0002	0.00	0.02	0.0240		0.00	0.01	0.0000	0.024	23.8	36.9	0.01	0.05
D325_Stn-F-01	26.05	-23.99	2007-12-12	5	0.01	0.3	0.003	0.01	0.0002	0.00	0.02	0.0000	Rhizosolenia	0.01	0.01	0.0001	0.003	23.3	37.4	0.01	0.01	0.54	0.06	UCYN-A, Richelia detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-F-02	26.05	-23.98	2007-12-12	5	1.20	0.3	0.360	0.01	0.0002	0.00	0.02	0.0000	Hemiaulus, Rhizosolenia	1.60	0.01	0.0160	0.376	22.7	37.3	0.01	0.01			UCYN- A detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-F-03	26.07	-23.99	2007-12-12	5	0.01	0.3	0.003	0.00	0.0002	0.01	0.02	0.0002	Hemiaulus, Rhizosolenia	0.01	0.01	0.0001	0.003	22.9	37.3	0.01	0.01			UCYN-B, Richelia detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-F-04	26.09	-24.01	2007-12-12	5	0.01	0.3	0.003	0.01	0.0002	1.40	0.02	0.0280	Hemiaulus, Rhizosolenia	0.01	0.01	0.0001	0.031	22.7	37.3	0.01	0.01			UCYN-A, Richelia detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-F-05	26.08	-24.00	2007-12-12	5	0.00	0.3	0.000	0.01	0.0002	0.00	0.02	0.0000	Hemiaulus, Rhizosolenia	0.95	0.01	0.0095	0.010	22.6	37.3	0.01	0.01			UCYN-A detected but not quantifiable, assigned 10 copies L**-1
D325_Stn-F-06	26.11	-24.00	2007-12-13	5	0.01	0.3	0.003	0.68	0.0002	0.00	0.02	0.0001	Hemiaulus, Rhizosolenia	3.20	0.01	0.0320	0.035	22.6	37.3	0.01	0.01